data_1U0 # _chem_comp.id 1U0 _chem_comp.name "2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1R)-1,2-dihydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H23 N3 O9 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-05 _chem_comp.pdbx_modified_date 2013-08-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 483.370 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1U0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4KXY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1U0 O3B O3B O 0 1 N N N 35.644 0.240 20.671 -8.021 0.834 -0.658 O3B 1U0 1 1U0 PB PB P 0 1 N N N 35.183 1.123 19.530 -7.008 -0.132 0.137 PB 1U0 2 1U0 O1B O1B O 0 1 N N N 35.067 0.359 18.279 -7.037 0.202 1.579 O1B 1U0 3 1U0 O2B O2B O 0 1 N N N 35.996 2.405 19.510 -7.456 -1.665 -0.067 O2B 1U0 4 1U0 O3A O3A O 0 1 N N N 33.579 1.506 19.804 -5.515 0.072 -0.431 O3A 1U0 5 1U0 PA PA P 0 1 N N N 32.581 1.432 21.028 -4.051 -0.333 0.102 PA 1U0 6 1U0 O1A O1A O 0 1 N N N 31.223 1.705 20.556 -3.982 -0.121 1.565 O1A 1U0 7 1U0 O2A O2A O 0 1 N N N 32.842 0.136 21.770 -3.768 -1.883 -0.229 O2A 1U0 8 1U0 O7 O7 O 0 1 N N N 33.086 2.549 22.031 -2.944 0.582 -0.625 O7 1U0 9 1U0 C7 C7 C 0 1 N N N 32.826 3.947 21.667 -1.555 0.537 -0.291 C7 1U0 10 1U0 C6 C6 C 0 1 N N N 33.475 4.784 22.775 -0.787 1.528 -1.168 C6 1U0 11 1U0 C5 C5 C 0 1 Y N N 33.243 6.259 22.456 0.678 1.480 -0.815 C5 1U0 12 1U0 C4 C4 C 0 1 Y N N 32.542 7.144 23.204 1.579 0.677 -1.380 C4 1U0 13 1U0 CM4 CM4 C 0 1 N N N 31.922 6.994 24.549 1.223 -0.303 -2.468 CM4 1U0 14 1U0 S1 S1 S 0 1 Y N N 33.895 6.891 20.987 1.461 2.482 0.401 S1 1U0 15 1U0 C2 C2 C 0 1 Y N N 33.318 8.544 21.397 3.013 1.725 0.068 C2 1U0 16 1U0 C8 C8 C 0 1 N N R 33.882 9.678 20.524 4.309 2.061 0.759 C8 1U0 17 1U0 O9 O9 O 0 1 N N N 33.137 9.618 19.096 4.087 2.159 2.167 O9 1U0 18 1U0 C3 C3 C 0 1 Y N N 32.598 8.511 22.532 2.868 0.811 -0.892 C3 1U0 19 1U0 "C7'" "C7'" C 0 1 N N N 31.834 9.761 23.095 4.019 -0.016 -1.405 "C7'" 1U0 20 1U0 "C5'" "C5'" C 0 1 Y N N 30.339 9.561 22.902 4.165 -1.254 -0.558 "C5'" 1U0 21 1U0 "C6'" "C6'" C 0 1 Y N N 29.340 9.424 23.865 3.246 -1.548 0.430 "C6'" 1U0 22 1U0 "N1'" "N1'" N 0 1 Y N N 28.049 9.399 23.639 3.406 -2.646 1.156 "N1'" 1U0 23 1U0 "C2'" "C2'" C 0 1 Y N N 27.553 9.476 22.375 4.424 -3.455 0.947 "C2'" 1U0 24 1U0 CM2 CM2 C 0 1 N N N 26.099 9.469 22.152 4.563 -4.692 1.798 CM2 1U0 25 1U0 "N3'" "N3'" N 