data_1YH # _chem_comp.id 1YH _chem_comp.name "(3S,8aR)-N-((R)-chroman-4-yl)-2-((S)-2-cyclohexyl-2-((S)-2-(methylamino)propanamido)acetyl)octahydropyrrolo[1,2-a]pyrazine-3-carboxamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H43 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-08-02 _chem_comp.pdbx_modified_date 2022-12-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 525.683 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1YH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4LGU _chem_comp.pdbx_subcomponent_list "MAA CHG 1Y4 1XY" _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1YH N2 N2 N 0 1 N N N 3.157 -7.359 -41.838 7.146 -0.534 1.211 N MAA 1 1YH C1 C1 C 0 1 N N N 3.592 -6.082 -42.439 8.145 -1.556 1.553 CM MAA 2 1YH C3 C3 C 0 1 N N S 4.046 -7.828 -40.752 5.792 -0.986 1.556 CA MAA 3 1YH C5 C5 C 0 1 N N N 3.352 -8.840 -39.833 5.509 -0.674 3.027 CB MAA 4 1YH C6 C6 C 0 1 N N N 5.340 -8.398 -41.305 4.788 -0.270 0.689 C MAA 5 1YH O7 O7 O 0 1 N N N 5.462 -8.793 -42.456 5.164 0.536 -0.135 O MAA 6 1YH N8 N8 N 0 1 N N N 6.382 -8.424 -40.470 3.472 -0.527 0.829 N CHG 7 1YH C9 C9 C 0 1 N N S 7.704 -8.881 -40.848 2.496 0.169 -0.014 CA CHG 8 1YH C17 C17 C 0 1 N N N 8.111 -9.919 -39.832 1.164 0.209 0.689 C CHG 9 1YH O18 O18 O 0 1 N N N 7.556 -9.868 -38.749 0.924 -0.579 1.579 O CHG 10 1YH C11 C11 C 0 1 N N N 8.423 -7.528 -40.797 2.349 -0.574 -1.343 C1 CHG 11 1YH C12 C12 C 0 1 N N N 9.517 -7.364 -39.732 3.667 -0.499 -2.118 C2 CHG 12 1YH C13 C13 C 0 1 N N N 10.080 -5.936 -39.757 3.520 -1.242 -3.447 C3 CHG 13 1YH C14 C14 C 0 1 N N N 10.469 -5.450 -41.159 3.170 -2.706 -3.177 C4 CHG 14 1YH C15 C15 C 0 1 N N N 9.389 -5.714 -42.223 1.852 -2.781 -2.403 C5 CHG 15 1YH C16 C16 C 0 1 N N N 8.917 -7.167 -42.199 1.999 -2.039 -1.073 C6 CHG 16 1YH N19 N19 N 0 1 N N N 9.031 -10.885 -40.099 0.239 1.120 0.329 N19 1Y4 17 1YH C20 C20 C 0 1 N N N 9.774 -10.937 -41.403 0.477 2.003 -0.831 C20 1Y4 18 1YH C21 C21 C 0 1 N N R 10.119 -12.376 -41.799 0.194 3.427 -0.363 C21 1Y4 19 1YH C23 C23 C 0 1 N N N 11.250 -12.446 -42.827 0.204 4.457 -1.498 C23 1Y4 20 1YH C24 C24 C 0 1 N N N 11.835 -13.859 -42.605 -0.911 5.461 -1.112 C24 1Y4 21 1YH C25 C25 C 0 1 N N N 11.186 -14.343 -41.284 -1.524 4.894 0.196 C25 1Y4 22 1YH N26 N26 N 0 1 N N N 10.724 -13.095 -40.650 -1.209 3.458 0.132 N26 1Y4 23 1YH C27 C27 C 0 1 N N N 9.792 -13.261 -39.536 -1.299 2.724 1.387 C27 1Y4 24 1YH C28 C28 C 0 1 N N S 9.352 -11.843 -39.021 -1.016 1.239 1.083 C28 1Y4 25 1YH C30 C30 C 0 1 N N N 10.373 -11.221 -38.101 -2.146 0.665 0.268 C30 1Y4 26 1YH O31 O31 O 0 1 N N N 11.070 -10.269 -38.448 -1.927 0.204 -0.832 