data_20V # _chem_comp.id 20V _chem_comp.name ;3-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]-7-nitronaphthalene-1,5-disulfonic acid ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H15 N4 O14 P S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PPNDS; Pyridoxal-5'-phosphate-6-(2'-naphthylazo-6'-nitro-4',8'-disulfonic acid)" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-08-13 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 606.434 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 20V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4LQ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 20V OAK OAK O 0 1 N N N -36.095 2.847 -30.320 -5.552 3.598 0.048 OAK 20V 1 20V PBK PBK P 0 1 N N N -36.820 2.489 -31.721 -4.279 2.993 0.826 PBK 20V 2 20V OAL OAL O 0 1 N N N -37.464 3.891 -32.194 -3.038 3.581 0.275 OAL 20V 3 20V OAC OAC O 0 1 N N N -37.893 1.478 -31.606 -4.391 3.345 2.393 OAC 20V 4 20V OAX OAX O 0 1 N N N -35.646 2.130 -32.784 -4.245 1.394 0.637 OAX 20V 5 20V CAT CAT C 0 1 N N N -35.860 2.303 -34.193 -4.046 0.764 -0.630 CAT 20V 6 20V CBE CBE C 0 1 Y N N -34.701 2.787 -34.836 -4.069 -0.733 -0.456 CBE 20V 7 20V CBC CBC C 0 1 Y N N -34.352 4.149 -34.779 -5.282 -1.429 -0.451 CBC 20V 8 20V CAO CAO C 0 1 N N N -35.088 5.110 -34.083 -6.562 -0.721 -0.615 CAO 20V 9 20V OAB OAB O 0 1 N N N -35.364 6.199 -34.589 -7.607 -1.327 -0.514 OAB 20V 10 20V CBA CBA C 0 1 Y N N -33.199 4.547 -35.442 -5.244 -2.826 -0.285 CBA 20V 11 20V OAH OAH O 0 1 N N N -32.847 5.855 -35.395 -6.391 -3.548 -0.273 OAH 20V 12 20V CAY CAY C 0 1 Y N N -32.399 3.661 -36.152 -4.011 -3.456 -0.134 CAY 20V 13 20V CAA CAA C 0 1 N N N -31.256 4.115 -36.801 -3.959 -4.952 0.044 CAA 20V 14 20V NAW NAW N 0 1 Y N N -32.751 2.365 -36.199 -2.894 -2.767 -0.144 NAW 20V 15 20V CBD CBD C 0 1 Y N N -33.870 1.926 -35.579 -2.880 -1.446 -0.304 CBD 20V 16 20V NAV NAV N 0 1 N N N -34.210 0.629 -35.610 -1.688 -0.780 -0.306 NAV 20V 17 20V NAU NAU N 0 1 N N N -33.352 -0.143 -35.884 -0.585 -1.431 -0.155 NAU 20V 18 20V CAZ CAZ C 0 1 Y N N -33.585 -1.454 -35.838 0.607 -0.765 -0.157 CAZ 20V 19 20V CAR CAR C 0 1 Y N N -33.331 -2.272 -36.942 1.792 -1.470 0.001 CAR 20V 20 20V CBH CBH C 0 1 Y N N -33.552 -3.652 -36.871 3.011 -0.779 -0.004 CBH 20V 21 20V CBG CBG C 0 1 Y N N -33.303 -4.492 -37.976 4.233 -1.459 0.153 CBG 20V 22 20V SBM SBM S 0 1 N N N -32.682 -3.843 -39.571 4.252 -3.209 0.359 SBM 20V 23 20V OAN OAN O 0 1 N N N -31.291 -3.248 -39.392 3.969 -3.493 1.827 OAN 20V 24 20V OAG OAG O 0 1 N N N -33.627 -2.766 -40.141 3.139 -3.711 -0.368 OAG 20V 25 20V OAF OAF O 0 1 N N N -32.572 -5.006 -40.559 