data_25E # _chem_comp.id 25E _chem_comp.name "N-({(2Z)-2-[(4-hydroxyphenyl)methylidene]hydrazino}carbonothioyl)-beta-D-glucopyranosylamine" _chem_comp.type D-saccharide _chem_comp.pdbx_type ATOMS _chem_comp.formula "C14 H19 N3 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;4-hydroxybenzaldehyde-4-(beta-D-glucopyranosyl) thiosemicarbazone; N-({(2Z)-2-[(4-hydroxyphenyl)methylidene]hydrazino}carbonothioyl)-beta-D-glucosylamine; N-({(2Z)-2-[(4-hydroxyphenyl)methylidene]hydrazino}carbonothioyl)-D-glucosylamine; N-({(2Z)-2-[(4-hydroxyphenyl)methylidene]hydrazino}carbonothioyl)-glucosylamine ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-05-03 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 357.382 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 25E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3MTD _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 25E "4-hydroxybenzaldehyde-4-(beta-D-glucopyranosyl) thiosemicarbazone" PDB ? 2 25E "N-({(2Z)-2-[(4-hydroxyphenyl)methylidene]hydrazino}carbonothioyl)-beta-D-glucosylamine" PDB ? 3 25E "N-({(2Z)-2-[(4-hydroxyphenyl)methylidene]hydrazino}carbonothioyl)-D-glucosylamine" PDB ? 4 25E "N-({(2Z)-2-[(4-hydroxyphenyl)methylidene]hydrazino}carbonothioyl)-glucosylamine" PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 25E C1 C1 C 0 1 N N R 33.597 22.829 27.785 -2.003 -0.352 -0.265 C1 25E 1 25E C2 C2 C 0 1 N N R 33.869 23.102 26.303 -2.964 -1.496 0.066 C2 25E 2 25E O2 O2 O 0 1 N N N 34.021 24.514 26.079 -2.638 -2.639 -0.726 O2 25E 3 25E C3 C3 C 0 1 N N S 32.704 22.532 25.476 -4.398 -1.052 -0.240 C3 25E 4 25E O3 O3 O 0 1 N N N 32.975 22.676 24.079 -5.309 -2.086 0.136 O3 25E 5 25E C4 C4 C 0 1 N N S 32.445 21.052 25.819 -4.709 0.219 0.558 C4 25E 6 25E O4 O4 O 0 1 N N N 31.241 20.637 25.192 -6.019 0.683 0.225 O4 25E 7 25E C5 C5 C 0 1 N N R 32.323 20.827 27.348 -3.680 1.296 0.207 C5 25E 8 25E O5 O5 O 0 1 N N N 33.467 21.393 28.019 -2.366 0.808 0.487 O5 25E 9 25E C6 C6 C 0 1 N N N 32.189 19.353 27.790 -3.947 2.549 1.044 C6 25E 10 25E O6 O6 O 0 1 N N N 33.232 18.541 27.227 -3.061 3.593 0.635 O6 25E 11 25E NAL NAL N 0 1 N N N 34.700 23.246 28.649 -0.635 -0.748 0.079 NAL 25E 12 25E CAM CAM C 0 1 N N N 34.495 23.953 29.761 0.399 -0.329 -0.678 CAM 25E 13 25E NAN NAN N 0 1 N N N 35.560 24.267 30.496 1.657 -0.693 -0.361 NAN 25E 14 25E SAO SAO S 0 1 N N N 32.890 24.463 30.245 0.113 0.668 -2.040 SAO 25E 15 25E NAP NAP N 0 1 N N N 36.692 23.905 30.147 1.891 -1.508 0.754 NAP 25E 16 25E CAQ CAQ C 0 1 N N N 37.772 24.202 30.857 3.107 -1.763 1.129 CAQ 25E 17 25E CAR CAR C 0 1 Y N N 37.732 24.936 32.051 4.205 -0.866 0.726 CAR 25E 18 25E CAS CAS C 0 1 Y N N 36.506 25.240 32.650 3.921 0.393 0.190 CAS 25E 19 25E CAT CAT C 0 1 Y N N 36.453 25.962 33.835 4.951 1.229 -0.185 CAT 25E 20 25E CAU CAU C 0 1 Y N N 37.631 26.384 34.438 6.270 0.821 -0.032 CAU 25E 21 25E CAV CAV C 0 1 Y N N 38.867 26.088 33.854 6.557 -0.430 0.500 CAV 25E 22 25E CAW CAW C 0 1 Y N N 38.916 25.359 32.660 5.534 -1.270 0.883 CAW 25E 23 25E OAX OAX O 0 1 N N N 37.552 27.086 35.600 7.282 1.647 -0.404 OAX 25E 24 25E H1 H1 H 0 1 N N N 32.682 23.393 28.020 -2.059 -0.126 -1.331 H1 25E 25 25E H2 H2 H 0 1 N N N 34.805 22.613 25.993 -2.879 -1.748 1.123 H2 25E 26 25E HO2 HO2 H 0 1 N Y N 34.189 24.673 25.158 -1.741 -2.971 -0.586 HO2 25E 27 25E H3 H3 H 0 1 N N N 31.797 23.101 25.728 -4.497 -0.846 -1.306 H3 25E 28 25E HO3 HO3 H 0 1 N Y N 32.250 22.321 23.577 -5.166 -2.924 -0.326 HO3 25E 29 25E H4 H4 H 0 1 N N N 33.300 20.463 25.456 -4.659 0.001 1.625 H4 25E 30 25E HO4 HO4 H 0 1 N Y N 31.074 19.725 25.399 -6.722 0.047 0.417 HO4 25E 31 25E H5 H5 H 0 1 N N N 31.383 21.325 27.629 -3.758 