data_1YT
#
_chem_comp.id 1YT
_chem_comp.name "(1R,3S,4S,5R)-3-(4-amino-3-fluoro-5-{[(2R)-1,1,1-trifluoro-3-methoxypropan-2-yl]oxy}benzyl)-5-[(3-tert-butylbenzyl)amino]tetrahydro-2H-thiopyran-4-ol 1-oxide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H36 F4 N2 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2013-08-07
_chem_comp.pdbx_modified_date 2013-08-23
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 560.644
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1YT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4LXK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1YT F1 F1 F 0 1 N N N 4.238 -40.906 45.727 -4.592 2.378 -1.996 F1 1YT 1
1YT C2 C2 C 0 1 N N N 3.803 -39.872 46.495 -3.578 2.255 -1.040 C2 1YT 2
1YT F3 F3 F 0 1 N N N 4.101 -38.705 45.861 -2.852 1.084 -1.279 F3 1YT 3
1YT F4 F4 F 0 1 N N N 2.465 -39.987 46.644 -2.723 3.359 -1.122 F4 1YT 4
1YT C5 C5 C 0 1 N N R 4.453 -39.953 47.899 -4.199 2.194 0.357 C5 1YT 5
1YT O7 O7 O 0 1 N N N 4.024 -41.182 48.529 -5.073 1.066 0.441 O7 1YT 6
1YT C8 C8 C 0 1 Y N N 4.974 -42.065 49.034 -4.510 -0.128 0.767 C8 1YT 7
1YT C9 C9 C 0 1 Y N N 4.808 -42.565 50.348 -5.280 -1.288 0.761 C9 1YT 8
1YT C10 C10 C 0 1 Y N N 5.771 -43.457 50.879 -4.699 -2.504 1.095 C10 1YT 9
1YT C11 C11 C 0 1 Y N N 6.890 -43.849 50.106 -3.359 -2.560 1.434 C11 1YT 10
1YT C13 C13 C 0 1 Y N N 7.054 -43.343 48.787 -2.596 -1.407 1.440 C13 1YT 11
1YT C14 C14 C 0 1 Y N N 6.091 -42.456 48.258 -3.166 -0.194 1.102 C14 1YT 12
1YT C16 C16 C 0 1 N N N 8.268 -43.722 47.923 -1.136 -1.474 1.810 C16 1YT 13
1YT C19 C19 C 0 1 N N S 9.582 -43.030 48.438 -0.301 -1.715 0.551 C19 1YT 14
1YT C21 C21 C 0 1 N N S 10.858 -43.307 47.582 1.181 -1.646 0.905 C21 1YT 15
1YT C23 C23 C 0 1 N N R 12.155 -42.765 48.266 2.037 -1.614 -0.357 C23 1YT 16
1YT C25 C25 C 0 1 N N N 12.118 -41.240 48.586 1.998 -2.980 -1.050 C25 1YT 17
1YT S28 S28 S 0 1 N N R 10.719 -40.784 49.607 0.292 -3.324 -1.571 S28 1YT 18
1YT C29 C29 C 0 1 N N N 9.400 -41.481 48.615 -0.637 -3.092 -0.026 C29 1YT 19
1YT O32 O32 O 0 1 N N N 10.736 -41.601 50.876 -0.119 -2.351 -2.521 O32 1YT 20
1YT N33 N33 N 0 1 N N N 13.364 -43.028 47.431 3.424 -1.289 0.002 N33 1YT 21
1YT C35 C35 C 0 1 N N N 14.752 -42.876 47.962 4.132 -0.678 -1.131 C35 1YT 22
1YT C38 C38 C 0 1 Y N N 14.912 -43.679 49.268 5.548 -0.359 -0.726 C38 1YT 23
1YT C39 C39 C 0 1 Y N N 14.860 -45.091 49.235 5.847 0.869 -0.168 C39 1YT 24
1YT C41 C41 C 0 1 Y N N 14.996 -45.897 50.403 7.146 1.161 0.204 C41 1YT 25
1YT C42 C42 C 0 1 Y N N 15.185 -45.190 51.631 8.146 0.225 0.018 C42 1YT 26
1YT C44 C44 C 0 1 Y N N 15.243 -43.776 51.691 7.846 -1.004 -0.539 C44 1YT 27
1YT C46 C46 C 0 1 Y N N 15.103 -43.014 50.506 6.547 -1.298 -0.907 C46 1YT 28
1YT C48 C48 C 0 1 N N N 14.926 -47.465 50.310 7.473 2.501 0.811 C48 1YT 29
1YT C49 C49 C 0 1 N N N 15.867 -47.965 49.172 7.113 3.611 -0.178 C49 1YT 30
1YT C53 C53 C 0 1 N N N 15.339 -48.230 51.619 6.669 2.687 2.100 C53 1YT 31
1YT C57 C57 C 0 1 N N N 13.473 -47.945 49.981 8.968 2.567 1.129 C57 1YT 32
1YT O61 O61 O 0 1 N N N 11.074 -44.712 47.360 1.428 -0.465 1.670 O61 1YT 33
1YT F63 F63 F 0 1 N N N 5.622 -43.923 52.114 -5.443 -3.632 1.091 F63 1YT 34
1YT N64 N64 N 0 1 N N N 3.736 -42.189 51.086 -6.637 -1.227 0.418 N64 1YT 35
1YT C67 C67 C 0 1 N N N 4.120 -38.706 48.768 -4.994 3.475 0.619 C67 1YT 36
1YT O70 O70 O 0 1 N N N 4.737 -38.859 50.059 -5.953 3.662 -0.424 O70 1YT 37
1YT C71 C71 C 0 1 N N N 4.641 -37.683 50.887 -6.753 4.837 -0.274 C71 1YT 38
1YT H1 H1 H 0 1 N N N 5.544 -39.982 47.762 -3.409 2.098 1.102 H1 1YT 39
1YT H2 H2 H 0 1 N N N 7.619 -44.532 50.517 -2.908 -3.507 1.693 H2 1YT 40
1YT H3 H3 H 0 1 N N N 6.208 -42.074 47.255 -2.567 0.704 1.108 H3 1YT 41
1YT H4 H4 H 0 1 N N N 8.081 -43.406 46.886 -0.835 -0.533 2.271 H4 1YT 42
1YT H5 H5 H 0 1 N N N 8.403 -44.813 47.955 -0.977 -2.291 2.513 H5 1YT 43
1YT H6 H6 H 0 1 N N N 9.779 -43.439 49.440 -0.531 -0.947 -0.188 H6 1YT 44
1YT H7 H7 H 0 1 N N N 10.741 -42.793 46.617 1.449 -2.520 1.499 H7 1YT 45
1YT H8 H8 H 0 1 N N N 12.272 -43.300 49.220 1.653 -0.853 -1.036 H8 1YT 46
1YT H9 H9 H 0 1 N N N 13.043 -40.969 49.115 2.651 -2.965 -1.922 H9 1YT 47
1YT H10 H10 H 0 1 N N N 12.060 -40.683 47.639 2.330 -3.751 -0.355 H10 1YT 48
1YT H11 H11 H 0 1 N N N 9.405 -41.003 47.624 -0.356 -3.866 0.688 H11 1YT 49
1YT H12 H12 H 0 1 N N N 8.437 -41.287 49.110 -1.706 -3.152 -0.230 H12 1YT 50
1YT H14 H14 H 0 1 N N N 13.298 -42.414 46.645 3.913 -2.107 0.335 H14 1YT 51
1YT H16 H16 H 0 1 N N N 15.469 -43.248 47.216 4.142 -1.373 -1.971 H16 1YT 52
1YT H17 H17 H 0 1 N N N 14.950 -41.813 48.162 3.623 0.240 -1.425 H17 1YT 53
1YT H18 H18 H 0 1 N N N 14.711 -45.580 48.284 5.066 1.601 -0.023 H18 1YT 54
1YT H19 H19 H 0 1 N N N 15.287 -45.754 52.546 9.161 0.454 0.308 H19 1YT 55
