data_1VY # _chem_comp.id 1VY _chem_comp.name "1-deoxy-1-(7-hydroxy-6-methyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H16 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-06-24 _chem_comp.pdbx_modified_date 2013-07-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 328.278 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1VY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4L4V _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1VY O7 O7 O 0 1 N N N -88.924 68.368 95.592 0.260 -2.936 -0.826 O7 1VY 1 1VY C7 C7 C 0 1 N N N -90.085 67.855 95.085 1.109 -1.946 -0.486 C7 1VY 2 1VY C6 C6 C 0 1 N N N -90.835 68.703 94.274 2.365 -2.255 0.031 C6 1VY 3 1VY C9 C9 C 0 1 N N N -90.403 70.033 94.051 2.759 -3.698 0.210 C9 1VY 4 1VY N5 N5 N 0 1 N N N -91.966 68.234 93.706 3.214 -1.305 0.364 N5 1VY 5 1VY C4A C4A C 0 1 N N N -92.365 66.953 93.909 2.889 -0.030 0.215 C4A 1VY 6 1VY C4 C4 C 0 1 N N N -93.591 66.490 93.403 3.817 1.053 0.579 C4 1VY 7 1VY O4 O4 O 0 1 N N N -94.358 67.258 92.812 4.921 0.813 1.032 O4 1VY 8 1VY N3 N3 N 0 1 N N N -94.022 65.243 93.717 3.397 2.325 0.391 N3 1VY 9 1VY C2 C2 C 0 1 N N N -93.235 64.414 94.458 2.176 2.574 -0.110 C2 1VY 10 1VY O2 O2 O 0 1 N N N -93.552 63.241 94.673 1.837 3.735 -0.263 O2 1VY 11 1VY N1 N1 N 0 1 N N N -92.059 64.858 94.959 1.320 1.616 -0.446 N1 1VY 12 1VY C8A C8A C 0 1 N N N -91.601 66.106 94.722 1.622 0.331 -0.306 C8A 1VY 13 1VY N8 N8 N 0 1 N N N -90.450 66.571 95.294 0.740 -0.655 -0.653 N8 1VY 14 1VY "C1'" "C1'" C 0 1 N N N -89.691 65.784 96.296 -0.576 -0.319 -1.202 "C1'" 1VY 15 1VY "C2'" "C2'" C 0 1 N N S -88.465 65.008 95.855 -1.586 -0.187 -0.060 "C2'" 1VY 16 1VY "O2'" "O2'" O 0 1 N N N -87.633 65.809 94.980 -1.666 -1.425 0.650 "O2'" 1VY 17 1VY "C3'" "C3'" C 0 1 N N S -88.879 63.678 95.219 -2.961 0.163 -0.632 "C3'" 1VY 18 1VY "O3'" "O3'" O 0 1 N N N -90.106 63.152 95.823 -2.880 1.401 -1.342 "O3'" 1VY 19 1VY "C4'" "C4'" C 0 1 N N R -87.715 62.657 95.237 -3.970 0.295 0.510 "C4'" 1VY 20 1VY "O4'" "O4'" O 0 1 N N N -88.151 61.580 94.456 -4.051 -0.943 1.219 "O4'" 1VY 21 1VY "C5'" "C5'" C 0 1 N N N -87.476 62.078 96.622 -5.345 0.645 -0.063 "C5'" 1VY 22 1VY "O5'" "O5'" O 0 1 N N N -86.091 61.978 97.021 -6.261 0.883 1.008 "O5'" 1VY 23 1VY H1 H1 H 0 1 N N N -91.115 70.544 93.386 3.243 -4.058 -0.698 H1 1VY 24 1VY H2 H2 H 0 1 N N N -90.351 70.567 95.011 3.451 -3.784 1.049 H2 1VY 25 1VY H3 H3 H 0 1 N N N -89.407 70.021 93.583 1.870 -4.295 0.410 H3 1VY 26 1VY H5 H5 H 0 1 N N N -94.919 64.932 93.404 3.983 3.063 0.620 H5 1VY 27 1VY H6 H6 H 0 1 N N N -89.363 66.488 97.075 -0.514 0.625 -1.743 H6 1VY 28 1VY H7 H7 H 0 1 N N N -90.392 65.057 96.731 -0.898 -1.107 -1.882 H7 1VY 29 1VY H8 H8 H 0 1 N N N -87.884 64.770 96.758 -1.264 0.601 0.621 H8 1VY 30 1VY H9 H9 H 0 1 N N N -87.403 66.621 95.417 -1.948 -2.173 0.106 H9 1VY 31 1VY H10 H10 H 0 1 N N N -89.095 