data_1YJ # _chem_comp.id 1YJ _chem_comp.name "N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N7 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-08-05 _chem_comp.pdbx_modified_date 2013-08-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 1YJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4LY3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 1YJ N3 N3 N 0 1 N N N -30.162 -2.123 20.441 5.775 -2.538 -0.203 N3 1YJ 1 1YJ C2 C2 C 0 1 N N N -31.312 -1.680 19.910 6.251 -1.979 -1.349 C2 1YJ 2 1YJ N1 N1 N 0 1 N N N -31.362 -0.955 18.764 6.257 -0.676 -1.531 N1 1YJ 3 1YJ C8A C8A C 0 1 N N N -30.193 -0.632 18.173 5.791 0.153 -0.589 C8A 1YJ 4 1YJ C4A C4A C 0 1 N N N -28.967 -1.009 18.736 5.297 -0.367 0.599 C4A 1YJ 5 1YJ C4 C4 C 0 1 N N N -28.974 -1.758 19.914 5.289 -1.754 0.783 C4 1YJ 6 1YJ N8 N8 N 0 1 N N N -30.267 0.104 17.061 5.800 1.524 -0.791 N8 1YJ 7 1YJ C7 C7 C 0 1 N N N -28.992 0.511 16.433 5.656 2.418 0.367 C7 1YJ 8 1YJ C6 C6 C 0 1 N N R -27.773 0.571 17.376 4.509 1.893 1.243 C6 1YJ 9 1YJ N5 N5 N 0 1 N N N -27.775 -0.624 18.194 4.808 0.498 1.602 N5 1YJ 10 1YJ C9 C9 C 0 1 N N N -27.612 1.720 18.393 3.195 1.950 0.463 C9 1YJ 11 1YJ N10 N10 N 0 1 N N N -28.044 3.018 17.931 2.127 1.338 1.259 N10 1YJ 12 1YJ "C4'" "C4'" C 0 1 Y N N -28.355 4.071 18.723 0.834 1.273 0.754 "C4'" 1YJ 13 1YJ "C3'" "C3'" C 0 1 Y N N -29.242 4.997 18.159 0.555 1.785 -0.511 "C3'" 1YJ 14 1YJ "C2'" "C2'" C 0 1 Y N N -29.700 6.101 18.873 -0.725 1.722 -1.013 "C2'" 1YJ 15 1YJ "C1'" "C1'" C 0 1 Y N N -29.302 6.294 20.201 -1.745 1.144 -0.253 "C1'" 1YJ 16 1YJ "C6'" "C6'" C 0 1 Y N N -28.427 5.362 20.774 -1.462 0.632 1.017 "C6'" 1YJ 17 1YJ "C5'" "C5'" C 0 1 Y N N -27.974 4.250 20.059 -0.180 0.692 1.511 "C5'" 1YJ 18 1YJ C11 C11 C 0 1 N N N -29.894 7.464 20.917 -3.118 1.076 -0.788 C11 1YJ 19 1YJ N N N 0 1 N N N -29.697 7.679 22.220 -4.101 0.518 -0.054 N 1YJ 20 1YJ CA CA C 0 1 N N S -30.279 8.763 23.001 -5.464 0.451 -0.586 CA 1YJ 21 1YJ C C C 0 1 N N N -29.326 9.729 23.657 -6.181 1.745 -0.298 C 1YJ 22 1YJ OX2 OX2 O 0 1 N N N -28.149 9.387 23.940 -7.452 1.911 -0.696 OX2 1YJ 23 1YJ OX1 OX1 O 0 1 N N N -29.797 10.865 23.912 -5.611 2.633 0.291 OX1 1YJ 24 1YJ CB CB C 0 1 N N N -30.969 8.057 24.169 -6.214 -0.706 0.078 CB 1YJ 25 1YJ CG CG C 0 1 N N N -32.249 7.382 23.704 -5.559 -2.031 -0.316 CG 1YJ 26 1YJ CD CD C 0 1 N N N -32.991 6.672 24.822 -6.298 -3.171 0.338 CD 1YJ 