data_1MA # _chem_comp.id 1MA _chem_comp.name "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id A _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2018-04-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces MAD _chem_comp.formula_weight 361.248 _chem_comp.one_letter_code A _chem_comp.three_letter_code 1MA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1EVV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1MA P P P 0 1 N N N 46.529 22.817 33.964 -5.074 -0.976 0.070 P 1MA 1 1MA OP1 O1P O 0 1 N N N 46.409 23.293 35.345 -6.104 0.010 -0.327 OP1 1MA 2 1MA OP2 O2P O 0 1 N N N 45.367 22.870 33.064 -5.612 -1.843 1.315 OP2 1MA 3 1MA OP3 O3P O 0 1 N Y N 47.720 23.514 33.183 -4.761 -1.954 -1.170 OP3 1MA 4 1MA "O5'" "O5'" O 0 1 N N N 46.992 21.295 34.148 -3.728 -0.203 0.497 "O5'" 1MA 5 1MA "C5'" "C5'" C 0 1 N N N 47.255 20.477 33.035 -3.063 0.732 -0.356 "C5'" 1MA 6 1MA "C4'" "C4'" C 0 1 N N R 46.967 19.012 33.364 -1.824 1.279 0.354 "C4'" 1MA 7 1MA "O4'" "O4'" O 0 1 N N N 47.644 18.625 34.598 -0.860 0.228 0.534 "O4'" 1MA 8 1MA "C3'" "C3'" C 0 1 N N S 45.501 18.599 33.578 -1.160 2.366 -0.513 "C3'" 1MA 9 1MA "O3'" "O3'" O 0 1 N N N 45.397 17.196 33.301 -1.127 3.612 0.186 "O3'" 1MA 10 1MA "C2'" "C2'" C 0 1 N N R 45.394 18.795 35.079 0.276 1.839 -0.749 "C2'" 1MA 11 1MA "O2'" "O2'" O 0 1 N N N 44.335 18.133 35.717 1.231 2.898 -0.651 "O2'" 1MA 12 1MA "C1'" "C1'" C 0 1 N N R 46.700 18.145 35.524 0.447 0.830 0.415 "C1'" 1MA 13 1MA N9 N9 N 0 1 Y N N 47.110 18.482 36.893 1.452 -0.181 0.078 N9 1MA 14 1MA C8 C8 C 0 1 Y N N 46.675 19.534 37.642 1.219 -1.380 -0.536 C8 1MA 15 1MA N7 N7 N 0 1 Y N N 47.139 19.537 38.863 2.345 -2.030 -0.678 N7 1MA 16 1MA C5 C5 C 0 1 Y N N 47.966 18.423 38.919 3.339 -1.297 -0.172 C5 1MA 17 1MA C6 C6 C 0 1 N N N 48.755 17.971 40.070 4.792 -1.508 -0.045 C6 1MA 18 1MA N6 N6 N 0 1 N N N 48.694 18.686 41.361 5.367 -2.684 -0.141 N6 1MA 19 1MA N1 N1 N 0 1 N N N 49.517 16.774 39.781 5.491 -0.321 0.189 N1 1MA 20 1MA CM1 CM1 C 0 1 N N N 50.300 16.311 40.944 6.874 -0.169 -0.271 CM1 1MA 21 1MA C2 C2 C 0 1 N N N 49.413 16.251 38.532 4.866 0.693 0.852 C2 1MA 22 1MA N3 N3 N 0 1 N N N 48.678 16.652 37.448 3.565 0.833 0.892 N3 1MA 23 1MA C4 C4 C 0 1 Y N N 47.963 17.774 37.712 2.785 -0.097 0.312 C4 1MA 24 1MA HOP2 HOP2 H 0 0 N N N 44.623 23.236 33.528 -6.423 -2.336 1.130 HOP2 1MA 25 1MA HOP3 HOP3 H 0 0 N N N 48.158 24.131 33.757 -4.093 -2.627 -0.981 HOP3 1MA 26 1MA "H5'" "H5'1" H 0 1 N N N 46.617 20.791 32.196 -2.764 0.233 -1.278 "H5'" 1MA 27 1MA "H5''" "H5'2" H 0 0 N N N 48.312 20.583 32.751 -3.740 1.554 -0.591 "H5''" 1MA 28 1MA "H4'" "H4'" H 0 1 N N N 47.366 18.401 32.541 -2.104 1.694 1.322 "H4'" 1MA 29 1MA "H3'" "H3'" H 0 1 N N N 44.797 19.227 33.012 -1.689 2.475 -1.460 "H3'" 1MA 30 1MA "HO3'" "HO3'" H 0 0 N Y N 44.499 16.914 33.426 -0.719 4.333 -0.313 "HO3'" 1MA 31 1MA "H2'" "H2'" H 0 1 N N N 45.408 19.868 35.321 0.353 1.337 -1.714 "H2'" 1MA 32 1MA "HO2'" "HO2'" H 0 0 N N N 44.359 18.321 