data_2AU # _chem_comp.id 2AU _chem_comp.name "2'-AMINOURIDINE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C9 H14 N3 O8 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-04-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 323.197 _chem_comp.one_letter_code U _chem_comp.three_letter_code 2AU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2BQ2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2AU OP3 O3P O 0 1 N Y N 10.056 6.919 3.414 -0.107 -2.073 6.241 OP3 2AU 1 2AU P P P 0 1 N N N 9.484 6.688 2.066 0.446 -1.873 4.859 P 2AU 2 2AU OP1 O1P O 0 1 N N N 10.394 6.444 0.920 1.980 -1.366 4.795 OP1 2AU 3 2AU "O5'" O5* O 0 1 N N N 8.541 7.922 1.705 -0.353 -0.795 3.953 "O5'" 2AU 4 2AU "C5'" C5* C 0 1 N N N 8.905 8.862 0.694 0.105 -0.548 2.636 "C5'" 2AU 5 2AU "C4'" C4* C 0 1 N N R 7.679 9.296 -0.079 -0.801 0.494 1.992 "C4'" 2AU 6 2AU "O4'" O4* O 0 1 N N N 7.329 8.244 -1.023 -0.692 1.715 2.752 "O4'" 2AU 7 2AU "C3'" C3* C 0 1 N N S 6.428 9.517 0.764 -0.394 0.849 0.567 "C3'" 2AU 8 2AU "O3'" O3* O 0 1 N N N 5.590 10.549 0.232 -1.541 1.334 -0.132 "O3'" 2AU 9 2AU "C2'" C2* C 0 1 N N R 5.753 8.150 0.734 0.629 1.952 0.788 "C2'" 2AU 10 2AU "C1'" C1* C 0 1 N N R 6.065 7.701 -0.691 0.057 2.684 1.996 "C1'" 2AU 11 2AU N1 N1 N 0 1 N N N 6.128 6.242 -0.858 1.073 3.249 2.838 N1 2AU 12 2AU C2 C2 C 0 1 N N N 4.978 5.587 -1.263 1.477 4.598 2.699 C2 2AU 13 2AU O2 O2 O 0 1 N N N 3.928 6.165 -1.485 1.001 5.373 1.867 O2 2AU 14 2AU N3 N3 N 0 1 N N N 5.103 4.228 -1.400 2.478 5.014 3.587 N3 2AU 15 2AU C4 C4 C 0 1 N N N 6.233 3.472 -1.181 3.094 4.246 4.564 C4 2AU 16 2AU O4 O4 O 0 1 N N N 6.191 2.256 -1.363 3.969 4.656 5.320 O4 2AU 17 2AU C5 C5 C 0 1 N N N 7.377 4.220 -0.763 2.616 2.852 4.643 C5 2AU 18 2AU C6 C6 C 0 1 N N N 7.292 5.546 -0.619 1.662 2.441 3.804 C6 2AU 19 2AU "N2'" N2* N 0 1 N N N 4.314 8.279 0.894 0.826 2.817 -0.363 "N2'" 2AU 20 2AU H1P1 1H1P H 0 0 N N N 9.887 6.392 0.118 2.656 -1.831 5.333 H1P1 2AU 21 2AU "H5'" 1H5* H 0 1 N N N 9.618 8.389 0.003 1.131 -0.178 2.676 "H5'" 2AU 22 2AU "H5''" 2H5* H 0 0 N N N 9.366 9.742 1.166 0.072 -1.477 2.064 "H5''" 2AU 23 2AU "H4'" H4* H 0 1 N N N 7.957 10.255 -0.540 -1.841 0.157 2.052 "H4'" 2AU 24 2AU "H3'" H3* H 0 1 N N N 6.652 9.863 1.784 -0.000 -0.001 0.002 "H3'" 2AU 25 2AU "HO3'" H3T H 0 0 N Y N 5.404 11.188 0.910 -1.289 1.389 -1.066 "HO3'" 2AU 26 2AU "H2'" 1H2* H 0 1 N N N 6.092 7.468 1.528 1.591 1.494 1.051 "H2'" 2AU 27 2AU "H1'" H1* H 0 1 N N N 5.251 8.051 -1.342 -0.632 3.489 1.718 "H1'" 2AU 28 