data_2BA # _chem_comp.id 2BA _chem_comp.name ;(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N10 O12 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-01-29 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 658.412 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2BA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3C1Y _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2BA P P P 0 1 N N R 67.613 14.395 -38.053 0.737 2.301 0.576 P 2BA 1 2BA O1P O1P O 0 1 N N N 69.033 14.775 -37.740 0.935 2.627 -0.854 O1P 2BA 2 2BA O2P O2P O 0 1 N N N 67.228 13.142 -37.288 0.464 3.656 1.403 O2P 2BA 3 2BA "O5'" O5* O 0 1 N N N 66.604 15.574 -37.607 -0.526 1.315 0.732 "O5'" 2BA 4 2BA "C5'" C5* C 0 1 N N N 65.225 15.369 -37.807 -1.877 1.736 0.522 "C5'" 2BA 5 2BA "C4'" C4* C 0 1 N N R 64.318 16.584 -37.798 -2.831 0.719 1.149 "C4'" 2BA 6 2BA "O4'" O4* O 0 1 N N N 64.680 17.458 -36.743 -4.173 1.207 1.079 "O4'" 2BA 7 2BA "C3'" C3* C 0 1 N N S 64.388 17.405 -39.041 -2.776 -0.602 0.366 "C3'" 2BA 8 2BA "O3'" O3* O 0 1 N N N 63.959 16.629 -40.177 -2.059 -1.589 1.112 "O3'" 2BA 9 2BA "C2'" C2* C 0 1 N N R 63.714 18.662 -38.504 -4.247 -1.025 0.197 "C2'" 2BA 10 2BA "O2'" O2* O 0 1 N N N 62.276 18.574 -38.502 -4.497 -2.245 0.897 "O2'" 2BA 11 2BA "C1'" C1* C 0 1 N N R 64.303 18.801 -37.089 -5.063 0.121 0.813 "C1'" 2BA 12 2BA N9 N9 N 0 1 Y N N 65.756 19.727 -37.179 -6.101 0.551 -0.128 N9 2BA 13 2BA C8 C8 C 0 1 Y N N 67.133 19.526 -37.063 -6.009 1.582 -1.015 C8 2BA 14 2BA N7 N7 N 0 1 Y N N 67.779 20.645 -37.216 -7.115 1.684 -1.694 N7 2BA 15 2BA C5 C5 C 0 1 Y N N 66.891 21.650 -37.425 -7.984 0.728 -1.287 C5 2BA 16 2BA C6 C6 C 0 1 Y N N 66.979 23.064 -37.651 -9.291 0.362 -1.649 C6 2BA 17 2BA N6 N6 N 0 1 N N N 68.212 23.671 -37.681 -9.972 1.052 -2.637 N6 2BA 18 2BA N1 N1 N 0 1 Y N N 65.827 23.793 -37.828 -9.859 -0.662 -1.021 N1 2BA 19 2BA C2 C2 C 0 1 Y N N 64.594 23.218 -37.801 -9.218 -1.327 -0.078 C2 2BA 20 2BA N3 N3 N 0 1 Y N N 64.489 21.887 -37.592 -7.993 -1.020 0.294 N3 2BA 21 2BA C4 C4 C 0 1 Y N N 65.576 21.078 -37.408 -7.342 -0.014 -0.281 C4 2BA 22 2BA P1 1P P 0 1 N N R 64.450 16.884 -41.720 -0.718 -2.295 0.569 P1 2BA 23 2BA O1P1 1O1P O 0 0 N N N 64.545 18.381 -41.839 -0.830 -2.512 -0.891 O1P1 2BA 24 2BA O2P1 1O2P O 0 0 N N N 63.434 16.316 -42.694 -0.521 -3.712 1.308 O2P1 2BA 25 2BA "O5'1" 1O5* O 0 0 N N N 65.844 16.189 -42.028 0.549 -1.350 0.875 "O5'1" 2BA 26 2BA "C5'1" 1C5* C 0 0 N N N 65.930 14.797 -41.967 1.898 -1.750 0.627 "C5'1" 2BA 27 2BA "C4'1" 1C4* C 0 0 N N R 67.264 14.145 -41.801 2.853 -0.717 1.225 "C4'1" 2BA 28 2BA "O4'1" 1O4* O 0 0 N N N 68.150 14.646 -42.813 4.198 -1.198 1.150 "O4'1" 2BA 29 2BA "C3'1" 1C3* C 0 0 N N S 67.891 14.431 -40.439 2.783 0.591 0.421 "C3'1" 2BA 30 2BA "O3'1" 1O3* O 0 0 N N N 67.432 13.718 -39.334 2.056 1.580 1.150 "O3'1" 2BA 31 2BA "C2'1" 1C2* C 0 0 N N R 69.352 14.310 -40.845 4.250 1.026 0.245 "C2'1" 2BA 32 2BA "O2'1" 1O2* O 0 0 N N N 69.805 12.971 -40.718 4.493 2.248 0.945 "O2'1" 2BA 33 2BA "C1'1" 1C1* C 0 0 N N R 69.445 14.768 -42.289 5.080 -0.113 0.854 "C1'1" 2BA 34 2BA N91 1N9 N 0 1 Y N N 70.085 16.099 -42.272 6.099 -0.550 -0.104 N91 2BA 35 2BA C81 1C8 C 0 1 Y N N 69.380 17.309 -42.405 5.990 -1.589 -0.979 C81 2BA 36 2BA N71 1N7 N 0 1 Y N N 70.191 18.334 -42.343 7.081 -1.696 -1.680 N71 2BA 37 2BA C51 1C5 C 0 1 Y N N 71.456 17.876 -42.170 7.957 -0.734 -1.301 C51 2BA 38 2BA C61 1C6 C 0 1 Y N N 72.757 18.472 -42.025 9.255 -0.369 -1.694 C61 2BA 39 2BA N61 1N6 N 0 1 N N N 72.902 19.846 -42.042 9.916 -1.068 -2.690 N61 2BA 40 2BA N11 1N1 N 0 1 Y N N 73.850 17.654 -41.864 9.834 0.662 -1.088 N11 2BA 41 2BA C21 1C2 C 0 1 Y N N 73.752 16.291 -41.835 9.211 1.335 -0.138 C21 2BA 42 2BA N31 1N3 N 0 1 Y N N 72.540 15.705 -41.964 7.995 1.029 0.263 N31 2BA 43 2BA C41 1C4 C 0 1 Y N N 71.396 16.436 -42.127 7.334 0.017 -0.289 C41 2BA 44 2BA "H5'" H5* H 0 1 N N N 65.115 14.898 -38.795 -2.030 2.711 0.986 "H5'" 2BA 45 2BA "H5'A" H5*A H 0 0 N N N 64.902 14.771 -36.942 -2.074 1.808 -0.548 "H5'A" 2BA 46 2BA "H4'" H4* H 0 1 N N N 63.304 16.172 -37.691 -2.556 0.545 2.190 "H4'" 2BA 47 2BA "H3'" H3* H 0 1 N N N 65.328 17.721 -39.516 -2.311 -0.447 -0.608 "H3'" 2BA 48 2BA "H2'" H2* H 0 1 N N N 63.906 19.543 -39.134 -4.489 -1.138 -0.860 "H2'" 2BA 49 2BA "HO2'" HO2* H 0 0 N N N 61.961 18.555 -37.606 -5.409 -2.560 0.825 "HO2'" 2BA 50 2BA "H1'" H1* H 0 1 N N N 63.605 19.273 -36.382 -5.525 -0.213 1.742 "H1'" 2BA 51 2BA H8 H8 H 0 1 N N N 67.599 18.571 -36.872 -5.146 2.220 -1.136 H8 2BA 52 2BA HN6 HN6 H 0 1 N N N 68.488 23.818 -38.631 -9.546 1.798 -3.089 HN6 2BA 53 2BA HN6A HN6A H 0 0 N N N 68.162 24.551 -37.208 -10.874 0.790 -2.878 HN6A 2BA 54 2BA H2 H2 H 0 1 N N N 63.708 23.819 -37.945 -9.717 -2.152 0.408 H2 2BA 55 2BA "HC5'" HC5* H 0 0 N N N 65.328 14.490 -41.099 2.080 -2.721 1.086 "HC5'" 2BA 56 2BA HC5A HC5A H 0 0 N N N 65.599 14.469 -42.964 2.065 -1.819 -0.448 HC5A 2BA 57 2BA "HC4'" HC4* H 0 0 N N N 67.113 13.059 -41.886 2.589 -0.526 2.266 "HC4'" 2BA 58 2BA "HC3'" HC3* H 