data_23G # _chem_comp.id 23G _chem_comp.name ;GUANOSINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE ; _chem_comp.type "RNA OH 3 prime terminus" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 N5 O10 P2" _chem_comp.mon_nstd_parent_comp_id G _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-09-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.185 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 23G _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3IVN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 23G P P P 0 1 N N N -30.447 24.891 45.405 5.083 -1.611 -0.274 P 23G 1 23G N1 N1 N 0 1 N N N -27.546 18.981 45.180 -5.599 -1.367 -0.338 N1 23G 2 23G C2 C2 C 0 1 N N N -27.210 20.255 45.543 -4.996 -0.361 -1.032 C2 23G 3 23G N2 N2 N 0 1 N N N -26.442 20.910 44.768 -5.762 0.449 -1.831 N2 23G 4 23G N3 N3 N 0 1 N N N -27.654 20.851 46.642 -3.702 -0.145 -0.958 N3 23G 5 23G C4 C4 C 0 1 Y N N -28.470 20.230 47.493 -2.915 -0.910 -0.192 C4 23G 6 23G C5 C5 C 0 1 Y N N -28.861 18.946 47.189 -3.475 -1.959 0.546 C5 23G 7 23G C6 C6 C 0 1 N N N -28.400 18.318 46.039 -4.869 -2.181 0.457 C6 23G 8 23G O6 O6 O 0 1 N N N -28.742 17.177 45.780 -5.399 -3.083 1.082 O6 23G 9 23G N7 N7 N 0 1 Y N N -29.632 18.563 48.159 -2.465 -2.559 1.222 N7 23G 10 23G C8 C8 C 0 1 Y N N -29.740 19.546 49.017 -1.346 -1.955 0.949 C8 23G 11 23G N9 N9 N 0 1 Y N N -29.029 20.576 48.638 -1.574 -0.928 0.079 N9 23G 12 23G PC PC P 0 1 N N N -27.220 23.710 51.483 0.215 3.545 0.201 PC 23G 13 23G "C1'" "C1'" C 0 1 N N R -28.957 21.873 49.379 -0.567 -0.013 -0.465 "C1'" 23G 14 23G "C2'" "C2'" C 0 1 N N R -27.716 22.800 49.305 -0.510 1.271 0.389 "C2'" 23G 15 23G "O2'" "O2'" O 0 1 N N N -26.809 22.681 50.406 -0.716 2.399 -0.496 "O2'" 23G 16 23G "C3'" "C3'" C 0 1 N N R -28.324 24.187 49.509 0.959 1.330 0.875 "C3'" 23G 17 23G "O3'" "O3'" O 0 1 N N N -28.430 24.445 50.950 1.458 2.669 0.784 "O3'" 23G 18 23G "C4'" "C4'" C 0 1 N N R -29.667 24.015 48.746 1.684 0.429 -0.151 "C4'" 23G 19 23G "O4'" "O4'" O 0 1 N N N -30.054 22.663 48.826 0.732 -0.626 -0.406 "O4'" 23G 20 23G "C5'" "C5'" C 0 1 N N N -29.272 24.170 47.326 2.972 -0.141 0.448 "C5'" 23G 21 23G "O5'" "O5'" O 0 1 N N N -30.012 25.126 46.723 3.680 -0.873 -0.554 "O5'" 23G 22 23G OC1 OC1 O 0 1 N N N -26.194 24.796 51.715 -0.577 4.282 1.394 OC1 23G 23 23G OC2 OC2 O 0 1 N N N -27.362 23.029 52.804 0.685 4.525 -0.803 OC2 23G 24 23G OP1 OP1 O 0 1 N N N -30.125 26.036 44.664 6.053 -0.636 0.273 OP1 23G 25 23G OP2 OP2 O 0 1 N N N -31.884 24.769 45.380 4.861 -2.801 0.788 OP2 23G 26 23G HN1 HN1 H 0 1 N N N -27.196 18.556 44.345 -6.558 -1.497 -0.412 HN1 23G 27 23G HN2 HN2 H 0 1 N N N -26.187 21.850 44.994 -6.719 0.303 -1.896 HN2 23G 28 23G HN2A HN2A H 0 0 N N N -26.093 20.484 43.933 -5.348 1.170 -2.332 HN2A 23G 29 23G H8 H8 H 0 1 N N N -30.336 19.511 49.917 -0.380 -2.225 1.351 H8 23G 30 23G "H1'" "H1'" H 0 1 N N N -28.958 21.562 50.434 -0.814 0.238 -1.496 "H1'" 23G 31 23G "H2'" "H2'" H 0 1 N N N -27.166 22.579 48.379 -1.226 1.254 1.210 "H2'" 23G 32 23G "H3'" "H3'" H 0 1 N N N -27.766 25.060 49.139 1.055 0.943 1.890 "H3'" 