2AU H3 H3 H 0 1 N N N 4.285 3.732 -1.691 2.785 5.980 3.506 H3 2AU 29 2AU H5 H5 H 0 1 N N N 8.310 3.714 -0.564 3.051 2.192 5.383 H5 2AU 30 2AU H6 H6 H 0 1 N N N 8.169 6.092 -0.303 1.296 1.420 3.845 H6 2AU 31 2AU HA1 1HA H 0 1 N N N 4.004 9.122 0.454 1.265 3.705 -0.221 HA1 2AU 32 2AU "H2''" 2H2* H 0 0 N N N 4.088 8.309 1.868 0.344 2.598 -1.212 "H2''" 2AU 33 2AU OP2 O2P O 0 1 N Y N ? ? ? 0.451 -3.195 3.928 OP2 2AU 34 2AU H2P1 2H1P H 0 0 N Y N ? ? ? 0.804 -4.033 4.296 H2P1 2AU 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2AU OP3 P DOUB N N 1 2AU P OP1 SING N N 2 2AU P "O5'" SING N N 3 2AU OP1 H1P1 SING N N 4 2AU "O5'" "C5'" SING N N 5 2AU "C5'" "C4'" SING N N 6 2AU "C5'" "H5'" SING N N 7 2AU "C5'" "H5''" SING N N 8 2AU "C4'" "O4'" SING N N 9 2AU "C4'" "C3'" SING N N 10 2AU "C4'" "H4'" SING N N 11 2AU "O4'" "C1'" SING N N 12 2AU "C3'" "O3'" SING N N 13 2AU "C3'" "C2'" SING N N 14 2AU "C3'" "H3'" SING N N 15 2AU "O3'" "HO3'" SING N N 16 2AU "C2'" "C1'" SING N N 17 2AU "C2'" "N2'" SING N N 18 2AU "C2'" "H2'" SING N N 19 2AU "C1'" N1 SING N N 20 2AU "C1'" "H1'" SING N N 21 2AU N1 C2 SING N N 22 2AU N1 C6 SING N N 23 2AU C2 O2 DOUB N N 24 2AU C2 N3 SING N N 25 2AU N3 C4 SING N N 26 2AU N3 H3 SING N N 27 2AU C4 O4 DOUB N N 28 2AU C4 C5 SING N N 29 2AU C5 C6 DOUB N N 30 2AU C5 H5 SING N N 31 2AU C6 H6 SING N N 32 2AU "N2'" HA1 SING N N 33 2AU "N2'" "H2''" SING N N 34 2AU OP2 P SING N N 35 2AU OP2 H2P1 SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2AU SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1)C2OC(C(O)C2N)COP(=O)(O)O" 2AU SMILES_CANONICAL CACTVS 3.341 "N[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=CC(=O)NC2=O" 2AU SMILES CACTVS 3.341 "N[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=CC(=O)NC2=O" 2AU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)N" 2AU SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)N" 2AU InChI InChI 1.03 "InChI=1S/C9H14N3O8P/c10-6-7(14)4(3-19-21(16,17)18)20-8(6)12-2-1-5(13)11-9(12)15/h1-2,4,6-8,14H,3,10H2,(H,11,13,15)(H2,16,17,18)/t4-,6-,7-,8-/m1/s1" 2AU InChIKey InChI 1.03 OWNKJJAVEHMKCW-XVFCMESISA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2AU "SYSTEMATIC NAME" ACDLabs 10.04 ;2'-amino-2'-deoxyuridine 5'-(dihydrogen phosphate) ; 2AU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-4-amino-5-(2,4-dioxopyrimidin-1-yl)-3-hydroxy-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2AU "Create component" 2005-04-26 EBI 2AU "Modify descriptor" 2011-06-04 RCSB #