O31 1Y4 27 1YH N32 N32 N 0 1 N N N 10.454 -11.716 -36.859 -3.400 0.665 0.761 N34 1XY 28 1YH C33 C33 C 0 1 N N R 11.394 -11.158 -35.894 -4.499 0.108 -0.032 C35 1XY 29 1YH C35 C35 C 0 1 N N N 12.726 -11.901 -36.108 -5.818 0.753 0.401 C37 1XY 30 1YH C36 C36 C 0 1 N N N 13.560 -11.878 -34.818 -6.971 -0.045 -0.220 C38 1XY 31 1YH O37 O37 O 0 1 N N N 12.801 -12.488 -33.766 -6.960 -1.361 0.336 O39 1XY 32 1YH C38 C38 C 0 1 Y N N 11.541 -12.019 -33.519 -5.779 -2.032 0.352 C40 1XY 33 1YH C39 C39 C 0 1 Y N N 10.987 -12.208 -32.245 -5.801 -3.410 0.543 C41 1XY 34 1YH C40 C40 C 0 1 Y N N 9.701 -11.745 -31.982 -4.622 -4.127 0.570 C42 1XY 35 1YH C41 C41 C 0 1 Y N N 8.972 -11.078 -32.969 -3.414 -3.475 0.407 C43 1XY 36 1YH C42 C42 C 0 1 Y N N 9.527 -10.903 -34.232 -3.388 -2.107 0.215 C44 1XY 37 1YH C43 C43 C 0 1 Y N N 10.816 -11.364 -34.506 -4.568 -1.383 0.185 C45 1XY 38 1YH H1 H1 H 0 1 N N N 2.237 -7.237 -41.465 7.359 0.345 1.658 H MAA 39 1YH H3 H3 H 0 1 N N N 2.890 -5.793 -43.235 9.139 -1.196 1.288 HM1 MAA 40 1YH H4 H4 H 0 1 N N N 3.611 -5.300 -41.665 8.106 -1.757 2.624 HM2 MAA 41 1YH H5 H5 H 0 1 N N N 4.600 -6.201 -42.864 7.931 -2.472 1.003 HM3 MAA 42 1YH H6 H6 H 0 1 N N N 4.310 -6.957 -40.134 5.714 -2.060 1.390 HA MAA 43 1YH H7 H7 H 0 1 N N N 4.050 -9.158 -39.044 4.504 -1.009 3.283 HB1 MAA 44 1YH H8 H8 H 0 1 N N N 2.468 -8.372 -39.374 6.235 -1.191 3.654 HB2 MAA 45 1YH H9 H9 H 0 1 N N N 3.040 -9.715 -40.421 5.587 0.401 3.192 HB3 MAA 46 1YH H14 H14 H 0 1 N N N 6.242 -8.110 -39.531 3.171 -1.172 1.488 HN CHG 47 1YH H15 H15 H 0 1 N N N 7.722 -9.295 -41.867 2.838 1.186 -0.202 HA CHG 48 1YH H16 H16 H 0 1 N N N 7.650 -6.786 -40.550 1.555 -0.113 -1.931 H1 CHG 49 1YH H17 H17 H 0 1 N N N 9.089 -7.567 -38.739 3.916 0.545 -2.310 H2 CHG 50 1YH H18 H18 H 0 1 N N N 10.330 -8.077 -39.934 4.460 -0.960 -1.530 H2A CHG 51 1YH H10 H10 H 0 1 N N N 10.975 -5.904 -39.118 2.726 -0.781 -4.035 H3 CHG 52 1YH H11 H11 H 0 1 N N N 9.317 -5.255 -39.353 4.458 -1.188 -3.999 H3A CHG 53 1YH H19 H19 H 0 1 N N N 11.391 -5.967 -41.463 3.065 -3.235 -4.124 H4 CHG 54 1YH H20 H20 H 0 1 N N N 10.654 -4.367 -41.113 3.964 -3.167 -2.589 H4A CHG 55 1YH H12 H12 H 0 1 N N N 9.805 -5.490 -43.217 1.059 -2.321 -2.990 H5 CHG 56 1YH H13 H13 H 0 1 N N N 8.529 -5.056 -42.029 1.603 -3.825 -2.210 H5A CHG 57 1YH H21 H21 H 0 1 N N N 8.096 -7.296 -42.920 2.793 -2.500 -0.485 H6 CHG 58 1YH H22 H22 H 0 1 N N N 9.753 -7.827 -42.473 1.061 -2.092 -0.521 H6A CHG 59 1YH H23 H23 H 0 1 N N N 10.706 -10.360 -41.306 1.513 1.917 -1.158 H23 1Y4 60 1YH H24 H24 H 0 1 N N N 9.147 -10.491 -42.189 -0.195 1.737 -1.647 H24 1Y4 61 1YH H25 H25 H 0 1 N N N 9.226 -12.899 -42.171 0.885 3.710 0.431 H25 1Y4 62 1YH H26 H26 H 0 1 N N N 12.006 -11.671 -42.636 1.170 4.960 -1.548 H26 1Y4 63 1YH H27 H27 H 0 1 N N N 10.862 -12.335 -43.850 -0.027 3.978 -2.449 H27 1Y4 64 1YH H28 H28 H 0 1 N N N 11.567 -14.526 -43.437 -0.486 6.449 -0.934 H28 1Y4 65 1YH H29 H29 H 0 1 N N N 12.930 -13.816 -42.508 -1.667 5.508 -1.896 H29 1Y4 66 1YH H30 H30 H 0 1 N N N 10.341 -15.018 -41.485 -1.057 5.351 1.068 H30 1Y4 67 1YH H31 H31 H 0 1 N N N 11.923 -14.857 -40.649 -2.603 5.050 0.212 H31 1Y4 68 1YH H33 H33 H 0 1 N N N 8.908 -13.821 -39.875 -0.562 3.106 2.093 H33 1Y4 69 1YH H34 H34 H 0 1 N N N 10.285 -13.812 -38.722 -2.301 2.829 1.805 H34 1Y4 70 1YH H35 H35 H 0 1 N N N 8.436 -11.997 -38.432 -0.929 0.686 2.019 H35 1Y4 71 1YH H36 H36 H 0 1 N N N 9.863 -12.477 -36.591 -3.576 1.034 1.641 H36 1XY 72 1YH H37 H37 H 0 1 N N N 11.542 -10.084 -36.078 -4.325 0.313 -1.088 H37 1XY 73 1YH H38 H38 H 0 1 N N N 12.519 -12.944 -36.388 -5.899 0.729 1.488 H38 1XY 74 1YH H39 H39 H 0 1 N N N 13.290 -11.410 -36.914 -5.854 1.784 0.052 H39 1XY 75 1YH H40 H40 H 0 1 N N N 14.494 -12.438 -34.972 -7.920 0.442 0.009 H40 1XY 76 1YH H41 H41 H 0 1 N N N 13.796 -10.838 -34.549 -6.839 -0.102 -1.301 H41 1XY 77 1YH H42 H42 H 0 1 N N N 11.554 -12.709 -31.474 -6.745 -3.920 0.671 H42 1XY 78 1YH H43 H43 H 0 1 N N N 9.264 -11.903 -31.007 -4.643 -5.196 0.719 H43 1XY 79 1YH H44 H44 H 0 1 N N N 7.983 -10.701 -32.753 -2.491 -4.035 0.429 H44 1XY 80 1YH H45 H45 H 0 1 N N N 8.958 -10.408 -35.005 -2.443 -1.600 0.087 H45 1XY 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1YH C23 C24 SING N N 1 1YH C23 C21 SING N N 2 1YH C24 C25 SING N N 3 1YH O7 C6 DOUB N N 4 1YH C1 N2 SING N N 5 1YH C15 C16 SING N N 6 1YH C15 C14 SING N N 7 1YH C16 C11 SING N N 8 1YH N2 C3 SING N N 9 1YH C21 C20 SING N N 10 1YH C21 N26 SING N N 11 1YH C20 N19 SING N N 12 1YH C6 C3 SING N N 13 1YH C6 N8 SING N N 14 1YH C25 N26 SING N N 15 1YH C14 C13 SING N N 16 1YH C9 C11 SING N N 17 1YH C9 N8 SING N N 18 1YH C9 C17 SING N N 19 1YH C11 C12 SING N N 20 1YH C3 C5 SING N N 21 1YH N26 C27 SING N N 22 1YH N19 C17 SING N N 23 1YH N19 C28 SING N N 24 1YH C17 O18 DOUB N N 25 1YH C13 C12 SING N N 26 1YH C27 C28 SING N N 27 1YH C28 C30 SING N N 28 1YH O31 C30 DOUB N N 29 1YH C30 N32 SING N N 30 1YH N32 C33 SING N N 31 1YH C35 C33 SING N N 32 1YH C35 C36 SING N N 33 1YH C33 C43 SING N N 34 1YH C36 O37 SING N N 35 1YH C43 C42 DOUB Y N 36 1YH C43 C38 SING Y N 37 1YH C42 C41 SING Y N 38 1YH O37 C38 SING N N 39 1YH C38 C39 DOUB Y N 40 1YH C41 C40 DOUB Y N 41 1YH C39 C40 SING Y N 42 1YH N2 H1 SING N N 43 1YH C1 H3 SING N N 44 1YH C1 H4 SING N N 45 