data_1PM # _chem_comp.id 1PM _chem_comp.name "methyl (3S)-3-{2-[(1,3-benzodioxol-5-ylmethyl)amino]-2-oxoethyl}-4-[2-(1H-imidazol-1-yl)pyrimidin-4-yl]piperazine-1-carboxylate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H25 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-11-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 479.489 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1PM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1DD7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1PM N3 N3 N 0 1 Y N N 68.028 -8.975 52.359 -2.886 -3.833 0.664 N3 1PM 1 1PM C4 C4 C 0 1 Y N N 66.683 -8.846 52.485 -2.901 -5.203 0.756 C4 1PM 2 1PM C5 C5 C 0 1 Y N N 66.367 -9.161 53.766 -3.191 -5.503 2.036 C5 1PM 3 1PM NFE NFE N 0 1 Y N N 67.518 -9.467 54.440 -3.348 -4.355 2.711 NFE 1PM 4 1PM C2 C2 C 0 1 Y N N 68.497 -9.340 53.547 -3.169 -3.348 1.902 C2 1PM 5 1PM C11 C11 C 0 1 Y N N 68.781 -8.761 51.250 -2.624 -3.082 -0.482 C11 1PM 6 1PM N12 N12 N 0 1 Y N N 70.121 -8.950 51.264 -2.756 -1.767 -0.434 N12 1PM 7 1PM C13 C13 C 0 1 Y N N 70.939 -8.791 50.186 -2.514 -1.023 -1.509 C13 1PM 8 1PM C14 C14 C 0 1 Y N N 70.322 -8.401 48.966 -2.118 -1.650 -2.692 C14 1PM 9 1PM C15 C15 C 0 1 Y N N 68.949 -8.200 48.935 -1.992 -3.026 -2.697 C15 1PM 10 1PM N16 N16 N 0 1 Y N N 68.222 -8.384 50.062 -2.245 -3.703 -1.587 N16 1PM 11 1PM N21 N21 N 0 1 N N N 72.254 -9.034 50.350 -2.653 0.355 -1.456 N21 1PM 12 1PM C22 C22 C 0 1 N N N 72.786 -9.267 51.682 -4.029 0.732 -1.106 C22 1PM 13 1PM C23 C23 C 0 1 N N N 73.359 -10.680 51.716 -4.188 2.250 -1.235 C23 1PM 14 1PM N24 N24 N 0 1 N N N 74.429 -10.740 50.741 -3.141 2.899 -0.430 N24 1PM 15 1PM C25 C25 C 0 1 N N N 74.062 -10.429 49.351 -1.747 2.474 -0.627 C25 1PM 16 1PM C26 C26 C 0 1 N N S 73.205 -9.109 49.224 -1.685 0.946 -0.522 C26 1PM 17 1PM C27 C27 C 0 1 N N N 75.715 -11.061 51.100 -3.452 3.858 0.465 C27 1PM 18 1PM O28 O28 O 0 1 N N N 76.016 -11.314 52.302 -2.575 4.383 1.122 O28 1PM 19 1PM O29 O29 O 0 1 N N N 76.703 -11.118 50.171 -4.734 4.234 0.631 O29 1PM 20 1PM C30 C30 C 0 1 N N N 78.086 -11.441 50.361 -4.995 5.273 1.612 C30 1PM 21 1PM C31 C31 C 0 1 N N N 74.097 -7.806 49.148 -0.276 0.467 -0.877 C31 1PM 22 1PM C32 C32 C 0 1 N N N 73.314 -6.524 48.978 0.697 0.952 0.167 C32 1PM 23 1PM O33 O33 O 0 1 N N N 72.955 -6.178 47.809 0.289 1.517 1.160 O33 1PM 24 1PM N34 N34 N 0 1 N N N 72.983 -5.738 50.051 2.020 0.757 -0.002 N34 1PM 25 1PM C36 C36 C 0 1 N N N 72.234 -4.508 50.002 2.957 1.128 1.062 C36 1PM 26 1PM C41 C41 C 0 1 Y N N 71.273 -4.499 51.114 4.370 0.917 0.582 C41 1PM 27 1PM C42 C42 C 0 1 Y N N 71.558 -3.759 