1YT H20 H20 H 0 1 N N N 15.394 -43.280 52.639 8.627 -1.736 -0.685 H20 1YT 56
1YT H21 H21 H 0 1 N N N 15.141 -41.935 50.544 6.312 -2.260 -1.339 H21 1YT 57
1YT H22 H22 H 0 1 N N N 16.898 -47.641 49.379 6.048 3.565 -0.405 H22 1YT 58
1YT H23 H23 H 0 1 N N N 15.831 -49.063 49.123 7.349 4.581 0.261 H23 1YT 59
1YT H24 H24 H 0 1 N N N 15.536 -47.544 48.211 7.685 3.479 -1.096 H24 1YT 60
1YT H25 H25 H 0 1 N N N 14.697 -47.906 52.452 6.925 1.896 2.805 H25 1YT 61
1YT H26 H26 H 0 1 N N N 15.220 -49.312 51.464 6.905 3.656 2.539 H26 1YT 62
1YT H27 H27 H 0 1 N N N 16.389 -48.007 51.858 5.604 2.640 1.873 H27 1YT 63
1YT H28 H28 H 0 1 N N N 12.786 -47.605 50.770 9.541 2.435 0.211 H28 1YT 64
1YT H29 H29 H 0 1 N N N 13.158 -47.524 49.015 9.204 3.536 1.568 H29 1YT 65
1YT H30 H30 H 0 1 N N N 13.453 -49.043 49.926 9.224 1.776 1.834 H30 1YT 66
1YT H31 H31 H 0 1 N N N 10.308 -45.089 46.943 2.348 -0.361 1.949 H31 1YT 67
1YT H32 H32 H 0 1 N N N 3.775 -42.632 51.982 -7.042 -0.377 0.185 H32 1YT 68
1YT H33 H33 H 0 1 N N N 3.745 -41.196 51.205 -7.173 -2.036 0.414 H33 1YT 69
1YT H34 H34 H 0 1 N N N 4.508 -37.801 48.278 -5.508 3.394 1.576 H34 1YT 70
1YT H35 H35 H 0 1 N N N 3.030 -38.620 48.888 -4.313 4.326 0.643 H35 1YT 71
1YT H36 H36 H 0 1 N N N 5.132 -37.873 51.853 -7.304 4.784 0.665 H36 1YT 72
1YT H37 H37 H 0 1 N N N 5.136 -36.839 50.384 -6.109 5.716 -0.269 H37 1YT 73
1YT H38 H38 H 0 1 N N N 3.582 -37.439 51.056 -7.455 4.906 -1.104 H38 1YT 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1YT F1 C2 SING N N 1
1YT F3 C2 SING N N 2
1YT C2 F4 SING N N 3
1YT C2 C5 SING N N 4
1YT O61 C21 SING N N 5
1YT N33 C35 SING N N 6
1YT N33 C23 SING N N 7
1YT C21 C23 SING N N 8
1YT C21 C19 SING N N 9
1YT C5 O7 SING N N 10
1YT C5 C67 SING N N 11
1YT C16 C19 SING N N 12
1YT C16 C13 SING N N 13
1YT C35 C38 SING N N 14
1YT C14 C13 DOUB Y N 15
1YT C14 C8 SING Y N 16
1YT C23 C25 SING N N 17
1YT C19 C29 SING N N 18
1YT O7 C8 SING N N 19
1YT C25 S28 SING N N 20
1YT C29 S28 SING N N 21
1YT C67 O70 SING N N 22
1YT C13 C11 SING Y N 23
1YT C8 C9 DOUB Y N 24
1YT C49 C48 SING N N 25
1YT C39 C38 DOUB Y N 26
1YT C39 C41 SING Y N 27
1YT C38 C46 SING Y N 28
1YT S28 O32 DOUB N N 29
1YT C57 C48 SING N N 30
1YT O70 C71 SING N N 31
1YT C11 C10 DOUB Y N 32
1YT C48 C41 SING N N 33
1YT C48 C53 SING N N 34
1YT C9 C10 SING Y N 35
1YT C9 N64 SING N N 36
1YT C41 C42 DOUB Y N 37
1YT C46 C44 DOUB Y N 38
1YT C10 F63 SING N N 39
1YT C42 C44 SING Y N 40