5.589 -3.627 0.120 OAF 20V 26 20V CAQ CAQ C 0 1 Y N N -33.527 -5.870 -37.864 5.400 -0.759 0.144 CAQ 20V 27 20V CBB CBB C 0 1 Y N N -33.999 -6.420 -36.666 5.404 0.625 -0.019 CBB 20V 28 20V NBJ NBJ N 1 1 N N N -34.234 -7.731 -36.533 6.692 1.354 -0.024 NBJ 20V 29 20V OAJ OAJ O -1 1 N N N -33.633 -8.692 -37.409 6.706 2.564 -0.165 OAJ 20V 30 20V OAI OAI O 0 1 N N N -35.093 -8.213 -35.499 7.737 0.745 0.113 OAI 20V 31 20V CAS CAS C 0 1 Y N N -34.245 -5.583 -35.579 4.241 1.317 -0.173 CAS 20V 32 20V CBI CBI C 0 1 Y N N -34.023 -4.204 -35.666 3.016 0.630 -0.169 CBI 20V 33 20V CBF CBF C 0 1 Y N N -34.266 -3.376 -34.556 1.798 1.317 -0.327 CBF 20V 34 20V SBL SBL S 0 1 N N N -34.849 -3.998 -33.008 1.796 3.067 -0.533 SBL 20V 35 20V OAM OAM O 0 1 N N N -36.177 -4.727 -33.179 2.940 3.381 -1.315 OAM 20V 36 20V OAE OAE O 0 1 N N N -35.021 -2.829 -32.042 0.584 3.419 -1.384 OAE 20V 37 20V OAD OAD O 0 1 N N N -33.828 -4.970 -32.416 1.557 3.622 0.753 OAD 20V 38 20V CAP CAP C 0 1 Y N N -34.037 -2.008 -34.647 0.627 0.633 -0.326 CAP 20V 39 20V H1 H1 H 0 1 N N N -36.222 3.768 -30.124 -6.401 3.256 0.357 H1 20V 40 20V H2 H2 H 0 1 N N N -38.726 1.873 -31.835 -4.416 4.293 2.582 H2 20V 41 20V H3 H3 H 0 1 N N N -36.679 3.021 -34.345 -4.840 1.063 -1.313 H3 20V 42 20V H4 H4 H 0 1 N N N -36.135 1.334 -34.634 -3.082 1.068 -1.039 H4 20V 43 20V H5 H5 H 0 1 N N N -35.423 4.894 -33.079 -6.570 0.338 -0.826 H5 20V 44 20V H6 H6 H 0 1 N N N -33.590 6.373 -35.108 -6.668 -3.860 -1.146 H6 20V 45 20V H7 H7 H 0 1 N N N -30.760 3.272 -37.305 -3.882 -5.431 -0.932 H7 20V 46 20V H8 H8 H 0 1 N N N -31.535 4.874 -37.546 -3.091 -5.216 0.648 H8 20V 47 20V H9 H9 H 0 1 N N N -30.569 4.558 -36.066 -4.866 -5.290 0.544 H9 20V 48 20V H10 H10 H 0 1 N N N -32.961 -1.835 -37.858 1.774 -2.543 0.126 H10 20V 49 20V H11 H11 H 0 1 N N N -33.334 -6.514 -38.709 6.336 -1.283 0.265 H11 20V 50 20V H12 H12 H 0 1 N N N -34.613 -6.005 -34.655 4.261 2.389 -0.297 H12 20V 51 20V H13 H13 H 0 1 N N N -34.211 -1.374 -33.790 -0.303 1.168 -0.452 H13 20V 52 20V H14 H14 H 0 1 N N N -30.670 -3.727 -39.928 3.957 -4.433 2.051 H14 20V 53 20V H15 H15 H 0 1 N N N -34.460 -2.957 -31.286 0.487 4.365 -1.559 H15 20V 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 20V OAF SBM DOUB N N 1 20V OAG SBM DOUB N N 2 20V SBM OAN SING N N 3 20V SBM CBG SING N N 4 20V CBG CAQ DOUB Y N 5 20V CBG CBH SING Y N 6 20V CAQ CBB SING Y N 7 20V OAJ NBJ SING N N 8 20V CAR CBH DOUB Y N 9 20V CAR CAZ SING Y N 10 20V CBH CBI SING Y N 11 20V CAA CAY SING N N 12 20V CBB NBJ SING N N 13 20V CBB CAS DOUB Y N 14 20V NBJ OAI DOUB N N 15 20V NAW CAY DOUB Y N 16 20V NAW CBD SING Y N 17 20V CAY CBA SING Y N 18 20V NAU CAZ SING N N 19 20V NAU NAV DOUB N N 20 20V CAZ CAP DOUB Y N 21 20V CBI CAS SING Y N 22 20V CBI CBF DOUB Y N 23 20V NAV CBD SING N N 24 20V CBD CBE DOUB Y N 25 20V CBA OAH SING N N 26 20V CBA CBC DOUB Y N 27 20V CBE CBC SING Y N 28 20V CBE CAT SING N N 29 20V CBC CAO SING N N 30 20V CAP CBF SING Y N 31 20V OAB CAO DOUB N N 32 20V CBF SBL SING N N 33 20V CAT OAX SING N N 34 20V OAM SBL DOUB N N 35 20V SBL OAD DOUB N N 36 20V SBL OAE SING N N 37 20V OAX PBK SING N N 38 20V OAL PBK DOUB N N 39 20V PBK OAC SING N N 40 20V PBK OAK SING N N 41 20V OAK H1 SING N N 42 20V OAC H2 SING N N 43 20V CAT H3 SING N N 44 20V CAT H4 SING N N 45 20V CAO H5 SING N N 46 20V OAH H6 SING N N 47 20V CAA H7 SING N N 48 20V CAA H8 SING N N 49 20V CAA H9 SING N N 50 20V CAR H10 SING N N 51 20V CAQ H11 SING N N 52 20V CAS H12 SING N N 53 20V CAP H13 SING N N 54 20V OAN H14 SING N N 55 20V OAE H15 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 20V SMILES ACDLabs 12.01 "O=S(=O)(O)c3c2cc(/N=N/c1nc(c(O)c(c1COP(=O)(O)O)C=O)C)cc(c2cc([N+]([O-])=O)c3)S(=O)(=O)O" 20V InChI InChI 1.03 "InChI=1S/C18H15N4O14PS2/c1-8-17(24)13(6-23)14(7-36-37(27,28)29)18(19-8)21-20-9-2-11-12(15(3-9)38(30,31)32)4-10(22(25)26)5-16(11)39(33,34)35/h2-6,24H,7H2,1H3,(H2,27,28,29)(H,30,31,32)(H,33,34,35)/b21-20+" 20V InChIKey InChI 1.03 CMVLDSZYDWJTCG-QZQOTICOSA-N 20V SMILES_CANONICAL CACTVS 3.385 "Cc1nc(N=Nc2cc3c(cc(cc3[S](O)(=O)=O)[N+]([O-])=O)c(c2)[S](O)(=O)=O)c(CO[P](O)(O)=O)c(C=O)c1O" 20V SMILES CACTVS 3.385 "Cc1nc(N=Nc2cc3c(cc(cc3[S](O)(=O)=O)[N+]([O-])=O)c(c2)[S](O)(=O)=O)c(CO[P](O)(O)=O)c(C=O)c1O" 20V SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(c(c(c(n1)/N=N/c2cc3c(cc(cc3S(=O)(=O)O)[N+](=O)[O-])c(c2)S(=O)(=O)O)COP(=O)(O)O)C=O)O" 20V SMILES "OpenEye OEToolkits" 1.7.6 "Cc1c(c(c(c(n1)N=Nc2cc3c(cc(cc3S(=O)(=O)O)[N+](=O)[O-])c(c2)S(=O)(=O)O)COP(=O)(O)O)C=O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 20V "SYSTEMATIC NAME" ACDLabs 12.01 "3-[(E)-{4-formyl-5-hydroxy-6-methyl-3-[(phosphonooxy)methyl]pyridin-2-yl}diazenyl]-7-nitronaphthalene-1,5-disulfonic acid" 20V "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(E)-[4-methanoyl-6-methyl-5-oxidanyl-3-(phosphonooxymethyl)pyridin-2-yl]diazenyl]-7-nitro-naphthalene-1,5-disulfonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 20V "Create component" 2013-08-13 RCSB 20V "Initial release" 2014-02-12 RCSB 20V "Modify synonyms" 2020-06-05 PDBE # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 20V PPNDS ? ? 2 20V "Pyridoxal-5'-phosphate-6-(2'-naphthylazo-6'-nitro-4',8'-disulfonic acid)" ? ? ##