52.279 5.043 1.945 -0.052 C42 1PM 28 1PM C43 C43 C 0 1 Y N N 70.664 -3.752 53.371 6.339 1.757 -0.495 C43 1PM 29 1PM C44 C44 C 0 1 Y N N 69.466 -4.478 53.259 6.967 0.537 -0.303 C44 1PM 30 1PM C45 C45 C 0 1 Y N N 69.189 -5.209 52.133 6.289 -0.498 0.336 C45 1PM 31 1PM C46 C46 C 0 1 Y N N 70.064 -5.224 51.041 4.992 -0.301 0.782 C46 1PM 32 1PM O47 O47 O 0 1 N N N 68.471 -4.635 54.144 8.215 0.099 -0.638 O47 1PM 33 1PM C48 C48 C 0 1 N N N 67.482 -5.478 53.577 8.439 -1.076 0.164 C48 1PM 34 1PM O49 O49 O 0 1 N N N 68.002 -5.804 52.290 7.113 -1.584 0.402 O49 1PM 35 1PM H4 H4 H 0 1 N N N 65.993 -8.548 51.710 -2.717 -5.904 -0.044 H4 1PM 36 1PM H5 H5 H 0 1 N N N 65.372 -9.169 54.185 -3.280 -6.498 2.448 H5 1PM 37 1PM H2 H2 H 0 1 N N N 69.541 -9.512 53.761 -3.234 -2.304 2.171 H2 1PM 38 1PM H14 H14 H 0 1 N N N 70.915 -8.263 48.074 -1.914 -1.073 -3.582 H14 1PM 39 1PM H15 H15 H 0 1 N N N 68.464 -7.899 48.018 -1.688 -3.543 -3.595 H15 1PM 40 1PM H22 H22 H 0 1 N N N 73.576 -8.535 51.905 -4.725 0.235 -1.782 H22 1PM 41 1PM H23 H23 H 0 1 N N N 73.748 -10.907 52.720 -4.080 2.543 -2.279 H23 1PM 42 1PM H25 H25 H 0 1 N N N 74.987 -10.299 48.769 -1.405 2.787 -1.613 H25 1PM 43 1PM H301 H301 H 0 0 N N N 78.582 -11.524 49.382 -6.064 5.480 1.646 H301 1PM 44 1PM H302 H302 H 0 0 N N N 78.570 -10.649 50.951 -4.658 4.938 2.593 H302 1PM 45 1PM H303 H303 H 0 0 N N N 78.168 -12.399 50.896 -4.458 6.179 1.333 H303 1PM 46 1PM H311 H311 H 0 0 N N N 74.667 -7.732 50.086 -0.260 -0.622 -0.910 H311 1PM 47 1PM H312 H312 H 0 0 N N N 74.734 -7.909 48.257 0.009 0.865 -1.851 H312 1PM 48 1PM H35 H35 H 0 1 N N N 73.290 -6.047 50.951 2.351 0.372 -0.828 H35 1PM 49 1PM H361 H361 H 0 0 N N N 72.918 -3.652 50.095 2.814 2.176 1.323 H361 1PM 50 1PM H362 H362 H 0 0 N N N 71.699 -4.432 49.044 2.774 0.507 1.939 H362 1PM 51 1PM H42 H42 H 0 1 N N N 72.474 -3.189 52.337 4.555 2.896 -0.203 H42 1PM 52 1PM H43 H43 H 0 1 N N N 70.895 -3.202 54.271 6.862 2.561 -0.990 H43 1PM 53 1PM H46 H46 H 0 1 N N N 69.817 -5.785 50.152 4.466 -1.100 1.282 H46 1PM 54 1PM H481 H481 H 0 0 N N N 67.328 -6.381 54.187 9.036 -1.805 -0.383 H481 1PM 55 1PM H482 H482 H 0 0 N N N 66.497 -4.992 53.522 8.922 -0.812 1.104 H482 1PM 56 1PM H221 H221 H 0 0 N N N 71.992 -9.157 52.436 -4.240 0.429 -0.080 H221 1PM 57 1PM H231 H231 H 0 0 N N N 72.579 -11.419 51.480 -5.170 2.548 -0.868 H231 1PM 58 1PM H24 H24 H 0 1 N N N 73.449 -11.261 48.975 -1.116 2.919 0.142 H24 1PM 59 1PM H251 H251 H 0 0 N N N 72.652 -9.156 48.274 -1.928 0.641 0.495 H251 1PM 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1PM N3 C4 SING Y N 1 1PM N3 C2 SING Y N 2 1PM