data_1X9 # _chem_comp.id 1X9 _chem_comp.name Cerulenin _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H17 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(2R,3S)-3-[(4E,7E)-nona-4,7-dienoyl]oxirane-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-08-27 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 223.268 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1X9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4LS7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1X9 O1 O1 O 0 1 N N N -4.048 -12.035 15.375 -1.355 1.764 -0.391 O1 1X9 1 1X9 C1 C1 C 0 1 N N N -3.292 -12.727 14.690 -2.513 1.717 -0.033 C1 1X9 2 1X9 N N N 0 1 N N N -3.577 -13.149 13.465 -2.911 2.408 1.053 N 1X9 3 1X9 C2 C2 C 0 1 N N R -1.957 -13.155 15.283 -3.508 0.892 -0.809 C2 1X9 4 1X9 O2 O2 O 0 1 N N N -1.121 -14.034 14.539 -4.376 0.031 -0.071 O2 1X9 5 1X9 C3 C3 C 0 1 N N S -1.689 -14.512 15.795 -3.336 -0.628 -0.796 C3 1X9 6 1X9 "C1'" "C1'" C 0 1 N N N -2.348 -15.867 15.531 -2.184 -1.198 -0.010 "C1'" 1X9 7 1X9 "O1'" "O1'" O 0 1 N N N -3.479 -16.081 15.131 -2.370 -1.640 1.099 "O1'" 1X9 8 1X9 "C2'" "C2'" C 0 1 N N N -1.354 -16.986 15.703 -0.801 -1.218 -0.607 "C2'" 1X9 9 1X9 "C3'" "C3'" C 0 1 N N N -2.085 -18.291 15.992 0.197 -1.730 0.434 "C3'" 1X9 10 1X9 "C4'" "C4'" C 0 1 N N N -2.243 -18.495 17.445 1.580 -1.749 -0.163 "C4'" 1X9 11 1X9 "C5'" "C5'" C 0 1 N N N -1.605 -19.397 18.137 2.560 -1.116 0.432 "C5'" 1X9 12 1X9 "C6'" "C6'" C 0 1 N N N -1.690 -19.669 19.604 3.944 -1.135 -0.165 "C6'" 1X9 13 1X9 "C7'" "C7'" C 0 1 N N N -0.303 -19.982 20.082 4.427 0.279 -0.359 "C7'" 1X9 14 1X9 "C8'" "C8'" C 0 1 N N N 0.619 -20.378 19.235 5.565 0.660 0.166 "C8'" 1X9 15 1X9 "C9'" "C9'" C 0 1 N N N 2.042 -20.715 19.551 6.048 2.075 -0.029 "C9'" 1X9 16 1X9 H1 H1 H 0 1 N N N -4.451 -12.907 13.044 -3.820 2.317 1.379 H1 1X9 17 1X9 H2 H2 H 0 1 N N N -2.918 -13.709 12.963 -2.289 2.996 1.510 H2 1X9 18 1X9 H3 H3 H 0 1 N N N -1.436 -12.352 15.824 -3.898 1.352 -1.716 H3 1X9 19 1X9 H4 H4 H 0 1 N N N -0.974 -14.539 16.630 -3.614 -1.177 -1.696 H4 1X9 20 1X9 H5 H5 H 0 1 N N N -0.765 -17.095 14.781 -0.789 -1.876 -1.476 H5 1X9 21 1X9 H6 H6 H 0 1 N N N -0.682 -16.751 16.542 -0.522 -0.209 -0.912 H6 1X9 22 1X9 H7 H7 H 0 1 N N N -3.079 -18.259 15.523 0.185 -1.072 1.303 H7 1X9 23 1X9 H8 H8 H 0 1 N N N -1.508 -19.128 15.571 -0.082 -2.739 0.738 H8 1X9 24 1X9 H9 H9 H 0 1 N N N -2.934 -17.853 17.971 1.764 -2.286 -1.082 H9 1X9 25 1X9 H10 H10 H 0 1 N N N -0.929 -20.028 17.579 2.376 -0.579 1.352 H10 1X9 26 1X9 H11 H11 H 0 1 N N N -2.078 -18.784 20.129 4.622 -1.662 0.507 