36.648 1.108 3.600 -1.304 "HO2'" 1MA 33 1MA "H1'" "H1'" H 0 1 N N N 46.598 17.054 35.432 0.716 1.348 1.335 "H1'" 1MA 34 1MA H8 H8 H 0 1 N N N 46.009 20.294 37.262 0.251 -1.737 -0.855 H8 1MA 35 1MA HN61 HN61 H 0 0 N N N 49.258 18.246 42.060 6.329 -2.762 -0.048 HN61 1MA 36 1MA HM11 HM11 H 0 0 N N N 50.858 15.403 40.673 6.878 0.245 -1.279 HM11 1MA 37 1MA HM12 HM12 H 0 0 N N N 51.006 17.098 41.247 7.408 0.504 0.400 HM12 1MA 38 1MA HM13 HM13 H 0 0 N N N 49.619 16.087 41.779 7.365 -1.142 -0.276 HM13 1MA 39 1MA H2 H2 H 0 1 N N N 50.012 15.368 38.365 5.475 1.418 1.371 H2 1MA 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1MA P OP1 DOUB N N 1 1MA P OP2 SING N N 2 1MA P OP3 SING N N 3 1MA P "O5'" SING N N 4 1MA OP2 HOP2 SING N N 5 1MA OP3 HOP3 SING N N 6 1MA "O5'" "C5'" SING N N 7 1MA "C5'" "C4'" SING N N 8 1MA "C5'" "H5'" SING N N 9 1MA "C5'" "H5''" SING N N 10 1MA "C4'" "O4'" SING N N 11 1MA "C4'" "C3'" SING N N 12 1MA "C4'" "H4'" SING N N 13 1MA "O4'" "C1'" SING N N 14 1MA "C3'" "O3'" SING N N 15 1MA "C3'" "C2'" SING N N 16 1MA "C3'" "H3'" SING N N 17 1MA "O3'" "HO3'" SING N N 18 1MA "C2'" "O2'" SING N N 19 1MA "C2'" "C1'" SING N N 20 1MA "C2'" "H2'" SING N N 21 1MA "O2'" "HO2'" SING N N 22 1MA "C1'" N9 SING N N 23 1MA "C1'" "H1'" SING N N 24 1MA N9 C8 SING Y N 25 1MA N9 C4 SING Y N 26 1MA C8 N7 DOUB Y N 27 1MA C8 H8 SING N N 28 1MA N7 C5 SING Y N 29 1MA C5 C6 SING N N 30 1MA C5 C4 DOUB Y N 31 1MA C6 N6 DOUB N N 32 1MA C6 N1 SING N N 33 1MA N6 HN61 SING N N 34 1MA N1 CM1 SING N N 35 1MA N1 C2 SING N N 36 1MA CM1 HM11 SING N N 37 1MA CM1 HM12 SING N N 38 1MA CM1 HM13 SING N N 39 1MA C2 N3 DOUB N N 40 1MA C2 H2 SING N N 41 1MA N3 C4 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1MA SMILES ACDLabs 12.01 "P(=O)(O)(O)OCC1OC(C(C1O)O)n2cnc3\C(=N)N(C)C=Nc23" 1MA InChI InChI 1.03 "InChI=1S/C11H16N5O7P/c1-15-3-14-10-6(9(15)12)13-4-16(10)11-8(18)7(17)5(23-11)2-22-24(19,20)21/h3-5,7-8,11-12,17-18H,2H2,1H3,(H2,19,20,21)/b12-9-/t5-,7-,8-,11-/m1/s1" 1MA InChIKey InChI 1.03 BKBYKEWNXKDACS-JOLDIKRXSA-N 1MA SMILES_CANONICAL CACTVS 3.385 "CN1C=Nc2n(cnc2C1=N)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3O" 1MA SMILES CACTVS 3.385 "CN1C=Nc2n(cnc2C1=N)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3O" 1MA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C\1/c2c(n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)N=CN1C" 1MA SMILES "OpenEye OEToolkits" 1.7.6 "CN1C=Nc2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)C1=N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1MA "SYSTEMATIC NAME" ACDLabs 12.01 ;1-methyladenosine 5'-(dihydrogen phosphate) ; 1MA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,4R,5R)-5-(6-azanylidene-1-methyl-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1MA "Create component" 1999-07-08 RCSB 1MA "Modify descriptor" 2010-09-29 RCSB 1MA "Other modification" 2012-06-14 RCSB 1MA "Other modification" 2015-08-19 RCSB 1MA "Other modification" 2018-04-17 RCSB #