data_1WA # _chem_comp.id 1WA _chem_comp.name "2-amino-8-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-4-hydroxy-1H-imidazo[1,2-a][1,3,5]triazine-5,8-diium" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H16 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 2 _chem_comp.pdbx_initial_date 2013-06-28 _chem_comp.pdbx_modified_date 2015-05-22 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 349.237 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1WA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4KZR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1WA OP3 OP3 O 0 1 N Y N 27.791 -5.608 13.760 -6.112 -0.098 0.377 OP3 1WA 1 1WA P P P 0 1 N N N 29.035 -5.748 12.812 -4.863 -1.108 0.268 P 1WA 2 1WA N1 N1 N 0 1 Y N N 22.149 -10.795 8.439 5.305 -0.796 0.703 N1 1WA 3 1WA C2 C2 C 0 1 Y N N 23.111 -11.725 8.406 4.610 -0.075 1.572 C2 1WA 4 1WA N2 N2 N 0 1 N N N 22.831 -12.914 7.803 5.153 0.242 2.785 N2 1WA 5 1WA N3 N3 N 0 1 Y N N 24.339 -11.364 8.827 3.358 0.349 1.256 N3 1WA 6 1WA C4 C4 C 0 1 Y N N 24.541 -10.155 9.403 2.829 0.016 0.019 C4 1WA 7 1WA N5 N5 N 1 1 Y N N 23.554 -9.235 9.502 3.568 -0.716 -0.833 N5 1WA 8 1WA C6 C6 C 0 1 Y N N 22.400 -9.546 8.922 4.799 -1.115 -0.480 C6 1WA 9 1WA O6 O6 O 0 1 N N N 21.288 -8.884 9.015 5.533 -1.850 -1.341 O6 1WA 10 1WA C7 C7 C 0 1 Y N N 24.142 -8.135 10.131 2.839 -0.904 -1.952 C7 1WA 11 1WA C8 C8 C 0 1 Y N N 25.345 -8.381 10.363 1.652 -0.277 -1.769 C8 1WA 12 1WA N9 N9 N 1 1 Y N N 25.645 -9.625 10.047 1.668 0.282 -0.552 N9 1WA 13 1WA "C1'" "C1'" C 0 1 N N R 26.902 -10.279 10.126 0.579 1.057 0.047 "C1'" 1WA 14 1WA "C2'" "C2'" C 0 1 N N N 27.713 -9.752 8.975 0.292 2.321 -0.794 "C2'" 1WA 15 1WA "C3'" "C3'" C 0 1 N N S 28.929 -9.027 9.639 -1.243 2.475 -0.729 "C3'" 1WA 16 1WA "O3'" "O3'" O 0 1 N N N 30.168 -9.379 9.060 -1.597 3.715 -0.113 "O3'" 1WA 17 1WA "C4'" "C4'" C 0 1 N N R 28.911 -9.375 11.098 -1.704 1.286 0.144 "C4'" 1WA 18 1WA "O4'" "O4'" O 0 1 N N N 27.577 -9.735 11.276 -0.653 0.304 0.013 "O4'" 1WA 19 1WA "C5'" "C5'" C 0 1 N N N 29.222 -8.403 12.228 -3.027 0.723 -0.378 "C5'" 1WA 20 1WA "O5'" "O5'" O 0 1 N N N 28.584 -7.167 12.069 -3.493 -0.296 0.509 "O5'" 1WA 21 1WA OP1 OP1 O 0 1 N N N 30.311 -5.774 13.605 -5.006 -2.261 1.383 OP1 1WA 22 1WA OP2 OP2 O 0 1 N N N 28.804 -4.601 11.962 -4.842 -1.723 -1.078 OP2 1WA 23 1WA HOP3 HOP3 H 0 0 N Y N 27.282 -4.848 13.505 -6.188 0.342 1.235 HOP3 1WA 24 1WA HN2 HN2 H 0 1 N N N 21.892 -12.901 7.460 6.047 -0.061 3.010 HN2 1WA 25 1WA HN2A HN2A H 0 0 N N N 23.462 -13.058 7.041 4.645 0.769 3.421 HN2A 1WA 26 1WA HN3 HN3 H 0 1 N N N 25.107 -11.994 8.713 2.843 0.877 1.886 HN3 1WA 27 1WA H7 H7 H 0 1 N N N 23.635 -7.214 10.379 3.145 -1.452 -2.831 H7 1WA 28 1WA H8 H8 H 0 1 N N N 26.047 -7.668 10.769 0.838 -0.234 -2.478 H8 1WA 29 1WA "H1'" "H1'" H 0 1 N N N 26.837 -11.377 10.130 0.828 1.330 1.073 "H1'" 1WA 30 1WA "H2'" "H2'" H 0 1 N N N 28.057 -10.577 8.334 0.783 3.190 -0.356 "H2'" 1WA 31 1WA "H2'A" "H2'A" H 0 0 N N N 27.121 -9.045 8.376 0.618 