0 1 Y N N 28.468 9.556 21.329 5.324 -3.214 0.015 "N3'" 1U0 26 1U0 "C4'" "C4'" C 0 1 Y N N 29.771 9.551 21.590 5.229 -2.136 -0.756 "C4'" 1U0 27 1U0 "N4'" "N4'" N 0 1 N N N 30.539 9.787 20.418 6.177 -1.885 -1.735 "N4'" 1U0 28 1U0 C9 C9 C 0 1 N N N 35.221 9.516 20.005 4.836 3.398 0.232 C9 1U0 29 1U0 O10 O10 O 0 1 N N N 36.036 9.270 21.183 6.121 3.660 0.800 O10 1U0 30 1U0 H1 H1 H 0 1 N N N 35.771 -0.647 20.355 -8.941 0.764 -0.367 H1 1U0 31 1U0 H2 H2 H 0 1 N N N 36.341 2.548 18.637 -7.460 -1.953 -0.990 H2 1U0 32 1U0 H3 H3 H 0 1 N N N 32.035 -0.361 21.834 -3.797 -2.095 -1.172 H3 1U0 33 1U0 H4 H4 H 0 1 N N N 33.279 4.181 20.692 -1.425 0.804 0.758 H4 1U0 34 1U0 H5 H5 H 0 1 N N N 31.744 4.139 21.624 -1.173 -0.470 -0.460 H5 1U0 35 1U0 H6 H6 H 0 1 N N N 33.018 4.536 23.745 -0.916 1.261 -2.217 H6 1U0 36 1U0 H7 H7 H 0 1 N N N 34.555 4.577 22.814 -1.169 2.535 -0.999 H7 1U0 37 1U0 H8 H8 H 0 1 N N N 32.675 7.196 25.325 1.259 0.199 -3.435 H8 1U0 38 1U0 H9 H9 H 0 1 N N N 31.090 7.707 24.651 1.934 -1.129 -2.461 H9 1U0 39 1U0 H10 H10 H 0 1 N N N 31.542 5.968 24.665 0.217 -0.688 -2.296 H10 1U0 40 1U0 H11 H11 H 0 1 N N N 33.725 10.660 20.995 5.041 1.278 0.560 H11 1U0 41 1U0 H12 H12 H 0 1 N N N 32.200 9.711 19.223 3.446 2.838 2.418 H12 1U0 42 1U0 H13 H13 H 0 1 N N N 32.055 9.875 24.167 3.828 -0.304 -2.438 H13 1U0 43 1U0 H14 H14 H 0 1 N N N 32.157 10.664 22.556 4.937 0.569 -1.354 H14 1U0 44 1U0 H15 H15 H 0 1 N N N 29.659 9.330 24.892 2.408 -0.891 0.610 H15 1U0 45 1U0 H16 H16 H 0 1 N N N 25.893 9.535 21.074 4.036 -5.520 1.324 H16 1U0 46 1U0 H17 H17 H 0 1 N N N 25.671 8.537 22.551 5.618 -4.944 1.902 H17 1U0 47 1U0 H18 H18 H 0 1 N N N 25.645 10.330 22.665 4.135 -4.505 2.783 H18 1U0 48 1U0 H19 H19 H 0 1 N N N 29.927 9.908 19.637 6.960 -2.454 -1.809 H19 1U0 49 1U0 H20 H20 H 0 1 N N N 31.090 10.613 20.541 6.058 -1.142 -2.347 H20 1U0 50 1U0 H21 H21 H 0 1 N N N 35.270 8.663 19.312 4.921 3.352 -0.854 H21 1U0 51 1U0 H22 H22 H 0 1 N N N 35.551 10.428 19.487 4.147 4.195 0.509 H22 1U0 52 1U0 H23 H23 H 0 1 N N N 36.942 9.151 20.923 6.516 4.493 0.509 H23 1U0 53 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1U0 O1B PB DOUB N N 1 1U0 O9 C8 SING N N 2 1U0 O2B PB SING N N 3 1U0 PB O3A SING N N 4 1U0 PB O3B SING N N 5 1U0 O3A PA SING N N 6 1U0 C9 C8 SING N N 7 1U0 C9 O10 SING N N 8 1U0 "N4'" "C4'" SING N N 9 1U0 C8 C2 SING N N 10 1U0 O1A PA DOUB N N 11 1U0 