1YT C5 H1 SING N N 41
1YT C11 H2 SING N N 42
1YT C14 H3 SING N N 43
1YT C16 H4 SING N N 44
1YT C16 H5 SING N N 45
1YT C19 H6 SING N N 46
1YT C21 H7 SING N N 47
1YT C23 H8 SING N N 48
1YT C25 H9 SING N N 49
1YT C25 H10 SING N N 50
1YT C29 H11 SING N N 51
1YT C29 H12 SING N N 52
1YT N33 H14 SING N N 53
1YT C35 H16 SING N N 54
1YT C35 H17 SING N N 55
1YT C39 H18 SING N N 56
1YT C42 H19 SING N N 57
1YT C44 H20 SING N N 58
1YT C46 H21 SING N N 59
1YT C49 H22 SING N N 60
1YT C49 H23 SING N N 61
1YT C49 H24 SING N N 62
1YT C53 H25 SING N N 63
1YT C53 H26 SING N N 64
1YT C53 H27 SING N N 65
1YT C57 H28 SING N N 66
1YT C57 H29 SING N N 67
1YT C57 H30 SING N N 68
1YT O61 H31 SING N N 69
1YT N64 H32 SING N N 70
1YT N64 H33 SING N N 71
1YT C67 H34 SING N N 72
1YT C67 H35 SING N N 73
1YT C71 H36 SING N N 74
1YT C71 H37 SING N N 75
1YT C71 H38 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1YT SMILES ACDLabs 12.01 "O=S2CC(C(O)C(NCc1cccc(c1)C(C)(C)C)C2)Cc3cc(F)c(N)c(OC(C(F)(F)F)COC)c3"
1YT InChI InChI 1.03
"InChI=1S/C27H36F4N2O4S/c1-26(2,3)19-7-5-6-16(9-19)12-33-21-15-38(35)14-18(25(21)34)8-17-10-20(28)24(32)22(11-17)37-23(13-36-4)27(29,30)31/h5-7,9-11,18,21,23,25,33-34H,8,12-15,32H2,1-4H3/t18-,21+,23-,25+,38-/m1/s1"
1YT InChIKey InChI 1.03 FIUDDEQHPBHZBI-XPLIUGCLSA-N
1YT SMILES_CANONICAL CACTVS 3.385 "COC[C@@H](Oc1cc(C[C@@H]2C[S@@](=O)C[C@H](NCc3cccc(c3)C(C)(C)C)[C@H]2O)cc(F)c1N)C(F)(F)F"
1YT SMILES CACTVS 3.385 "COC[CH](Oc1cc(C[CH]2C[S](=O)C[CH](NCc3cccc(c3)C(C)(C)C)[CH]2O)cc(F)c1N)C(F)(F)F"
1YT SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C)c1cccc(c1)CN[C@H]2C[S@](=O)C[C@H]([C@@H]2O)Cc3cc(c(c(c3)F)N)O[C@H](COC)C(F)(F)F"
1YT SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)(C)c1cccc(c1)CNC2CS(=O)CC(C2O)Cc3cc(c(c(c3)F)N)OC(COC)C(F)(F)F"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1YT "SYSTEMATIC NAME" ACDLabs 12.01 "(1R,3S,4S,5R)-3-(4-amino-3-fluoro-5-{[(2R)-1,1,1-trifluoro-3-methoxypropan-2-yl]oxy}benzyl)-5-[(3-tert-butylbenzyl)amino]tetrahydro-2H-thiopyran-4-ol 1-oxide"
1YT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(1R,3S,4S,5R)-3-[[4-azanyl-3-fluoranyl-5-[(2R)-1,1,1-tris(fluoranyl)-3-methoxy-propan-2-yl]oxy-phenyl]methyl]-5-[(3-tert-butylphenyl)methylamino]-1-oxidanylidene-thian-4-ol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1YT "Create component" 2013-08-07 RCSB
1YT "Initial release" 2013-08-28 RCSB
#