2.176 -1.824 "H2'A" 1WA 32 1WA "H3'" "H3'" H 0 1 N N N 28.768 -7.944 9.538 -1.677 2.406 -1.727 "H3'" 1WA 33 1WA "HO3'" "HO3'" H 0 0 N Y N 30.868 -8.911 9.500 -1.279 4.495 -0.588 "HO3'" 1WA 34 1WA "H4'" "H4'" H 0 1 N N N 29.547 -10.261 11.240 -1.806 1.596 1.184 "H4'" 1WA 35 1WA "H5'" "H5'" H 0 1 N N N 28.892 -8.850 13.177 -3.766 1.523 -0.432 "H5'" 1WA 36 1WA "H5'A" "H5'A" H 0 0 N N N 30.309 -8.236 12.260 -2.876 0.300 -1.371 "H5'A" 1WA 37 1WA HOP1 HOP1 H 0 0 N N N 30.813 -4.988 13.424 -5.810 -2.791 1.299 HOP1 1WA 38 1WA HO6 HO6 H 0 1 N N N 20.568 -9.431 8.724 6.406 -2.092 -1.005 HO6 1WA 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1WA P OP3 SING N N 1 1WA OP3 HOP3 SING N N 2 1WA OP2 P DOUB N N 3 1WA "O5'" P SING N N 4 1WA P OP1 SING N N 5 1WA C2 N1 DOUB Y N 6 1WA N1 C6 SING Y N 7 1WA N2 C2 SING N N 8 1WA C2 N3 SING Y N 9 1WA N2 HN2 SING N N 10 1WA N2 HN2A SING N N 11 1WA N3 C4 SING Y N 12 1WA N3 HN3 SING N N 13 1WA C4 N5 SING Y N 14 1WA C4 N9 DOUB Y N 15 1WA C6 N5 DOUB Y N 16 1WA N5 C7 SING Y N 17 1WA C6 O6 SING N N 18 1WA C7 C8 DOUB Y N 19 1WA C7 H7 SING N N 20 1WA N9 C8 SING Y N 21 1WA C8 H8 SING N N 22 1WA N9 "C1'" SING N N 23 1WA "C2'" "C1'" SING N N 24 1WA "C1'" "O4'" SING N N 25 1WA "C1'" "H1'" SING N N 26 1WA "C2'" "C3'" SING N N 27 1WA "C2'" "H2'" SING N N 28 1WA "C2'" "H2'A" SING N N 29 1WA "O3'" "C3'" SING N N 30 1WA "C3'" "C4'" SING N N 31 1WA "C3'" "H3'" SING N N 32 1WA "O3'" "HO3'" SING N N 33 1WA "C4'" "O4'" SING N N 34 1WA "C4'" "C5'" SING N N 35 1WA "C4'" "H4'" SING N N 36 1WA "O5'" "C5'" SING N N 37 1WA "C5'" "H5'" SING N N 38 1WA "C5'" "H5'A" SING N N 39 1WA OP1 HOP1 SING N N 40 1WA O6 HO6 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1WA SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC([n+]2c1NC(=NC(O)=[n+]1cc2)N)CC3O" 1WA InChI InChI 1.03 "InChI=1S/C10H14N5O7P/c11-8-12-9-14(1-2-15(9)10(17)13-8)7-3-5(16)6(22-7)4-21-23(18,19)20/h1-2,5-7,16H,3-4H2,(H4,11,13,17,18,19,20)/p+2/t5-,6+,7+/m0/s1" 1WA InChIKey InChI 1.03 ZQGLFPASUDBGAQ-RRKCRQDMSA-P 1WA SMILES_CANONICAL CACTVS 3.385 "Nc1[nH]c2[n+](cc[n+]2c(O)n1)[C@H]3C[C@H](O)[C@@H](CO[P](O)(O)=O)O3" 1WA SMILES CACTVS 3.385 "Nc1[nH]c2[n+](cc[n+]2c(O)n1)[CH]3C[CH](O)[CH](CO[P](O)(O)=O)O3" 1WA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c[n+]-2c(nc([nH]c2[n+]1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N)O" 1WA SMILES "OpenEye OEToolkits" 1.7.6 "c1c[n+]-2c(nc([nH]c2[n+]1C3CC(C(O3)COP(=O)(O)O)O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1WA "SYSTEMATIC NAME" ACDLabs 12.01 "2-amino-8-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-4-hydroxy-1H-imidazo[1,2-a][1,3,5]triazine-5,8-diium" 1WA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-5-(2-azanyl-4-oxidanyl-1H-imidazo[1,2-a][1,3,5]triazine-5,8-diium-8-yl)-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1WA "Create component" 2013-06-28 RCSB 1WA "Modify leaving atom flag" 2014-10-17 RCSB 1WA "Other modification" 2014-10-29 RCSB 1WA "Initial release" 2015-05-27 RCSB #