27 1YJ OE1 OE1 O 0 1 N N N -33.938 5.944 24.427 -7.250 -2.945 1.047 OE1 1YJ 28 1YJ OE2 OE2 O 0 1 N N N -32.658 6.826 26.032 -5.897 -4.435 0.134 OE2 1YJ 29 1YJ O11 O11 O 0 1 N N N -30.648 8.161 20.249 -3.363 1.523 -1.892 O11 1YJ 30 1YJ O4 O4 O 0 1 N N N -27.869 -2.239 20.547 4.859 -2.244 1.817 O4 1YJ 31 1YJ N2 N2 N 0 1 N N N -32.457 -2.088 20.499 6.738 -2.795 -2.339 N2 1YJ 32 1YJ H3 H3 H 0 1 N N N -28.765 -0.208 15.632 6.582 2.427 0.942 H3 1YJ 33 1YJ H4 H4 H 0 1 N N N -29.133 1.512 15.999 5.425 3.427 0.026 H4 1YJ 34 1YJ H5 H5 H 0 1 N N N -26.871 0.562 16.747 4.429 2.498 2.146 H5 1YJ 35 1YJ H6 H6 H 0 1 N N N -27.446 -1.378 17.625 4.678 0.181 2.510 H6 1YJ 36 1YJ H8 H8 H 0 1 N N N -28.198 1.466 19.289 2.941 2.989 0.253 H8 1YJ 37 1YJ H9 H9 H 0 1 N N N -29.579 4.851 17.144 1.344 2.232 -1.097 H9 1YJ 38 1YJ H10 H10 H 0 1 N N N -30.364 6.810 18.401 -0.940 2.120 -1.994 H10 1YJ 39 1YJ H11 H11 H 0 1 N N N -28.095 5.506 21.792 -2.249 0.185 1.607 H11 1YJ 40 1YJ H12 H12 H 0 1 N N N -27.329 3.528 20.537 0.041 0.292 2.490 H12 1YJ 41 1YJ H13 H13 H 0 1 N N N -29.098 7.040 22.702 -3.906 0.162 0.827 H13 1YJ 42 1YJ H14 H14 H 0 1 N N N -31.024 9.314 22.408 -5.426 0.288 -1.663 H14 1YJ 43 1YJ H15 H15 H 0 1 N N N -27.701 10.111 24.362 -7.870 2.758 -0.489 H15 1YJ 44 1YJ H16 H16 H 0 1 N N N -30.290 7.298 24.585 -6.175 -0.590 1.161 H16 1YJ 45 1YJ H17 H17 H 0 1 N N N -31.212 8.797 24.946 -7.253 -0.702 -0.251 H17 1YJ 46 1YJ H18 H18 H 0 1 N N N -32.912 8.148 23.275 -5.598 -2.148 -1.399 H18 1YJ 47 1YJ H19 H19 H 0 1 N N N -31.993 6.643 22.930 -4.520 -2.035 0.013 H19 1YJ 48 1YJ H20 H20 H 0 1 N N N -33.231 6.310 26.587 -6.402 -5.132 0.575 H20 1YJ 49 1YJ H21 H21 H 0 1 N N N -33.340 -1.856 20.091 6.739 -3.757 -2.218 H21 1YJ 50 1YJ H22 H22 H 0 1 N N N -32.422 -2.622 21.344 7.080 -2.409 -3.161 H22 1YJ 51 1YJ H23 H23 H 0 1 N N N -30.185 -2.730 21.235 5.781 -3.502 -0.096 H23 1YJ 52 1YJ H1 H1 H 0 1 N N N -30.771 0.938 17.285 5.901 1.889 -1.684 H1 1YJ 53 1YJ H2 H2 H 0 1 N N N -26.547 1.791 18.660 3.305 1.406 -0.475 H2 1YJ 54 1YJ H7 H7 H 0 1 N N N -27.311 3.344 17.334 2.323 0.979 2.138 H7 1YJ 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1YJ C7 N8 SING N N 1 1YJ C7 C6 SING N N 2 1YJ N8 C8A SING N N 3 1YJ C6 N5 SING N N 4 1YJ C6 C9 SING N N 5 1YJ N10 C9 SING N N 6 1YJ N10 "C4'" SING N N 7 1YJ "C3'" "C4'" DOUB Y N 8 1YJ "C3'" "C2'" SING Y N 9 1YJ C8A C4A DOUB N N 10 1YJ C8A N1 