data_1XG # _chem_comp.id 1XG _chem_comp.name "(3R,7E,10E)-3-hydroxy-4-oxododeca-7,10-dienamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-07-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 225.284 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1XG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4LS8 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1XG C1 C1 C 0 1 N N N N N N 15.798 17.410 49.420 4.599 1.076 0.260 C1 1XG 1 1XG N1 N1 N 0 1 N N N N N N 16.915 16.670 49.339 5.451 1.490 1.220 N1 1XG 2 1XG O1 O1 O 0 1 N N N N N N 14.845 17.272 53.444 1.410 -2.138 -0.420 O1 1XG 3 1XG C2 C2 C 0 1 N N N N N N 15.332 17.765 50.818 3.444 0.176 0.615 C2 1XG 4 1XG O2 O2 O 0 1 N N N N N N 15.180 17.822 48.444 4.760 1.433 -0.888 O2 1XG 5 1XG C3 C3 C 0 1 N N R N N N 14.077 16.985 51.233 2.639 -0.142 -0.647 C3 1XG 6 1XG O3 O3 O 0 1 N N N N N N 14.298 15.590 51.096 3.447 -0.901 -1.548 O3 1XG 7 1XG C4 C4 C 0 1 N N N N N N 13.903 17.089 52.713 1.416 -0.940 -0.275 C4 1XG 8 1XG C5 C5 C 0 1 N N N N N N 12.529 16.906 53.281 0.201 -0.242 0.279 C5 1XG 9 1XG C6 C6 C 0 1 N N N N N N 12.520 15.984 54.477 -0.891 -1.273 0.571 C6 1XG 10 1XG C7 C7 C 0 1 N N N N N N 11.671 16.761 55.422 -2.106 -0.575 1.125 C7 1XG 11 1XG C8 C8 C 0 1 N N N N N N 10.376 16.968 55.225 -3.273 -0.737 0.551 C8 1XG 12 1XG C9 C9 C 0 1 N N N N N N 9.664 17.829 56.235 -4.488 -0.039 1.105 C9 1XG 13 1XG C10 C10 C 0 1 N N N N N N 10.486 17.983 57.492 -5.140 0.774 0.016 C10 1XG 14 1XG C11 C11 C 0 1 N N N N N N 10.579 19.170 58.076 -6.406 0.591 -0.268 C11 1XG 15 1XG C12 C12 C 0 1 N N N N N N 11.394 19.331 59.343 -7.058 1.404 -1.357 C12 1XG 16 1XG H1 H1 H 0 1 N N N N N N 17.289 16.425 48.444 5.320 1.208 2.139 H1 1XG 17 1XG H2 H2 H 0 1 N N N N N N 17.374 16.364 50.173 6.194 2.069 0.991 H2 1XG 18 1XG H3 H3 H 0 1 N N N N N N 16.140 17.537 51.528 3.824 -0.750 1.046 H3 1XG 19 1XG H4 H4 H 0 1 N N N N N N 15.106 18.841 50.852 2.802 0.678 1.339 H4 1XG 20 1XG H5 H5 H 0 1 N N N N N N 13.189 17.338 50.689 2.334 0.788 -1.128 H5 1XG 21 1XG H6 H6 H 0 1 N N N N N N 14.665 15.246 51.902 3.755 -1.743 -1.186 H6 1XG 22 1XG H7 H7 H 0 1 N N N N N N 12.140 17.888 53.589 0.467 0.276 1.200 H7 1XG 23 1XG H8 H8 H 0 1 N N N N N N 11.878 16.481 52.502 -0.167 0.480 -0.451 H8 1XG 24 1XG H9 H9 H 0 1 N N N N N N 12.069 15.011 54.234 -1.158 -1.791 -0.350 H9 1XG 25 1XG H10 H10 H 0 1 N N N N N N 13.533 15.829 54.877 -0.523 -1.995 1.301 H10 1XG 26 1XG H11 H11 H 0 1 N N N N N N 12.131 17.175 56.308 -2.016 0.059 1.995 H11 1XG 27 1XG H12 H12 H 0 1 N N N N N N 9.857 16.540 54.381 -3.364 -1.371 -0.318 H12 1XG 28 1XG H13 H13 H 0 1 N N N N N N 9.486 18.823 55.798 -5.195 -0.780 1.478 H13 1XG 29 1XG H14 H14 H 0 1 N N N N N N 8.701 17.362 56.490 -4.189 0.620 1.920 H14 1XG 30 1XG H15 H15 H 0 1 N N N N N N 10.996 17.130 57.914 -4.564 1.506 -0.530 H15 1XG 31 1XG H16 H16 H 0 1 N N N N N N 10.073 20.023 57.648 -6.982 -0.141 0.277 H16 1XG 32 1XG H17 H17 H 0 1 N N N N N N 11.353 20.379 59.676 -6.994 2.463 -1.108 H17 1XG 33 1XG H18 H18 H 0 1 N N N N N N 10.982 18.680 60.129 -6.547 1.221 -2.303 H18 1XG 34 1XG H19 H19 H 0 1 N N N N N N 12.439 19.050 59.145 -8.105 1.115 -1.449 H19 1XG 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1XG O2 C1 DOUB N N 1 1XG N1 C1 SING N N 2 1XG C1 C2 SING N N 3 1XG C2 C3 SING N N 4 1XG O3 C3 SING N N 5 1XG C3 C4 SING N N 6 1XG C4 C5 SING N N 7 1XG C4 O1 DOUB N N 8 1XG C5 C6 SING N N 9 1XG C6 C7 SING N N 10 1XG C8 C7 DOUB N E 11 1XG C8 C9 SING N N 12 1XG C9 C10 SING N N 13 1XG C10 C11 DOUB N E 14 1XG C11 C12 SING N N 15 1XG N1 H1 SING N N 16 1XG N1 H2 SING N N 17 1XG C2 H3 SING N N 18 1XG C2 H4 SING N N 19 1XG C3 H5 SING N N 20 1XG O3 H6 SING N N 21 1XG C5 H7 SING N N 22 1XG C5 H8 SING N N 23 1XG C6 H9 SING N N 24 1XG C6 H10 SING N N 25 1XG C7 H11 SING N N 26 1XG C8 H12 SING N N 27 1XG C9 H13 SING N N 28 1XG C9 H14 SING N N 29 1XG C10 H15 SING N N 30 1XG C11 H16 SING N N 31 1XG C12 H17 SING N N 32 1XG C12 H18 SING N N 33 1XG C12 H19 SING N N 34 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1XG SMILES ACDLabs 12.01 "O=C(CC/C=C/C/C=C/C)C(O)CC(=O)N" 1XG InChI InChI 1.03 "InChI=1S/C12H19NO3/c1-2-3-4-5-6-7-8-10(14)11(15)9-12(13)16/h2-3,5-6,11,15H,4,7-9H2,1H3,(H2,13,16)/b3-2+,6-5+/t11-/m1/s1" 1XG InChIKey InChI 1.03 QEPYZBPOTYDXNA-IZFUEKCOSA-N 1XG SMILES_CANONICAL CACTVS 3.385 "C\C=C\C\C=C\CCC(=O)[C@H](O)CC(N)=O" 1XG SMILES CACTVS 3.385 "CC=CCC=CCCC(=O)[CH](O)CC(N)=O" 1XG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C/C=C/C/C=C/CCC(=O)[C@@H](CC(=O)N)O" 1XG SMILES "OpenEye OEToolkits" 1.7.6 "CC=CCC=CCCC(=O)C(CC(=O)N)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1XG "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,7E,10E)-3-hydroxy-4-oxododeca-7,10-dienamide" 1XG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3R,7E,10E)-3-oxidanyl-4-oxidanylidene-dodeca-7,10-dienamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1XG "Create component" 2013-07-26 RCSB 1XG "Initial release" 2014-04-02 RCSB 1XG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 1XG _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C3 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #