data_1ZV
#
_chem_comp.id 1ZV
_chem_comp.name "amino({3-[(3R,5R,14S,16S,21aR)-5,14-dihydroxy-1,4,17-trioxo-16-(2-phenylethyl)icosahydro-1H-pyrrolo[1,2-d][1,4,7,11]tetraazacyclononadecin-3-yl]propyl}amino)methaniminium"
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H50 N7 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2008-08-27
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 588.762
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 1ZV
_chem_comp.pdbx_model_coordinates_details "not provided"
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1ay6
_chem_comp.pdbx_subcomponent_list "HMF PRO 00W 8AC"
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
1ZV N N1 N 0 1 N N N N N N 17.319 -16.948 23.000 2.807 1.720 0.287 N HMF 1
1ZV CA C1 C 0 1 N N R N N N 18.111 -15.809 23.640 2.769 0.257 0.410 CA HMF 2
1ZV C C2 C 0 1 N N N N N N 17.746 -14.582 22.850 1.768 -0.303 -0.567 C HMF 3
1ZV O O1 O 0 1 N N N N N N 16.602 -14.156 23.027 0.924 0.419 -1.054 O HMF 4
1ZV CB C3 C 0 1 N N N N N N 17.642 -16.156 25.068 4.154 -0.317 0.107 CB HMF 5
1ZV CG C4 C 0 1 N N N N N N 18.682 -16.036 26.102 5.183 0.307 1.052 CG HMF 6
1ZV C1 C5 C 0 1 Y N N N N N 20.119 -15.714 25.812 6.547 -0.258 0.753 C1 HMF 7
1ZV C2 C6 C 0 1 Y N N N N N 21.020 -16.574 25.229 7.365 0.362 -0.173 C2 HMF 8
1ZV C6 C7 C 0 1 Y N N N N N 20.646 -14.479 26.143 6.984 -1.394 1.409 C6 HMF 9
1ZV C3 C8 C 0 1 Y N N N N N 22.347 -16.195 25.022 8.616 -0.156 -0.447 C3 HMF 10
1ZV C5 C9 C 0 1 Y N N N N N 21.969 -14.096 25.984 8.236 -1.913 1.135 C5 HMF 11
1ZV C4 C10 C 0 1 Y N N N N N 22.813 -14.999 25.389 9.051 -1.295 0.205 C4 HMF 12
1ZV N1 N2 N 0 1 N N N N N N 18.583 -14.068 22.000 1.812 -1.611 -0.899 N PRO 13
1ZV CA1 C11 C 0 1 N N S N N N 18.220 -12.823 21.251 0.907 -2.276 -1.837 CA PRO 14
1ZV C7 C12 C 0 1 N N N N N N 16.877 -12.883 20.550 -0.522 -1.957 -1.476 C PRO 15
1ZV O1 O3 O 0 1 N N N N N N 16.539 -14.000 20.102 -0.941 -2.174 -0.358 O PRO 16
1ZV CB1 C13 C 0 1 N N N N N N 19.382 -12.566 20.336 1.142 -3.785 -1.736 CB PRO 17
1ZV CG1 C14 C 0 1 N N N N N N 20.395 -13.636 20.575 2.209 -3.985 -0.649 CG PRO 18
1ZV CD C15 C 0 1 N N N N N N 19.891 -14.587 21.640 2.773 -2.583 -0.382 CD PRO 19
1ZV N2 N3 N 0 1 N N N N N N 16.070 -11.809 20.459 -1.336 -1.419 -2.434 N2 00W 20
1ZV CA2 C16 C 0 1 N N S N N N 14.803 -11.692 19.760 -2.725 -1.149 -1.992 CA2 00W 21
1ZV C8 C17 C 0 1 N N N N N N 14.752 -10.937 18.393 -2.935 0.343 -1.953 C8 00W 22
1ZV O2 O5 O 0 1 N N N N N N 13.641 -11.000 17.586 -2.047 1.087 -2.292 O2 00W 23
1ZV CB2 C18 C 0 1 N N N N N N 13.730 -11.074 20.639 -2.944 -1.736 -0.596 CB2 00W 24
1ZV CG2 C19 C 0 1 N N N N N N 13.081 -11.986 21.608 -4.437 -1.718 -0.264 CG2 00W 25
1ZV CD1 C20 C 0 1 N N N N N N 12.155 -11.285 22.535 -4.646 -2.197 1.174 CD1 00W 26
1ZV NE N4 N 0 1 N N N N N N 11.503 -12.307 23.298 -6.075 -2.180 1.492 NE 00W 27
1ZV CZ C21 C 0 1 N N N N N N 10.723 -12.181 24.301 -6.505 -2.571 2.731 CZ 00W 28
1ZV NH1 N5 N 0 1 N N N N N N 10.496 -10.886 24.684 -5.623 -2.967 3.647 NH1 00W 29
1ZV NH2 N6 N 1 1 N N N N N N 10.080 -13.174 24.927 -7.805 -2.555 3.020 NH2 00W 30
1ZV C9 C22 C 0 1 N N R N N N 15.993 -11.521 17.538 -4.254 0.905 -1.489 C9 00W 31
1ZV O3 O7 O 0 1 N N N N N N 16.576 -10.487 17.780 -5.319 0.272 -2.201 O3 00W 32
1ZV N3 N7 N 0 1 N N N N N N 16.900 -12.362 16.717 -4.286 2.352 -1.744 N3 8AC 33
1ZV C11 C23 C 0 1 N N N N N N 16.506 -13.762 16.555 -4.224 3.109 -0.487 C11 8AC 34
1ZV C21 C24 C 0 1 N N N N N N 16.601 -14.709 17.758 -3.378 4.368 -0.692 C21 8AC 35
1ZV C31 C25 C 0 1 N N N N N N 15.647 -15.875 18.091 -2.603 4.675 0.591 C31 8AC 36
1ZV C41 C26 C 0 1 N N N N N N 16.248 -17.304 18.343 -1.237 5.265 0.232 C41 8AC 37
1ZV C51 C27 C 0 1 N N N N N N 15.679 -18.249 19.462 -0.192 4.779 1.238 C51 8AC 38
1ZV C61 C28 C 0 1 N N N N N N 16.667 -19.000 20.369 0.813 3.868 0.530 C61 8AC 39
1ZV C71 C29 C 0 1 N N N N N N 16.921 -18.986 21.869 2.113 3.822 1.335 C71 8AC 40
1ZV C81 C30 C 0 1 N N R N N N 17.869 -18.084 22.506 2.513 2.365 1.574 C81 8AC 41
1ZV O8 O8 O 0 1 N N N N N N 19.113 -18.288 22.552 1.439 1.675 2.217 O8 8AC 42
1ZV H H1 H 0 1 N N N N N N 16.696 -17.259 23.718 3.695 2.029 -0.078 H HMF 43
1ZV HA H3 H 0 1 N N N N N N 19.199 -15.651 23.659 2.477 -0.014 1.425 HA HMF 44
1ZV HB2 H5 H 0 1 N N N N N N 16.826 -15.466 25.330 4.139 -1.398 0.248 HB2 HMF 45
1ZV HB3 H6 H 0 1 N N N N N N 17.293 -17.199 25.063 4.424 -0.089 -0.925 HB3 HMF 46
1ZV HG2 H7 H 0 1 N N N N N N 18.337 -15.223 26.758 5.198 1.388 0.911 HG2 HMF 47
1ZV HG3 H8 H 0 1 N N N N N N 18.706 -17.019 26.594 4.913 0.079 2.083 HG3 HMF 48
1ZV HC2 H9 H 0 1 N N N N N N 20.695 -17.559 24.926 7.025 1.252 -0.682 HC2 HMF 49
1ZV H6 H10 H 0 1 N N N N N N 19.968 -13.750 26.562 6.347 -1.877 2.136 H6 HMF 50
1ZV H3 H11 H 0 1 N N N N N N 23.021 -16.894 24.548 9.255 0.329 -1.171 H3 HMF 51
1ZV H5 H12 H 0 1 N N N N N N 22.320 -13.129 26.314 8.577 -2.800 1.647 H5 HMF 52
1ZV H4 H13 H 0 1 N N N N N N 23.848 -14.744 25.218 10.029 -1.700 -0.009 H4 HMF 53
1ZV HA1 H15 H 0 1 N N N N N N 18.063 -11.980 21.940 1.112 -1.935 -2.853 HA PRO 54
1ZV HB21 H16 H 0 0 N N N N N N 19.049 -12.589 19.288 0.218 -4.290 -1.452 HB2 PRO 55
1ZV HB31 H17 H 0 0 N N N N N N 19.819 -11.579 20.549 1.501 -4.173 -2.689 HB3 PRO 56
1ZV HG21 H18 H 0 0 N N N N N N 20.567 -14.191 19.641 1.755 -4.389 0.256 HG2 PRO 57
1ZV HG31 H19 H 0 0 N N N N N N 21.338 -13.178 20.910 2.996 -4.648 -1.009 HG3 PRO 58
1ZV HD2 H20 H 0 1 N N N N N N 20.565 -14.604 22.509 3.729 -2.466 -0.892 HD2 PRO 59
1ZV HD3 H21 H 0 1 N N N N N N 19.818 -15.614 21.253 2.907 -2.437 0.690 HD3 PRO 60
1ZV H1 H23 H 0 1 N N N N N N 16.384 -10.987 20.934 -1.028 -1.228 -3.333 H1 00W 61
1ZV HA2 H25 H 0 1 N N N N N N 14.628 -12.751 19.518 -3.427 -1.599 -2.695 HA2 00W 62
1ZV HB22 H26 H 0 0 N N N N N N 14.203 -10.266 21.215 -2.579 -2.763 -0.573 HB22 00W 63
1ZV HB32 H27 H 0 0 N N N N N N 12.943 -10.688 19.974 -2.401 -1.140 0.137 HB32 00W 64
1ZV HG22 H28 H 0 0 N N N N N N 12.505 -12.735 21.045 -4.820 -0.703 -0.367 HG22 00W 65
1ZV HG32 H29 H 0 0 N N N N N N 13.867 -12.471 22.206 -4.970 -2.379 -0.948 HG32 00W 66
1ZV HD21 H30 H 0 0 N N N N N N 12.712 -10.605 23.196 -4.262 -3.213 1.277 HD21 00W 67
1ZV HD31 H31 H 0 0 N N N N N N 11.418 -10.694 21.971 -4.113 -1.537 1.858 HD31 00W 68
1ZV HE H32 H 0 1 N N N N N N 11.683 -13.246 23.006 -6.717 -1.892 0.825 HE 00W 69
1ZV HH11 H33 H 0 0 N N N N N N 9.855 -10.689 25.425 -4.677 -2.979 3.437 HH11 00W 70
1ZV HH12 H34 H 0 0 N N N N N N 10.972 -10.137 24.222 -5.928 -3.244 4.526 HH12 00W 71
1ZV HH21 H35 H 0 0 N N N N N N 9.440 -12.967 25.667 -8.447 -2.267 2.353 HH21 00W 72
1ZV HH22 H36 H 0 0 N N N N N N 10.239 -14.123 24.654 -8.110 -2.832 3.899 HH22 00W 73
1ZV H11 H39 H 0 1 N N N N N N 15.515 -12.477 17.279 -4.372 0.722 -0.421 H11 00W 74
1ZV HO H41 H 0 1 N N N N N N 15.944 -9.791 17.914 -6.199 0.586 -1.953 HO 00W 75
1ZV HN H38 H 0 1 N N N N N N 16.938 -11.956 15.804 -3.543 2.625 -2.369 HN 8AC 76
1ZV H111 H42 H 0 0 N N N N N N 15.449 -13.753 16.250 -5.232 3.394 -0.184 H111 8AC 77
1ZV H12 H43 H 0 1 N N N N N N 17.163 -14.181 15.778 -3.773 2.490 0.288 H12 8AC 78
1ZV H21 H44 H 0 1 N N N N N N 17.583 -15.191 17.642 -2.677 4.205 -1.510 H21 8AC 79
1ZV H22 H45 H 0 1 N N N N N N 16.524 -14.043 18.630 -4.030 5.208 -0.933 H22 8AC 80
1ZV H31 H46 H 0 1 N N N N N N 15.121 -15.592 19.015 -3.163 5.393 1.190 H31 8AC 81
1ZV H32 H47 H 0 1 N N N N N N 14.964 -15.972 17.234 -2.464 3.756 1.160 H32 8AC 82
1ZV H41 H48 H 0 1 N N N N N N 16.117 -17.851 17.398 -0.955 4.943 -0.770 H41 8AC 83
1ZV H42 H49 H 0 1 N N N N N N 17.304 -17.140 18.602 -1.292 6.353 0.262 H42 8AC 84
1ZV H51 H50 H 0 1 N N N N N N 15.067 -17.617 20.123 0.330 5.636 1.662 H51 8AC 85
1ZV H52 H51 H 0 1 N N N N N N 15.082 -19.017 18.948 -0.686 4.224 2.036 H52 8AC 86
1ZV H61 H52 H 0 1 N N N N N N 16.396 -20.051 20.189 0.399 2.863 0.450 H61 8AC 87
1ZV H62 H53 H 0 1 N N N N N N 17.640 -18.683 19.965 1.016 4.258 -0.467 H62 8AC 88
1ZV H71 H54 H 0 1 N N N N N N 15.948 -18.748 22.323 2.902 4.329 0.780 H71 8AC 89
1ZV H72 H55 H 0 1 N N N N N N 17.280 -19.998 22.109 1.966 4.320 2.293 H72 8AC 90
1ZV H81 H56 H 0 1 N N N N N N 18.666 -18.720 22.919 3.398 2.330 2.208 H81 8AC 91
1ZV HO8 H58 H 0 1 N N N N N N 19.535 -17.573 23.014 1.241 1.998 3.107 HO8 8AC 92
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
1ZV N CA SING N N 1
1ZV N H SING N N 2
1ZV CA C SING N N 3
1ZV CA CB SING N N 4
1ZV CA HA SING N N 5
1ZV C O DOUB N N 6
1ZV CB CG SING N N 7
1ZV CB HB2 SING N N 8
1ZV CB HB3 SING N N 9
1ZV CG C1 SING N N 10
1ZV CG HG2 SING N N 11
1ZV CG HG3 SING N N 12
1ZV C1 C2 DOUB Y N 13
1ZV C1 C6 SING Y N 14
1ZV C2 C3 SING Y N 15
1ZV C2 HC2 SING N N 16
1ZV C6 C5 DOUB Y N 17
1ZV C6 H6 SING N N 18
1ZV C3 C4 DOUB Y N 19
1ZV C3 H3 SING N N 20
1ZV C5 C4 SING Y N 21
1ZV C5 H5 SING N N 22
1ZV C4 H4 SING N N 23
1ZV N1 CA1 SING N N 24
1ZV N1 CD SING N N 25
1ZV CA1 C7 SING N N 26
1ZV CA1 CB1 SING N N 27
1ZV CA1 HA1 SING N N 28
1ZV C7 O1 DOUB N N 29
1ZV CB1 CG1 SING N N 30
1ZV CB1 HB21 SING N N 31
1ZV CB1 HB31 SING N N 32
1ZV CG1 CD SING N N 33
1ZV CG1 HG21 SING N N 34
1ZV CG1 HG31 SING N N 35
1ZV CD HD2 SING N N 36
1ZV CD HD3 SING N N 37
1ZV N2 CA2 SING N N 38
1ZV N2 H1 SING N N 39
1ZV CA2 C8 SING N N 40
1ZV CA2 CB2 SING N N 41
1ZV CA2 HA2 SING N N 42
1ZV C8 O2 DOUB N N 43
1ZV CB2 CG2 SING N N 44
1ZV CB2 HB22 SING N N 45
1ZV CB2 HB32 SING N N 46
1ZV CG2 CD1 SING N N 47
1ZV CG2 HG22 SING N N 48
1ZV CG2 HG32 SING N N 49
1ZV CD1 NE SING N N 50
1ZV CD1 HD21 SING N N 51
1ZV CD1 HD31 SING N N 52
1ZV NE CZ SING N N 53
1ZV NE HE SING N N 54
1ZV CZ NH1 SING N N 55
1ZV CZ NH2 DOUB N N 56
1ZV NH1 HH11 SING N N 57
1ZV NH1 HH12 SING N N 58
1ZV NH2 HH21 SING N N 59
1ZV NH2 HH22 SING N N 60
1ZV N3 C9 SING N N 61
1ZV N3 C11 SING N N 62
1ZV N3 HN SING N N 63
1ZV C9 O3 SING N N 64
1ZV C9 H11 SING N N 65
1ZV O3 HO SING N N 66
1ZV C11 C21 SING N N 67
1ZV C11 H111 SING N N 68
1ZV C11 H12 SING N N 69
1ZV C21 C31 SING N N 70