SING N N 11 1YJ N5 C4A SING N N 12 1YJ "C4'" "C5'" SING Y N 13 1YJ C4A C4 SING N N 14 1YJ N1 C2 DOUB N N 15 1YJ "C2'" "C1'" DOUB Y N 16 1YJ C2 N3 SING N N 17 1YJ C2 N2 SING N N 18 1YJ C4 N3 SING N N 19 1YJ C4 O4 DOUB N N 20 1YJ "C5'" "C6'" DOUB Y N 21 1YJ "C1'" "C6'" SING Y N 22 1YJ "C1'" C11 SING N N 23 1YJ O11 C11 DOUB N N 24 1YJ C11 N SING N N 25 1YJ N CA SING N N 26 1YJ CA C SING N N 27 1YJ CA CB SING N N 28 1YJ C OX1 DOUB N N 29 1YJ C OX2 SING N N 30 1YJ CG CB SING N N 31 1YJ CG CD SING N N 32 1YJ OE1 CD DOUB N N 33 1YJ CD OE2 SING N N 34 1YJ C7 H3 SING N N 35 1YJ C7 H4 SING N N 36 1YJ C6 H5 SING N N 37 1YJ N5 H6 SING N N 38 1YJ C9 H8 SING N N 39 1YJ "C3'" H9 SING N N 40 1YJ "C2'" H10 SING N N 41 1YJ "C6'" H11 SING N N 42 1YJ "C5'" H12 SING N N 43 1YJ N H13 SING N N 44 1YJ CA H14 SING N N 45 1YJ OX2 H15 SING N N 46 1YJ CB H16 SING N N 47 1YJ CB H17 SING N N 48 1YJ CG H18 SING N N 49 1YJ CG H19 SING N N 50 1YJ OE2 H20 SING N N 51 1YJ N2 H21 SING N N 52 1YJ N2 H22 SING N N 53 1YJ N3 H23 SING N N 54 1YJ N8 H1 SING N N 55 1YJ C9 H2 SING N N 56 1YJ N10 H7 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 1YJ SMILES ACDLabs 12.01 "O=C(O)C(NC(=O)c1ccc(cc1)NCC3NC2=C(N=C(N)NC2=O)NC3)CCC(=O)O" 1YJ InChI InChI 1.03 "InChI=1S/C19H23N7O6/c20-19-25-15-14(17(30)26-19)23-11(8-22-15)7-21-10-3-1-9(2-4-10)16(29)24-12(18(31)32)5-6-13(27)28/h1-4,11-12,21,23H,5-8H2,(H,24,29)(H,27,28)(H,31,32)(H4,20,22,25,26,30)/t11-,12+/m1/s1" 1YJ InChIKey InChI 1.03 MSTNYGQPCMXVAQ-NEPJUHHUSA-N 1YJ SMILES_CANONICAL CACTVS 3.385 "NC1=NC2=C(N[C@H](CNc3ccc(cc3)C(=O)N[C@@H](CCC(O)=O)C(O)=O)CN2)C(=O)N1" 1YJ SMILES CACTVS 3.385 "NC1=NC2=C(N[CH](CNc3ccc(cc3)C(=O)N[CH](CCC(O)=O)C(O)=O)CN2)C(=O)N1" 1YJ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)N[C@@H](CCC(=O)O)C(=O)O)NC[C@@H]2CNC3=C(N2)C(=O)NC(=N3)N" 1YJ SMILES "OpenEye OEToolkits" 1.7.6 "c1cc(ccc1C(=O)NC(CCC(=O)O)C(=O)O)NCC2CNC3=C(N2)C(=O)NC(=N3)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 1YJ "SYSTEMATIC NAME" ACDLabs 12.01 "N-[4-({[(6R)-2-amino-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid" 1YJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S)-2-[[4-[[(6R)-2-azanyl-4-oxidanylidene-5,6,7,8-tetrahydro-3H-pteridin-6-yl]methylamino]phenyl]carbonylamino]pentanedioic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 1YJ "Create component" 2013-08-05 RCSB 1YJ "Initial release" 2013-08-14 RCSB #