63.887 94.161 -3.282 -0.625 -1.312 H10 1VY 32 1VY H11 H11 H 0 1 N N N -90.786 63.814 95.787 -2.598 2.149 -0.797 H11 1VY 33 1VY H12 H12 H 0 1 N N N -86.797 63.118 94.845 -3.648 1.084 1.190 H12 1VY 34 1VY H13 H13 H 0 1 N N N -87.474 60.914 94.428 -4.332 -1.691 0.675 H13 1VY 35 1VY H14 H14 H 0 1 N N N -87.994 62.718 97.351 -5.265 1.542 -0.678 H14 1VY 36 1VY H15 H15 H 0 1 N N N -87.910 61.068 96.647 -5.706 -0.183 -0.673 H15 1VY 37 1VY H16 H16 H 0 1 N N N -86.039 61.608 97.894 -7.155 1.111 0.718 H16 1VY 38 1VY H17 H17 H 0 1 N N N -88.494 67.711 96.127 0.567 -3.843 -0.689 H17 1VY 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1VY O4 C4 DOUB N N 1 1VY C4 N3 SING N N 2 1VY C4 C4A SING N N 3 1VY N5 C4A DOUB N N 4 1VY N5 C6 SING N N 5 1VY N3 C2 SING N N 6 1VY C4A C8A SING N N 7 1VY C9 C6 SING N N 8 1VY C6 C7 DOUB N N 9 1VY "O4'" "C4'" SING N N 10 1VY C2 O2 DOUB N N 11 1VY C2 N1 SING N N 12 1VY C8A N1 DOUB N N 13 1VY C8A N8 SING N N 14 1VY "O2'" "C2'" SING N N 15 1VY C7 N8 SING N N 16 1VY C7 O7 SING N N 17 1VY "C3'" "C4'" SING N N 18 1VY "C3'" "O3'" SING N N 19 1VY "C3'" "C2'" SING N N 20 1VY "C4'" "C5'" SING N N 21 1VY N8 "C1'" SING N N 22 1VY "C2'" "C1'" SING N N 23 1VY "C5'" "O5'" SING N N 24 1VY C9 H1 SING N N 25 1VY C9 H2 SING N N 26 1VY C9 H3 SING N N 27 1VY N3 H5 SING N N 28 1VY "C1'" H6 SING N N 29 1VY "C1'" H7 SING N N 30 1VY "C2'" H8 SING N N 31 1VY "O2'" H9 SING N N 32 1VY "C3'" H10 SING N N 33 1VY "O3'" H11 SING N N 34 1VY "C4'" H12 SING N N 35 1VY "O4'" H13 SING N N 36 1VY "C5'" H14 SING N N 37 1VY "C5'" H15 SING N N 38 1VY "O5'" H16 SING N N 39 1VY O7 H17 SING N N 40 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1VY SMILES ACDLabs 12.01 "O=C1C2=NC(=C(O)N(C2=NC(=O)N1)CC(O)C(O)C(O)CO)C" 1VY InChI InChI 1.03 "InChI=1S/C12H16N4O7/c1-4-11(22)16(2-5(18)8(20)6(19)3-17)9-7(13-4)10(21)15-12(23)14-9/h5-6,8,17-20,22H,2-3H2,1H3,(H,15,21,23)/t5-,6+,8-/m0/s1" 1VY InChIKey InChI 1.03 COXMGTTXHPRZBO-BBVRLYRLSA-N 1VY SMILES_CANONICAL CACTVS 3.385 "CC1=C(O)N(C[C@H](O)[C@H](O)[C@H](O)CO)C2=NC(=O)NC(=O)C2=N1" 1VY SMILES CACTVS 3.385 "CC1=C(O)N(C[CH](O)[CH](O)[CH](O)CO)C2=NC(=O)NC(=O)C2=N1" 1VY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC1=C(N(C2=NC(=O)NC(=O)C2=N1)C[C@@H]([C@@H]([C@@H](CO)O)O)O)O" 1VY SMILES "OpenEye OEToolkits" 1.7.6 "CC1=C(N(C2=NC(=O)NC(=O)C2=N1)CC(C(C(CO)O)O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1VY "SYSTEMATIC NAME" ACDLabs 12.01 "1-deoxy-1-(7-hydroxy-6-methyl-2,4-dioxo-3,4-dihydropteridin-8(2H)-yl)-D-ribitol" 1VY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "6-methyl-7-oxidanyl-8-[(2S,3S,4R)-2,3,4,5-tetrakis(oxidanyl)pentyl]pteridine-2,4-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1VY "Create component" 2013-06-24 RCSB 1VY "Modify formula" 2013-06-25 RCSB 1VY "Other modification" 2013-07-11 RCSB 1VY "Initial release" 2013-07-17 RCSB #