1ZV C21 H21 SING N N 71
1ZV C21 H22 SING N N 72
1ZV C31 C41 SING N N 73
1ZV C31 H31 SING N N 74
1ZV C31 H32 SING N N 75
1ZV C41 C51 SING N N 76
1ZV C41 H41 SING N N 77
1ZV C41 H42 SING N N 78
1ZV C51 C61 SING N N 79
1ZV C51 H51 SING N N 80
1ZV C51 H52 SING N N 81
1ZV C61 C71 SING N N 82
1ZV C61 H61 SING N N 83
1ZV C61 H62 SING N N 84
1ZV C71 C81 SING N N 85
1ZV C71 H71 SING N N 86
1ZV C71 H72 SING N N 87
1ZV C81 O8 SING N N 88
1ZV C81 H81 SING N N 89
1ZV O8 HO8 SING N N 90
1ZV C N1 SING N N 91
1ZV C7 N2 SING N N 92
1ZV C8 C9 SING N N 93
1ZV C81 N SING N N 94
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
1ZV SMILES ACDLabs 12.01 "O=C1N3C(C(=O)NC(C(=O)C(O)NCCCCCCCC(O)NC1CCc2ccccc2)CCCNC(=[NH2+])\\N)CCC3"
1ZV InChI InChI 1.03 "InChI=1S/C30H49N7O5/c31-30(32)34-19-9-13-22-26(39)28(41)33-18-8-3-1-2-7-15-25(38)35-23(17-16-21-11-5-4-6-12-21)29(42)37-20-10-14-24(37)27(40)36-22/h4-6,11-12,22-25,28,33,35,38,41H,1-3,7-10,13-20H2,(H,36,40)(H4,31,32,34)/p+1/t22-,23+,24-,25+,28?/m0/s1"
1ZV InChIKey InChI 1.03 SNOALCJXRGNTNQ-VDKCFFHZSA-O
1ZV SMILES_CANONICAL CACTVS 3.385 "NC(=[NH2+])NCCC[C@@H]1NC(=O)[C@@H]2CCCN2C(=O)[C@@H](CCc3ccccc3)N[C@H](O)CCCCCCCN[C@H](O)C1=O"
1ZV SMILES CACTVS 3.385 "NC(=[NH2+])NCCC[CH]1NC(=O)[CH]2CCCN2C(=O)[CH](CCc3ccccc3)N[CH](O)CCCCCCCN[CH](O)C1=O"
1ZV SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)CC[C@@H]2C(=O)N3CCC[C@H]3C(=O)N[C@H](C(=O)[C@H](NCCCCCCC[C@H](N2)O)O)CCCNC(=[NH2+])N"
1ZV SMILES "OpenEye OEToolkits" 1.7.5 "c1ccc(cc1)CCC2C(=O)N3CCCC3C(=O)NC(C(=O)C(NCCCCCCCC(N2)O)O)CCCNC(=[NH2+])N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
1ZV "SYSTEMATIC NAME" ACDLabs 12.01 "amino({3-[(3S,5R,14R,16R,21aS)-5,14-dihydroxy-1,4,17-trioxo-16-(2-phenylethyl)icosahydro-1H-pyrrolo[1,2-d][1,4,7,11]tetraazacyclononadecin-3-yl]propyl}amino)methaniminium"
1ZV "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[azanyl-[3-[(3R,5R,14R,16S,19S)-5,14-dihydroxy-2,15,18-trioxo-3-phenethyl-1,4,13,17-tetrazabicyclo[17.3.0]docosan-16-yl]propylamino]methylidene]azanium"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
1ZV "Create component" 2008-08-27 RCSB
1ZV "Modify subcomponent list" 2011-02-08 RCSB
1ZV "Modify aromatic_flag" 2011-06-04 RCSB
1ZV "Modify descriptor" 2011-06-04 RCSB
1ZV "Modify descriptor" 2012-01-05 RCSB
1ZV "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 1ZV
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C8
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#