1YH C1 H5 SING N N 46 1YH C3 H6 SING N N 47 1YH C5 H7 SING N N 48 1YH C5 H8 SING N N 49 1YH C5 H9 SING N N 50 1YH C13 H10 SING N N 51 1YH C13 H11 SING N N 52 1YH C15 H12 SING N N 53 1YH C15 H13 SING N N 54 1YH N8 H14 SING N N 55 1YH C9 H15 SING N N 56 1YH C11 H16 SING N N 57 1YH C12 H17 SING N N 58 1YH C12 H18 SING N N 59 1YH C14 H19 SING N N 60 1YH C14 H20 SING N N 61 1YH C16 H21 SING N N 62 1YH C16 H22 SING N N 63 1YH C20 H23 SING N N 64 1YH C20 H24 SING N N 65 1YH C21 H25 SING N N 66 1YH C23 H26 SING N N 67 1YH C23 H27 SING N N 68 1YH C24 H28 SING N N 69 1YH C24 H29 SING N N 70 1YH C25 H30 SING N N 71 1YH C25 H31 SING N N 72 1YH C27 H33 SING N N 73 1YH C27 H34 SING N N 74 1YH C28 H35 SING N N 75 1YH N32 H36 SING N N 76 1YH C33 H37 SING N N 77 1YH C35 H38 SING N N 78 1YH C35 H39 SING N N 79 1YH C36 H40 SING N N 80 1YH C36 H41 SING N N 81 1YH C39 H42 SING N N 82 1YH C40 H43 SING N N 83 1YH C41 H44 SING N N 84 1YH C42 H45 SING N N 85 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1YH SMILES ACDLabs 12.01 "O=C(NC(C(=O)N2CC1N(CCC1)CC2C(=O)NC3c4c(OCC3)cccc4)C5CCCCC5)C(NC)C" 1YH InChI InChI 1.03 "InChI=1S/C29H43N5O4/c1-19(30-2)27(35)32-26(20-9-4-3-5-10-20)29(37)34-17-21-11-8-15-33(21)18-24(34)28(36)31-23-14-16-38-25-13-7-6-12-22(23)25/h6-7,12-13,19-21,23-24,26,30H,3-5,8-11,14-18H2,1-2H3,(H,31,36)(H,32,35)/t19-,21+,23+,24-,26-/m0/s1" 1YH InChIKey InChI 1.03 GIAUJOMDUOPYLU-XFCBJTKFSA-N 1YH SMILES_CANONICAL CACTVS 3.385 "CN[C@@H](C)C(=O)N[C@@H](C1CCCCC1)C(=O)N2C[C@H]3CCCN3C[C@H]2C(=O)N[C@@H]4CCOc5ccccc45" 1YH SMILES CACTVS 3.385 "CN[CH](C)C(=O)N[CH](C1CCCCC1)C(=O)N2C[CH]3CCCN3C[CH]2C(=O)N[CH]4CCOc5ccccc45" 1YH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@@H](C(=O)N[C@@H](C1CCCCC1)C(=O)N2C[C@H]3CCCN3C[C@H]2C(=O)N[C@@H]4CCOc5c4cccc5)NC" 1YH SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(=O)NC(C1CCCCC1)C(=O)N2CC3CCCN3CC2C(=O)NC4CCOc5c4cccc5)NC" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1YH "SYSTEMATIC NAME" ACDLabs 12.01 "(3S,8aR)-2-{(2S)-2-cyclohexyl-2-[(N-methyl-L-alanyl)amino]acetyl}-N-[(4R)-3,4-dihydro-2H-chromen-4-yl]octahydropyrrolo[1,2-a]pyrazine-3-carboxamide" 1YH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3S,8aR)-2-[(2S)-2-cyclohexyl-2-[[(2S)-2-(methylamino)propanoyl]amino]ethanoyl]-N-[(4R)-3,4-dihydro-2H-chromen-4-yl]-3,4,6,7,8,8a-hexahydro-1H-pyrrolo[1,2-a]pyrazine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1YH "Create component" 2013-08-02 RCSB 1YH "Other modification" 2013-08-05 RCSB 1YH "Modify component comp_id" 2013-08-22 RCSB 1YH "Initial release" 2013-08-28 RCSB 1YH "Modify internal type" 2022-12-13 RCSB #