1.543 -0.852 H5 25E 32 25E H61 H6 H 0 1 N N N 32.253 19.304 28.887 -4.978 2.870 0.899 H61 25E 33 25E H62 H6A H 0 1 N N N 31.216 18.967 27.451 -3.781 2.324 2.098 H62 25E 34 25E HO6 HO6 H 0 1 N Y N 33.125 17.642 27.515 -3.175 4.419 1.125 HO6 25E 35 25E HNAL HNAL H 0 0 N N N 35.635 22.994 28.399 -0.473 -1.312 0.851 HNAL 25E 36 25E HNAN HNAN H 0 0 N N N 35.445 24.799 31.335 2.401 -0.391 -0.906 HNAN 25E 37 25E HAQ HAQ H 0 1 N N N 38.731 23.861 30.497 3.314 -2.632 1.735 HAQ 25E 38 25E HAS HAS H 0 1 N N N 35.589 24.909 32.185 2.896 0.711 0.070 HAS 25E 39 25E HAT HAT H 0 1 N N N 35.500 26.194 34.286 4.732 2.202 -0.599 HAT 25E 40 25E HAV HAV H 0 1 N N N 39.781 26.421 34.323 7.584 -0.743 0.617 HAV 25E 41 25E HAW HAW H 0 1 N N N 39.869 25.124 32.210 5.758 -2.240 1.301 HAW 25E 42 25E HOAX HOAX H 0 0 N N N 38.427 27.308 35.897 7.588 2.235 0.300 HOAX 25E 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 25E C2 C1 SING N N 1 25E C1 O5 SING N N 2 25E C1 NAL SING N N 3 25E C1 H1 SING N N 4 25E C3 C2 SING N N 5 25E O2 C2 SING N N 6 25E C2 H2 SING N N 7 25E O2 HO2 SING N N 8 25E O3 C3 SING N N 9 25E C3 C4 SING N N 10 25E C3 H3 SING N N 11 25E O3 HO3 SING N N 12 25E O4 C4 SING N N 13 25E C4 C5 SING N N 14 25E C4 H4 SING N N 15 25E O4 HO4 SING N N 16 25E C5 C6 SING N N 17 25E C5 O5 SING N N 18 25E C5 H5 SING N N 19 25E O6 C6 SING N N 20 25E C6 H61 SING N N 21 25E C6 H62 SING N N 22 25E O6 HO6 SING N N 23 25E NAL CAM SING N N 24 25E NAL HNAL SING N N 25 25E CAM SAO DOUB N N 26 25E CAM NAN SING N N 27 25E NAP NAN SING N N 28 25E NAN HNAN SING N N 29 25E NAP CAQ DOUB N Z 30 25E CAQ CAR SING N N 31 25E CAQ HAQ SING N N 32 25E CAR CAS DOUB Y N 33 25E CAR CAW SING Y N 34 25E CAS CAT SING Y N 35 25E CAS HAS SING N N 36 25E CAT CAU DOUB Y N 37 25E CAT HAT SING N N 38 25E CAV CAU SING Y N 39 25E CAU OAX SING N N 40 25E CAW CAV DOUB Y N 41 25E CAV HAV SING N N 42 25E CAW HAW SING N N 43 25E OAX HOAX SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 25E SMILES ACDLabs 12.01 "S=C(NC1OC(C(O)C(O)C1O)CO)N/N=C\c2ccc(O)cc2" 25E SMILES_CANONICAL CACTVS 3.370 "OC[C@H]1O[C@@H](NC(=S)N\N=C/c2ccc(O)cc2)[C@H](O)[C@@H](O)[C@@H]1O" 25E SMILES CACTVS 3.370 "OC[CH]1O[CH](NC(=S)NN=Cc2ccc(O)cc2)[CH](O)[CH](O)[CH]1O" 25E SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1/C=N\NC(=S)N[C@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O" 25E SMILES "OpenEye OEToolkits" 1.7.0 "c1cc(ccc1C=NNC(=S)NC2C(C(C(C(O2)CO)O)O)O)O" 25E InChI InChI 1.03 "InChI=1S/C14H19N3O6S/c18-6-9-10(20)11(21)12(22)13(23-9)16-14(24)17-15-5-7-1-3-8(19)4-2-7/h1-5,9-13,18-22H,6H2,(H2,16,17,24)/b15-5-/t9-,10-,11+,12-,13-/m1/s1" 25E InChIKey InChI 1.03 QWGDGYDWAFWBHA-ARDSGTFASA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 25E "SYSTEMATIC NAME" ACDLabs 12.01 "N-{[(2Z)-2-(4-hydroxybenzylidene)hydrazinyl]carbothioyl}-beta-D-glucopyranosylamine" 25E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "1-[(Z)-(4-hydroxyphenyl)methylideneamino]-3-[(2R,3R,4S,5S,6R)-3,4,5-trihydroxy-6-(hydroxymethyl)oxan-2-yl]thiourea" # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 25E "CARBOHYDRATE ISOMER" D PDB ? 25E "CARBOHYDRATE RING" pyranose PDB ? 25E "CARBOHYDRATE ANOMER" beta PDB ? 25E "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 25E "Create component" 2010-05-03 RCSB 25E "Modify aromatic_flag" 2011-06-04 RCSB 25E "Modify descriptor" 2011-06-04 RCSB 25E "Other modification" 2020-07-03 RCSB 25E "Modify synonyms" 2020-07-17 RCSB 25E "Modify internal type" 2020-07-17 RCSB 25E "Modify linking type" 2020-07-17 RCSB 25E "Modify atom id" 2020-07-17 RCSB 25E "Modify component atom id" 2020-07-17 RCSB 25E "Modify leaving atom flag" 2020-07-17 RCSB ##