N3 C11 SING Y N 3 1PM C4 C5 DOUB Y N 4 1PM C4 H4 SING N N 5 1PM C5 NFE SING Y N 6 1PM C5 H5 SING N N 7 1PM NFE C2 DOUB Y N 8 1PM C2 H2 SING N N 9 1PM C11 N12 DOUB Y N 10 1PM C11 N16 SING Y N 11 1PM N12 C13 SING Y N 12 1PM C13 C14 DOUB Y N 13 1PM C13 N21 SING N N 14 1PM C14 C15 SING Y N 15 1PM C14 H14 SING N N 16 1PM C15 N16 DOUB Y N 17 1PM C15 H15 SING N N 18 1PM N21 C22 SING N N 19 1PM N21 C26 SING N N 20 1PM C22 C23 SING N N 21 1PM C22 H22 SING N N 22 1PM C23 N24 SING N N 23 1PM C23 H23 SING N N 24 1PM N24 C25 SING N N 25 1PM N24 C27 SING N N 26 1PM C25 C26 SING N N 27 1PM C25 H25 SING N N 28 1PM C26 C31 SING N N 29 1PM C27 O28 DOUB N N 30 1PM C27 O29 SING N N 31 1PM O29 C30 SING N N 32 1PM C30 H301 SING N N 33 1PM C30 H302 SING N N 34 1PM C30 H303 SING N N 35 1PM C31 C32 SING N N 36 1PM C31 H311 SING N N 37 1PM C31 H312 SING N N 38 1PM C32 O33 DOUB N N 39 1PM C32 N34 SING N N 40 1PM N34 C36 SING N N 41 1PM N34 H35 SING N N 42 1PM C36 C41 SING N N 43 1PM C36 H361 SING N N 44 1PM C36 H362 SING N N 45 1PM C41 C42 DOUB Y N 46 1PM C41 C46 SING Y N 47 1PM C42 C43 SING Y N 48 1PM C42 H42 SING N N 49 1PM C43 C44 DOUB Y N 50 1PM C43 H43 SING N N 51 1PM C44 C45 SING Y N 52 1PM C44 O47 SING N N 53 1PM C45 C46 DOUB Y N 54 1PM C45 O49 SING N N 55 1PM C46 H46 SING N N 56 1PM O47 C48 SING N N 57 1PM C48 O49 SING N N 58 1PM C48 H481 SING N N 59 1PM C48 H482 SING N N 60 1PM C22 H221 SING N N 61 1PM C23 H231 SING N N 62 1PM C25 H24 SING N N 63 1PM C26 H251 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1PM SMILES_CANONICAL CACTVS 3.352 "COC(=O)N1CCN([C@H](C1)CC(=O)NCc2ccc3OCOc3c2)c4ccnc(n4)n5ccnc5" 1PM SMILES CACTVS 3.352 "COC(=O)N1CCN([CH](C1)CC(=O)NCc2ccc3OCOc3c2)c4ccnc(n4)n5ccnc5" 1PM SMILES_CANONICAL "OpenEye OEToolkits" 1.6.1 "COC(=O)N1CCN([C@H](C1)CC(=O)NCc2ccc3c(c2)OCO3)c4ccnc(n4)n5ccnc5" 1PM SMILES "OpenEye OEToolkits" 1.6.1 "COC(=O)N1CCN(C(C1)CC(=O)NCc2ccc3c(c2)OCO3)c4ccnc(n4)n5ccnc5" 1PM InChI InChI 1.03 "InChI=1S/C23H25N7O5/c1-33-23(32)28-8-9-30(20-4-5-25-22(27-20)29-7-6-24-14-29)17(13-28)11-21(31)26-12-16-2-3-18-19(10-16)35-15-34-18/h2-7,10,14,17H,8-9,11-13,15H2,1H3,(H,26,31)/t17-/m0/s1" 1PM InChIKey InChI 1.03 NVYMEDQKBQMAKF-KRWDZBQOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1PM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "methyl (3S)-3-[2-(1,3-benzodioxol-5-ylmethylamino)-2-oxo-ethyl]-4-(2-imidazol-1-ylpyrimidin-4-yl)piperazine-1-carboxylate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1PM "Create component" 1999-11-15 RCSB 1PM "Modify aromatic_flag" 2011-06-04 RCSB 1PM "Modify descriptor" 2011-06-04 RCSB #