data_2AD # _chem_comp.id 2AD _chem_comp.name "2'-AMINO-2'-DEOXYADENOSINE" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C10 H14 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-02-04 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 266.257 _chem_comp.one_letter_code X _chem_comp.three_letter_code 2AD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1OBC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2AD "O5'" O5* O 0 1 N N N 2.507 52.349 59.996 -2.302 0.750 -4.305 "O5'" 2AD 1 2AD "C5'" C5* C 0 1 N N N 1.384 51.926 59.206 -1.225 -0.175 -4.142 "C5'" 2AD 2 2AD "C4'" C4* C 0 1 N N R 0.120 52.600 59.691 -0.195 0.406 -3.172 "C4'" 2AD 3 2AD "O4'" O4* O 0 1 N N N 0.262 54.039 59.573 -0.793 0.605 -1.880 "O4'" 2AD 4 2AD "C3'" C3* C 0 1 N N S -1.115 52.277 58.866 0.970 -0.584 -2.989 "C3'" 2AD 5 2AD "O3'" O3* O 0 1 N N N -1.719 51.072 59.328 2.203 0.008 -3.402 "O3'" 2AD 6 2AD "C2'" C2* C 0 1 N N R -2.011 53.490 59.091 0.990 -0.871 -1.468 "C2'" 2AD 7 2AD "C1'" C1* C 0 1 N N R -1.009 54.616 59.327 0.233 0.354 -0.896 "C1'" 2AD 8 2AD N9 N9 N 0 1 Y N N -0.892 55.555 58.217 -0.363 0.037 0.403 N9 2AD 9 2AD C8 C8 C 0 1 Y N N -0.800 55.285 56.872 -1.577 -0.547 0.612 C8 2AD 10 2AD N7 N7 N 0 1 Y N N -0.671 56.355 56.128 -1.792 -0.681 1.888 N7 2AD 11 2AD C5 C5 C 0 1 Y N N -0.687 57.399 57.041 -0.733 -0.193 2.578 C5 2AD 12 2AD C6 C6 C 0 1 Y N N -0.586 58.790 56.885 -0.411 -0.074 3.940 C6 2AD 13 2AD N6 N6 N 0 1 N N N -0.432 59.391 55.703 -1.286 -0.517 4.916 N6 2AD 14 2AD N1 N1 N 0 1 Y N N -0.649 59.554 57.999 0.753 0.473 4.270 N1 2AD 15 2AD C2 C2 C 0 1 Y N N -0.803 58.947 59.184 1.595 0.898 3.346 C2 2AD 16 2AD N3 N3 N 0 1 Y N N -0.904 57.651 59.458 1.336 0.807 2.058 N3 2AD 17 2AD C4 C4 C 0 1 Y N N -0.835 56.922 58.330 0.198 0.268 1.633 C4 2AD 18 2AD N N N 0 1 N N N -3.027 53.453 60.159 2.368 -0.919 -0.961 N 2AD 19 2AD "H5'" H5* H 0 1 N N N 2.990 51.554 60.336 -2.927 0.345 -4.922 "H5'" 2AD 20 2AD "H5'1" 1H5* H 0 0 N N N 1.558 52.195 58.154 -0.753 -0.357 -5.107 "H5'1" 2AD 21 2AD "H5'2" 2H5* H 0 0 N N N 1.269 50.836 59.301 -1.610 -1.113 -3.743 "H5'2" 2AD 22 2AD "H4'" H4* H 0 1 N N N -0.012 52.236 60.721 0.181 1.354 -3.555 "H4'" 2AD 23 2AD "H3'" H3* H 0 1 N N N -0.906 52.106 57.800 0.783 -1.501 -3.548 "H3'" 2AD 24 2AD HA HA H 0 1 N N N -2.704 51.162 59.293 2.133 0.163 -4.354 HA 2AD 25 2AD "H2'" H2* H 0 1 N N N -2.674 53.589 58.218 0.461 -1.796 -1.239 "H2'" 2AD 26 2AD "H1'" H1* H 0 1 N N N -1.379 55.196 60.185 0.901 1.212 -0.811 "H1'" 2AD 27 2AD H8 H8 H 0 1 N N N -0.831 54.301 56.474 -2.260 -0.853 -0.166 H8 2AD 28 2AD H6N1 1H6N H 0 0 N N N -0.383 58.847 54.871 -1.053 -0.429 5.854 H6N1 2AD 29 2AD H6N2 2H6N H 0 0 N N N -0.366 60.383 55.654 -2.134 -0.915 4.663 H6N2 2AD 30 2AD H2 H2 H 0 1 N Y N -0.851 59.595 60.024 2.531 1.338 3.658 H2 2AD 31 2AD HN1 1HN H 0 1 N N N -3.247 52.474 60.390 2.813 -1.706 -1.408 HN1 2AD 32 2AD HN2 2HN H 0 1 N N N -2.663 53.930 60.996 2.832 -0.091 -1.303 HN2 2AD 33 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2AD "O5'" "C5'" SING N N 1 2AD "O5'" "H5'" SING N N 2 2AD "C5'" "C4'" SING N N 3 2AD "C5'" "H5'1" SING N N 4 2AD "C5'" "H5'2" SING N N 5 2AD "C4'" "O4'" SING N N 6 2AD "C4'" "C3'" SING N N 7 2AD "C4'" "H4'" SING N N 8 2AD "O4'" "C1'" SING N N 9 2AD "C3'" "O3'" SING N N 10 2AD "C3'" "C2'" SING N N 11 2AD "C3'" "H3'" SING N N 12 2AD "O3'" HA SING N N 13 2AD "C2'" "C1'" SING N N 14 2AD "C2'" N SING N N 15 2AD "C2'" "H2'" SING N N 16 2AD "C1'" N9 SING N N 17 2AD "C1'" "H1'" SING N N 18 2AD N9 C8 SING Y N 19 2AD N9 C4 SING Y N 20 2AD C8 N7 DOUB Y N 21 2AD C8 H8 SING N N 22 2AD N7 C5 SING Y N 23 2AD C5 C6 DOUB Y N 24 2AD C5 C4 SING Y N 25 2AD C6 N6 SING N N 26 2AD C6 N1 SING Y N 27 2AD N6 H6N1 SING N N 28 2AD N6 H6N2 SING N N 29 2AD N1 C2 DOUB Y N 30 2AD C2 N3 SING Y N 31 2AD C2 H2 SING N N 32 2AD N3 C4 DOUB Y N 33 2AD N HN1 SING N N 34 2AD N HN2 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2AD SMILES ACDLabs 10.04 "n2c1c(ncnc1n(c2)C3OC(C(O)C3N)CO)N" 2AD SMILES_CANONICAL CACTVS 3.341 "N[C@@H]1[C@H](O)[C@@H](CO)O[C@H]1n2cnc3c(N)ncnc23" 2AD SMILES CACTVS 3.341 "N[CH]1[CH](O)[CH](CO)O[CH]1n2cnc3c(N)ncnc23" 2AD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)N)N" 2AD SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CO)O)N)N" 2AD InChI InChI 1.03 "InChI=1S/C10H14N6O3/c11-5-7(18)4(1-17)19-10(5)16-3-15-6-8(12)13-2-14-9(6)16/h2-5,7,10,17-18H,1,11H2,(H2,12,13,14)/t4-,5-,7-,10-/m1/s1" 2AD InChIKey InChI 1.03 CQKMBZHLOYVGHW-QYYRPYCUSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2AD "SYSTEMATIC NAME" ACDLabs 10.04 "2'-amino-2'-deoxyadenosine" 2AD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,4R,5R)-4-amino-5-(6-aminopurin-9-yl)-2-(hydroxymethyl)oxolan-3-ol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2AD "Create component" 2003-02-04 EBI 2AD "Modify descriptor" 2011-06-04 RCSB #