data_28X # _chem_comp.id 28X _chem_comp.name "O-[(R)-{[(3R)-3,4-dihydroxybutyl]oxy}(hydroxy)phosphoryl]-L-threonine" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C8 H18 N O8 P" _chem_comp.mon_nstd_parent_comp_id THR _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-09-11 _chem_comp.pdbx_modified_date 2013-10-25 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 287.204 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 28X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4MLU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 28X C C C 0 1 N N N 15.063 11.792 18.108 3.567 1.374 -0.098 C1 28X 1 28X CA CA C 0 1 N N S 13.602 11.920 18.432 4.025 0.067 0.495 C2 28X 2 28X N N N 0 1 N N N 12.674 11.189 17.560 4.075 0.184 1.959 N3 28X 3 28X CB CB C 0 1 N N R 13.362 11.466 19.867 3.046 -1.042 0.105 C56 28X 4 28X OG1 OG1 O 0 1 N N N 11.966 11.515 20.183 1.724 -0.670 0.500 O58 28X 5 28X P59 P59 P 0 1 N N N 11.036 10.206 20.362 0.509 -0.510 -0.545 P59 28X 6 28X O60 O60 O 0 1 N N N 11.018 9.494 19.070 0.360 -1.761 -1.322 O60 28X 7 28X O69 O69 O 0 1 N N N 9.592 10.803 20.719 0.819 0.711 -1.547 O69 28X 8 28X CG2 CG2 C 0 1 N N N 14.088 12.343 20.886 3.441 -2.342 0.808 C70 28X 9 28X O O O 0 1 N N N 15.547 10.715 17.831 2.977 2.175 0.588 O71 28X 10 28X O61 O61 O 0 1 N N N 11.438 9.259 21.586 -0.854 -0.212 0.259 O61 28X 11 28X C62 C62 C 0 1 N N N 12.621 9.337 22.363 -2.130 -0.124 -0.379 C62 28X 12 28X C63 C63 C 0 1 N N N 13.490 8.143 21.967 -3.205 0.168 0.670 C63 28X 13 28X C64 C64 C 0 1 N N R 13.710 7.971 20.450 -4.571 0.263 -0.013 C64 28X 14 28X O66 O66 O 0 1 N N N 14.914 7.259 20.283 -4.917 -1.009 -0.565 O66 28X 15 28X C67 C67 C 0 1 N N N 12.622 7.092 19.840 -5.627 0.678 1.014 C67 28X 16 28X O68 O68 O 0 1 N N N 12.327 7.177 18.432 -6.879 0.879 0.356 O68 28X 17 28X HA HA H 0 1 N N N 13.344 12.988 18.381 5.018 -0.176 0.116 H1 28X 18 28X H2 H2 H 0 1 N N N 11.735 11.345 17.866 3.166 0.408 2.334 H2 28X 19 28X HB HB H 0 1 N N N 13.730 10.435 19.972 3.075 -1.189 -0.975 H57 28X 20 28X H58 H58 H 0 1 N N N 8.979 10.587 20.026 0.929 1.564 -1.105 H58 28X 21 28X HG21 HG21 H 0 0 N N N 13.882 11.973 21.901 2.743 -3.132 0.530 H59 28X 22 28X HG22 HG22 H 0 0 N N N 15.171 12.307 20.695 4.449 -2.626 0.507 H60 28X 23 28X HG23 HG23 H 0 0 N N N 13.734 13.381 20.795 3.412 -2.195 1.888 H61 28X 24 28X H64 H64 H 0 1 N N N 13.151 10.277 22.152 -2.113 0.680 -1.115 H64 28X 25 28X H65 H65 H 0 1 N N N 12.375 9.287 23.434 -2.354 -1.067 -0.876 H65 28X 26 28X H66 H66 H 0 1 N N N 13.009 7.230 22.348 -3.222 -0.635 1.406 H66 28X 27 28X