data_1VP # _chem_comp.id 1VP _chem_comp.name "N-(phenylacetyl)glycyl-N~6~-acetyl-L-lysine" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H25 N3 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-21 _chem_comp.pdbx_modified_date 2013-07-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 363.408 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1VP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4L8A _chem_comp.pdbx_subcomponent_list "PAC GLY ALY" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1VP C5 C5 C 0 1 N N N 13.734 -0.483 -9.346 -3.619 0.056 -0.165 C1 PAC 1 1VP C4 C4 C 0 1 N N N 12.605 -0.043 -8.406 -4.828 0.029 -1.064 C2 PAC 2 1VP C3 C3 C 0 1 Y N N 12.999 0.979 -7.328 -5.930 0.851 -0.448 "C1'" PAC 3 1VP C16 C16 C 0 1 Y N N 14.306 1.105 -6.869 -6.032 2.199 -0.738 "C2'" PAC 4 1VP C17 C17 C 0 1 Y N N 14.641 2.031 -5.886 -7.043 2.953 -0.173 "C3'" PAC 5 1VP C C C 0 1 Y N N 13.682 2.863 -5.339 -7.953 2.360 0.682 "C4'" PAC 6 1VP C1 C1 C 0 1 Y N N 12.376 2.755 -5.790 -7.852 1.012 0.972 "C5'" PAC 7 1VP C2 C2 C 0 1 Y N N 12.040 1.819 -6.773 -6.843 0.256 0.403 "C6'" PAC 8 1VP O O O 0 1 N N N 14.753 0.198 -9.411 -3.649 0.681 0.874 O1 PAC 9 1VP N N N 0 1 N N N 13.552 -1.596 -10.110 -2.505 -0.619 -0.513 N GLY 10 1VP C6 C6 C 0 1 N N N 14.538 -2.071 -11.106 -1.330 -0.593 0.361 CA GLY 11 1VP C7 C7 C 0 1 N N N 14.918 -3.545 -10.998 -0.230 -1.421 -0.252 C GLY 12 1VP O1 O1 O 0 1 N N N 15.585 -4.135 -11.855 -0.410 -1.978 -1.314 O GLY 13 1VP O2 O2 O 0 1 N N N 17.462 -9.265 -8.209 6.264 3.925 -0.678 OH ALY 14 1VP C13 C13 C 0 1 N N N 18.115 -8.817 -9.174 6.951 3.200 0.009 CH ALY 15 1VP C14 C14 C 0 1 N N N 18.357 -9.554 -10.478 8.285 3.683 0.516 CH3 ALY 16 1VP N2 N2 N 0 1 N N N 18.643 -7.590 -9.108 6.521 1.961 0.320 NZ ALY 17 1VP C12 C12 C 0 1 N N N 18.520 -6.771 -7.919 5.224 1.490 -0.172 CE ALY 18 1VP C11 C11 C 0 1 N N N 18.008 -5.354 -8.180 4.979 0.063 0.320 CD ALY 19 1VP C10 C10 C 0 1 N N N 16.484 -5.267 -8.248 3.624 -0.428 -0.194 CG ALY 20 1VP C9 C9 C 0 1 N N N 15.945 -6.108 -9.409 3.378 -1.856 0.299 CB ALY 21 1VP C8 C8 C 0 1 N N S 14.541 -5.641 -9.802 2.024 -2.347 -0.215 CA ALY 22 1VP N1 N1 N 0 1 N N N 14.425 -4.186 -9.960 0.954 -1.542 0.380 N ALY 23 1VP C15 C15 C 0 1 N N N 13.518 -6.186 -8.847 1.836 -3.793 0.166 C ALY 24 1VP O3 O3 O 0 1 N N N 13.429 -7.363 -8.608 0.905 -4.118 0.863 O ALY 25 1VP O4 O4 O 0 1 N N N 12.660 -5.373 -8.268 2.704 -4.720 -0.270 OXT ALY 26 1VP H19 H19 H 0 1 N N N 11.808 0.402 -9.020 -4.566 0.443 -2.038 H21 PAC 27 1VP H20 H20 H 0 1 N N N 12.219 -0.939 -7.898 -5.167 -1.000 -1.186 H22 PAC 28 1VP H23 H23 H 0 1 N N N 15.076 0.472 -7.284 -5.321 2.663 -1.406 "H2'" PAC 29 1VP H24 H24 H 0 1 N N N 15.664 2.101 -5.546 -7.122 4.006 -0.399 "H3'" PAC 30 1VP H25 H25 H 0 1 N N N 13.945 3.582 -4.577 -8.743 2.949 1.124 "H4'" PAC 31 1VP H22 H22 H 0 1 N N N 11.612 3.399 -5.379 -8.562 0.548 1.640 "H5'" PAC 32 1VP H21 H21 H 0 1 N N N 11.016 1.747 -7.108 -6.766 -0.798 0.626 "H6'" PAC 33 1VP H18 H18 H 0 1 N N N 12.708 -2.119 -9.992 -2.482 -1.123 -1.342 H GLY 34 1VP H16 H16 H 0 1 N N N 15.455 -1.474 -10.988 -0.988 0.435 0.479 HA2 GLY 35 1VP H17 H17 H 0 1 N N N 14.117 -1.901 -12.108 -1.593 -1.003 1.336 HA3 GLY 36 1VP H12 H12 H 0 1 N N N 17.869 -10.539 -10.439 9.074 3.030 0.143 HH31 ALY 37 1VP H13 H13 H 0 1 N N N 17.939 -8.971 -11.312 8.460 4.701 0.165 HH32 ALY 38 1VP H14 H14 H 0 1 N N N 19.439 -9.686 -10.629 8.287 3.670 1.606 HH33 ALY 39 1VP H11 H11 H 0 1 N N N 19.135 -7.228 -9.900 7.071 1.380 0.870 HZ ALY 40 1VP H9 H9 H 0 1 N N N 17.822 -7.268 -7.229 4.435 2.144 0.201 HE3 ALY 41 1VP H10 H10 H 0 1 N N N 19.511 -6.698 -7.447 5.222 1.504 -1.262 HE2 ALY 42 1VP H7 H7 H 0 1 N N N 18.421 -5.004 -9.137 5.767 -0.591 -0.052 HD3 ALY 43 1VP H8 H8 H 0 1 N N N 18.360 -4.700 -7.368 4.980 0.049 1.410 HD2 ALY 44 1VP H5 H5 H 0 1 N N N 16.188 -4.218 -8.395 2.835 0.225 0.179 HG3 ALY 45 1VP H6 H6 H 0 1 N N N 16.059 -5.639 -7.304 3.622 -0.415 -1.284 HG2 ALY 46 1VP H3 H3 H 0 1 N N N 15.903 -7.164 -9.102 4.167 -2.510 -0.074 HB3 ALY 47 1VP H4 H4 H 0 1 N N N 16.617 -6.004 -10.274 3.380 -1.870 1.389 HB2 ALY 48 1VP H2 H2 H 0 1 N N N 14.328 -6.091 -10.783 1.990 -2.250 -1.301 HCA ALY 49 1VP H15 H15 H 0 1 N N N 13.953 -3.662 -9.251 1.099 -1.097 1.230 H ALY 50 1VP H1 H1 H 0 1 N N N 12.069 -5.874 -7.719 2.542 -5.634 0.000 HXT ALY 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1VP O1 C7 DOUB N N 1 1VP C6 C7 SING N N 2 1VP C6 N SING N N 3 1VP C7 N1 SING N N 4 1VP C14 C13 SING N N 5 1VP N C5 SING N N 6 1VP N1 C8 SING N N 7 1VP C8 C9 SING N N 8 1VP C8 C15 SING N N 9 1VP O C5 DOUB N N 10 1VP C9 C10 SING N N 11 1VP C5 C4 SING N N 12 1VP C13 N2 SING N N 13 1VP C13 O2 DOUB N N 14 1VP N2 C12 SING N N 15 1VP C15 O3 DOUB N N 16 1VP C15 O4 SING N N 17 1VP C4 C3 SING N N 18 1VP C10 C11 SING N N 19 1VP C11 C12 SING N N 20 1VP C3 C16 DOUB Y N 21 1VP C3 C2 SING Y N 22 1VP C16 C17 SING Y N 23 1VP C2 C1 DOUB Y N 24 1VP C17 C DOUB Y N 25 1VP C1 C SING Y N 26 1VP O4 H1 SING N N 27 1VP C8 H2 SING N N 28 1VP C9 H3 SING N N 29 1VP C9 H4 SING N N 30 1VP C10 H5 SING N N 31 1VP C10 H6 SING N N 32 1VP C11 H7 SING N N 33 1VP C11 H8 SING N N 34 1VP C12 H9 SING N N 35 1VP C12 H10 SING N N 36 1VP N2 H11 SING N N 37 1VP C14 H12 SING N N 38 1VP C14 H13 SING N N 39 1VP C14 H14 SING N N 40 1VP N1 H15 SING N N 41 1VP C6 H16 SING N N 42 1VP C6 H17 SING N N 43 1VP N H18 SING N N 44 1VP C4 H19 SING N N 45 1VP C4 H20 SING N N 46 1VP C2 H21 SING N N 47 1VP C1 H22 SING N N 48 1VP C16 H23 SING N N 49 1VP C17 H24 SING N N 50 1VP C H25 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1VP SMILES ACDLabs 12.01 "O=C(NCC(=O)NC(C(=O)O)CCCCNC(=O)C)Cc1ccccc1" 1VP InChI InChI 1.03 "InChI=1S/C18H25N3O5/c1-13(22)19-10-6-5-9-15(18(25)26)21-17(24)12-20-16(23)11-14-7-3-2-4-8-14/h2-4,7-8,15H,5-6,9-12H2,1H3,(H,19,22)(H,20,23)(H,21,24)(H,25,26)/t15-/m0/s1" 1VP InChIKey InChI 1.03 VCECDMBCQWWZKG-HNNXBMFYSA-N 1VP SMILES_CANONICAL CACTVS 3.385 "CC(=O)NCCCC[C@H](NC(=O)CNC(=O)Cc1ccccc1)C(O)=O" 1VP SMILES CACTVS 3.385 "CC(=O)NCCCC[CH](NC(=O)CNC(=O)Cc1ccccc1)C(O)=O" 1VP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)NCCCC[C@@H](C(=O)O)NC(=O)CNC(=O)Cc1ccccc1" 1VP SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NCCCCC(C(=O)O)NC(=O)CNC(=O)Cc1ccccc1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1VP "SYSTEMATIC NAME" ACDLabs 12.01 "N-(phenylacetyl)glycyl-N~6~-acetyl-L-lysine" 1VP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-6-acetamido-2-[2-(2-phenylethanoylamino)ethanoylamino]hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1VP "Create component" 2013-06-21 RCSB 1VP "Initial release" 2013-07-10 RCSB #