23G 33 23G "H4'" "H4'" H 0 1 N N N -30.447 24.694 49.120 1.898 0.983 -1.065 "H4'" 23G 34 23G "H5'" "H5'" H 0 1 N N N -28.211 24.455 47.278 3.596 0.675 0.811 "H5'" 23G 35 23G "H5'A" "H5'A" H 0 0 N N N -29.427 23.214 46.804 2.724 -0.805 1.276 "H5'A" 23G 36 23G OP3 OP3 O 0 1 N Y N -29.684 23.479 44.786 5.654 -2.220 -1.651 OP3 23G 37 23G H11 H11 H 0 1 N N N -25.906 24.772 52.620 -1.388 4.725 1.112 H11 23G 38 23G HOP2 HOP2 H 0 0 N N N -32.254 25.484 44.875 4.236 -3.478 0.494 HOP2 23G 39 23G HOP3 HOP3 H 0 0 N Y N -29.159 23.709 44.029 6.499 -2.680 -1.557 HOP3 23G 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 23G P "O5'" SING N N 1 23G P OP1 DOUB N N 2 23G P OP2 SING N N 3 23G N1 C2 SING N N 4 23G N1 C6 SING N N 5 23G N1 HN1 SING N N 6 23G C2 N2 SING N N 7 23G C2 N3 DOUB N N 8 23G N2 HN2 SING N N 9 23G N2 HN2A SING N N 10 23G N3 C4 SING N N 11 23G C4 C5 DOUB Y N 12 23G C4 N9 SING Y N 13 23G C5 C6 SING N N 14 23G C5 N7 SING Y N 15 23G C6 O6 DOUB N N 16 23G N7 C8 DOUB Y N 17 23G C8 N9 SING Y N 18 23G C8 H8 SING N N 19 23G N9 "C1'" SING N N 20 23G PC "O2'" SING N N 21 23G PC "O3'" SING N N 22 23G PC OC1 SING N N 23 23G PC OC2 DOUB N N 24 23G "C1'" "C2'" SING N N 25 23G "C1'" "O4'" SING N N 26 23G "C1'" "H1'" SING N N 27 23G "C2'" "O2'" SING N N 28 23G "C2'" "C3'" SING N N 29 23G "C2'" "H2'" SING N N 30 23G "C3'" "O3'" SING N N 31 23G "C3'" "C4'" SING N N 32 23G "C3'" "H3'" SING N N 33 23G "C4'" "O4'" SING N N 34 23G "C4'" "C5'" SING N N 35 23G "C4'" "H4'" SING N N 36 23G "C5'" "O5'" SING N N 37 23G "C5'" "H5'" SING N N 38 23G "C5'" "H5'A" SING N N 39 23G P OP3 SING N N 40 23G OC1 H11 SING N N 41 23G OP2 HOP2 SING N N 42 23G OP3 HOP3 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 23G SMILES ACDLabs 11.02 "O=C4NC(=Nc1c4ncn1C2OC(C3OP(=O)(O)OC23)COP(=O)(O)O)N" 23G SMILES_CANONICAL CACTVS 3.352 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@H]4O[P](O)(=O)O[C@@H]34" 23G SMILES CACTVS 3.352 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(O)=O)[CH]4O[P](O)(=O)O[CH]34" 23G SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1[C@H]3[C@H]4[C@@H]([C@H](O3)COP(=O)(O)O)O[P@@](=O)(O4)O)N=C(NC2=O)N" 23G SMILES "OpenEye OEToolkits" 1.7.0 "c1nc2c(n1C3C4C(C(O3)COP(=O)(O)O)OP(=O)(O4)O)N=C(NC2=O)N" 23G InChI InChI 1.03 "InChI=1S/C10H13N5O10P2/c11-10-13-7-4(8(16)14-10)12-2-15(7)9-6-5(24-27(20,21)25-6)3(23-9)1-22-26(17,18)19/h2-3,5-6,9H,1H2,(H,20,21)(H2,17,18,19)(H3,11,13,14,16)/t3-,5-,6-,9-/m1/s1" 23G InChIKey InChI 1.03 ZBMMALUAVDLKSL-UUOKFMHZSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 23G "SYSTEMATIC NAME" ACDLabs 11.02 "[(2S,3aR,4R,6R,6aR)-6-(2-amino-6-oxo-1,6-dihydro-9H-purin-9-yl)-2-hydroxy-2-oxidotetrahydrofuro[3,4-d][1,3,2]dioxaphosphol-4-yl]methyl dihydrogen phosphate" 23G "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[(1R,3S,5R,6R,8R)-8-(2-azanyl-6-oxo-1H-purin-9-yl)-3-hydroxy-3-oxo-2,4,7-trioxa-3$l^{5}-phosphabicyclo[3.3.0]octan-6-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 23G "Create component" 2009-09-09 RCSB 23G "Modify aromatic_flag" 2011-06-04 RCSB 23G "Modify descriptor" 2011-06-04 RCSB #