H11 1X9 27 1X9 H12 H12 H 0 1 N N N -2.354 -20.526 19.790 3.917 -1.646 -1.127 H12 1X9 28 1X9 H13 H13 H 0 1 N N N -0.061 -19.881 21.130 3.835 0.978 -0.932 H13 1X9 29 1X9 H14 H14 H 0 1 N N N 0.319 -20.470 18.202 6.157 -0.038 0.738 H14 1X9 30 1X9 H15 H15 H 0 1 N N N 2.562 -21.013 18.629 7.005 2.204 0.476 H15 1X9 31 1X9 H16 H16 H 0 1 N N N 2.540 -19.835 19.984 6.169 2.274 -1.094 H16 1X9 32 1X9 H17 H17 H 0 1 N N N 2.071 -21.545 20.273 5.319 2.768 0.390 H17 1X9 33 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1X9 N C1 SING N N 1 1X9 O2 C2 SING N N 2 1X9 O2 C3 SING N N 3 1X9 C1 C2 SING N N 4 1X9 C1 O1 DOUB N N 5 1X9 "O1'" "C1'" DOUB N N 6 1X9 C2 C3 SING N N 7 1X9 "C1'" "C2'" SING N N 8 1X9 "C1'" C3 SING N N 9 1X9 "C2'" "C3'" SING N N 10 1X9 "C3'" "C4'" SING N N 11 1X9 "C4'" "C5'" DOUB N E 12 1X9 "C5'" "C6'" SING N N 13 1X9 "C8'" "C9'" SING N N 14 1X9 "C8'" "C7'" DOUB N E 15 1X9 "C6'" "C7'" SING N N 16 1X9 N H1 SING N N 17 1X9 N H2 SING N N 18 1X9 C2 H3 SING N N 19 1X9 C3 H4 SING N N 20 1X9 "C2'" H5 SING N N 21 1X9 "C2'" H6 SING N N 22 1X9 "C3'" H7 SING N N 23 1X9 "C3'" H8 SING N N 24 1X9 "C4'" H9 SING N N 25 1X9 "C5'" H10 SING N N 26 1X9 "C6'" H11 SING N N 27 1X9 "C6'" H12 SING N N 28 1X9 "C7'" H13 SING N N 29 1X9 "C8'" H14 SING N N 30 1X9 "C9'" H15 SING N N 31 1X9 "C9'" H16 SING N N 32 1X9 "C9'" H17 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1X9 SMILES ACDLabs 12.01 "O=C(CC/C=C/C/C=C/C)C1OC1C(=O)N" 1X9 InChI InChI 1.03 "InChI=1S/C12H17NO3/c1-2-3-4-5-6-7-8-9(14)10-11(16-10)12(13)15/h2-3,5-6,10-11H,4,7-8H2,1H3,(H2,13,15)/b3-2+,6-5+/t10-,11-/m1/s1" 1X9 InChIKey InChI 1.03 GVEZIHKRYBHEFX-NQQPLRFYSA-N 1X9 SMILES_CANONICAL CACTVS 3.385 "C\C=C\C/C=C/CCC(=O)[C@H]1O[C@H]1C(N)=O" 1X9 SMILES CACTVS 3.385 "CC=CCC=CCCC(=O)[CH]1O[CH]1C(N)=O" 1X9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C=C/C/C=C/CCC(=O)[C@@H]1[C@@H](O1)C(=O)N" 1X9 SMILES "OpenEye OEToolkits" 1.7.6 "CC=CCC=CCCC(=O)C1C(O1)C(=O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1X9 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3S)-3-[(4E,7E)-nona-4,7-dienoyl]oxirane-2-carboxamide" 1X9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3S)-3-[(4E,7E)-nona-4,7-dienoyl]oxirane-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1X9 "Create component" 2013-08-27 RCSB 1X9 "Modify name" 2014-03-24 RCSB 1X9 "Initial release" 2014-04-02 RCSB 1X9 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 1X9 _pdbx_chem_comp_synonyms.name "(2R,3S)-3-[(4E,7E)-nona-4,7-dienoyl]oxirane-2-carboxamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##