H67 H67 H 0 1 N N N 14.474 8.265 22.443 -2.981 1.112 1.167 H67 28X 28 28X H68 H68 H 0 1 N N N 13.734 8.953 19.955 -4.528 1.006 -0.810 H68 28X 29 28X H69 H69 H 0 1 N N N 15.633 7.762 20.647 -4.973 -1.719 0.089 H69 28X 30 28X H70 H70 H 0 1 N N N 11.689 7.326 20.374 -5.733 -0.107 1.763 H70 28X 31 28X H71 H71 H 0 1 N N N 12.908 6.049 20.041 -5.318 1.604 1.499 H71 28X 32 28X H72 H72 H 0 1 N N N 11.818 7.961 18.261 -7.596 1.145 0.947 H72 28X 33 28X H H H 0 1 N Y N 12.776 11.513 16.619 4.441 -0.659 2.376 H3 28X 34 28X OXT OXT O 0 1 N Y N ? ? ? 3.819 1.651 -1.387 OXT 28X 35 28X HXT HXT H 0 1 N Y N ? ? ? 3.505 2.502 -1.723 HXT 28X 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 28X N CA SING N N 1 28X O C DOUB N N 2 28X C CA SING N N 3 28X CA CB SING N N 4 28X O68 C67 SING N N 5 28X O60 P59 DOUB N N 6 28X C67 C64 SING N N 7 28X CB OG1 SING N N 8 28X CB CG2 SING N N 9 28X OG1 P59 SING N N 10 28X O66 C64 SING N N 11 28X P59 O69 SING N N 12 28X P59 O61 SING N N 13 28X C64 C63 SING N N 14 28X O61 C62 SING N N 15 28X C63 C62 SING N N 16 28X CA HA SING N N 17 28X N H2 SING N N 18 28X CB HB SING N N 19 28X O69 H58 SING N N 20 28X CG2 HG21 SING N N 21 28X CG2 HG22 SING N N 22 28X CG2 HG23 SING N N 23 28X C62 H64 SING N N 24 28X C62 H65 SING N N 25 28X C63 H66 SING N N 26 28X C63 H67 SING N N 27 28X C64 H68 SING N N 28 28X O66 H69 SING N N 29 28X C67 H70 SING N N 30 28X C67 H71 SING N N 31 28X O68 H72 SING N N 32 28X N H SING N N 33 28X C OXT SING N N 34 28X OXT HXT SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 28X SMILES ACDLabs 12.01 "O=C(O)C(N)C(OP(=O)(OCCC(O)CO)O)C" 28X InChI InChI 1.03 "InChI=1S/C8H18NO8P/c1-5(7(9)8(12)13)17-18(14,15)16-3-2-6(11)4-10/h5-7,10-11H,2-4,9H2,1H3,(H,12,13)(H,14,15)/t5-,6-,7+/m1/s1" 28X InChIKey InChI 1.03 ANWNUXMSYHAJDP-QYNIQEEDSA-N 28X SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O[P](O)(=O)OCC[C@@H](O)CO)[C@H](N)C(O)=O" 28X SMILES CACTVS 3.385 "C[CH](O[P](O)(=O)OCC[CH](O)CO)[CH](N)C(O)=O" 28X SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]([C@@H](C(=O)O)N)OP(=O)(O)OCC[C@H](CO)O" 28X SMILES "OpenEye OEToolkits" 1.7.6 "CC(C(C(=O)O)N)OP(=O)(O)OCCC(CO)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 28X "SYSTEMATIC NAME" ACDLabs 12.01 "O-[(R)-{[(3R)-3,4-dihydroxybutyl]oxy}(hydroxy)phosphoryl]-L-threonine" 28X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R)-2-azanyl-3-[[(3R)-3,4-bis(oxidanyl)butoxy]-oxidanyl-phosphoryl]oxy-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 28X "Create component" 2013-09-11 RCSB 28X "Initial release" 2013-10-30 RCSB #