S1 C2 SING Y N 12 1U0 S1 C5 SING Y N 13 1U0 PA O2A SING N N 14 1U0 PA O7 SING N N 15 1U0 "N3'" "C4'" DOUB Y N 16 1U0 "N3'" "C2'" SING Y N 17 1U0 C2 C3 DOUB Y N 18 1U0 "C4'" "C5'" SING Y N 19 1U0 C7 O7 SING N N 20 1U0 C7 C6 SING N N 21 1U0 CM2 "C2'" SING N N 22 1U0 "C2'" "N1'" DOUB Y N 23 1U0 C5 C6 SING N N 24 1U0 C5 C4 DOUB Y N 25 1U0 C3 "C7'" SING N N 26 1U0 C3 C4 SING Y N 27 1U0 "C5'" "C7'" SING N N 28 1U0 "C5'" "C6'" DOUB Y N 29 1U0 C4 CM4 SING N N 30 1U0 "N1'" "C6'" SING Y N 31 1U0 O3B H1 SING N N 32 1U0 O2B H2 SING N N 33 1U0 O2A H3 SING N N 34 1U0 C7 H4 SING N N 35 1U0 C7 H5 SING N N 36 1U0 C6 H6 SING N N 37 1U0 C6 H7 SING N N 38 1U0 CM4 H8 SING N N 39 1U0 CM4 H9 SING N N 40 1U0 CM4 H10 SING N N 41 1U0 C8 H11 SING N N 42 1U0 O9 H12 SING N N 43 1U0 "C7'" H13 SING N N 44 1U0 "C7'" H14 SING N N 45 1U0 "C6'" H15 SING N N 46 1U0 CM2 H16 SING N N 47 1U0 CM2 H17 SING N N 48 1U0 CM2 H18 SING N N 49 1U0 "N4'" H19 SING N N 50 1U0 "N4'" H20 SING N N 51 1U0 C9 H21 SING N N 52 1U0 C9 H22 SING N N 53 1U0 O10 H23 SING N N 54 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1U0 SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OCCc1sc(c(c1C)Cc2cnc(nc2N)C)C(O)CO" 1U0 InChI InChI 1.03 "InChI=1S/C15H23N3O9P2S/c1-8-11(5-10-6-17-9(2)18-15(10)16)14(12(20)7-19)30-13(8)3-4-26-29(24,25)27-28(21,22)23/h6,12,19-20H,3-5,7H2,1-2H3,(H,24,25)(H2,16,17,18)(H2,21,22,23)/t12-/m1/s1" 1U0 InChIKey InChI 1.03 AZNRIYLXMXTRTE-GFCCVEGCSA-N 1U0 SMILES_CANONICAL CACTVS 3.370 "Cc1ncc(Cc2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[C@H](O)CO)c(N)n1" 1U0 SMILES CACTVS 3.370 "Cc1ncc(Cc2c(C)c(CCO[P](O)(=O)O[P](O)(O)=O)sc2[CH](O)CO)c(N)n1" 1U0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(sc(c1Cc2cnc(nc2N)C)[C@@H](CO)O)CCOP(=O)(O)OP(=O)(O)O" 1U0 SMILES "OpenEye OEToolkits" 1.7.6 "Cc1c(sc(c1Cc2cnc(nc2N)C)C(CO)O)CCOP(=O)(O)OP(=O)(O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1U0 "SYSTEMATIC NAME" ACDLabs 12.01 "2-{4-[(4-amino-2-methylpyrimidin-5-yl)methyl]-5-[(1R)-1,2-dihydroxyethyl]-3-methylthiophen-2-yl}ethyl trihydrogen diphosphate" 1U0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[4-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-5-[(1R)-1,2-bis(oxidanyl)ethyl]-3-methyl-thiophen-2-yl]ethyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1U0 "Create component" 2013-06-05 RCSB 1U0 "Initial release" 2013-08-21 RCSB #