0 0 N N N 67.618 15.396 -39.986 2.321 0.414 -0.551 "HC3'" 2BA 59 2BA "HC2'" HC2* H 0 0 N N N 69.988 14.926 -40.193 4.485 1.143 -0.813 "HC2'" 2BA 60 2BA HO2A HO2A H 0 0 N N N 69.906 12.587 -41.581 5.402 2.570 0.869 HO2A 2BA 61 2BA "HC1'" HC1* H 0 0 N N N 70.080 14.178 -42.967 5.561 0.231 1.770 "HC1'" 2BA 62 2BA HC8 HC8 H 0 1 N N N 68.311 17.382 -42.540 5.126 -2.230 -1.075 HC8 2BA 63 2BA H1N6 H1N6 H 0 0 N N N 72.937 20.190 -41.104 9.483 -1.819 -3.125 H1N6 2BA 64 2BA H1NA H1NA H 0 0 N N N 73.749 20.086 -42.516 10.813 -0.806 -2.952 H1NA 2BA 65 2BA HC2 HC2 H 0 1 N N N 74.637 15.685 -41.710 9.719 2.166 0.329 HC2 2BA 66 2BA H2P H2P H 0 1 N N N 67.148 12.414 -37.892 -0.318 4.144 1.110 H2P 2BA 67 2BA H2OP H2OP H 0 0 N N N 62.602 16.197 -42.251 0.269 -4.194 1.029 H2OP 2BA 68 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BA P O1P DOUB N N 1 2BA P O2P SING N N 2 2BA P "O5'" SING N N 3 2BA P "O3'1" SING N N 4 2BA "O5'" "C5'" SING N N 5 2BA "C5'" "C4'" SING N N 6 2BA "C4'" "O4'" SING N N 7 2BA "C4'" "C3'" SING N N 8 2BA "O4'" "C1'" SING N N 9 2BA "C3'" "O3'" SING N N 10 2BA "C3'" "C2'" SING N N 11 2BA "O3'" P1 SING N N 12 2BA "C2'" "O2'" SING N N 13 2BA "C2'" "C1'" SING N N 14 2BA "C1'" N9 SING N N 15 2BA N9 C8 SING Y N 16 2BA N9 C4 SING Y N 17 2BA C8 N7 DOUB Y N 18 2BA N7 C5 SING Y N 19 2BA C5 C6 DOUB Y N 20 2BA C5 C4 SING Y N 21 2BA C6 N6 SING N N 22 2BA C6 N1 SING Y N 23 2BA N1 C2 DOUB Y N 24 2BA C2 N3 SING Y N 25 2BA N3 C4 DOUB Y N 26 2BA P1 O1P1 DOUB N N 27 2BA P1 O2P1 SING N N 28 2BA P1 "O5'1" SING N N 29 2BA "O5'1" "C5'1" SING N N 30 2BA "C5'1" "C4'1" SING N N 31 2BA "C4'1" "O4'1" SING N N 32 2BA "C4'1" "C3'1" SING N N 33 2BA "O4'1" "C1'1" SING N N 34 2BA "C3'1" "O3'1" SING N N 35 2BA "C3'1" "C2'1" SING N N 36 2BA "C2'1" "O2'1" SING N N 37 2BA "C2'1" "C1'1" SING N N 38 2BA "C1'1" N91 SING N N 39 2BA N91 C81 SING Y N 40 2BA N91 C41 SING Y N 41 2BA C81 N71 DOUB Y N 42 2BA N71 C51 SING Y N 43 2BA C51 C61 DOUB Y N 44 2BA C51 C41 SING Y N 45 2BA C61 N61 SING N N 46 2BA C61 N11 SING Y N 47 2BA N11 C21 DOUB Y N 48 2BA C21 N31 SING Y N 49 2BA N31 C41 DOUB Y N 50 2BA "C5'" "H5'" SING N N 51 2BA "C5'" "H5'A" SING N N 52 2BA "C4'" "H4'" SING N N 53 2BA "C3'" "H3'" SING N N 54 2BA "C2'" "H2'" SING N N 55 2BA "O2'" "HO2'" SING N N 56 2BA "C1'" "H1'" SING N N 57 2BA C8 H8 SING N N 58 2BA N6 HN6 SING N N 59 2BA N6 HN6A SING N N 60 2BA C2 H2 SING N N 61 2BA "C5'1" "HC5'" SING N N 62 2BA "C5'1" HC5A SING N N 63 2BA "C4'1" "HC4'" SING N N 64 2BA "C3'1" "HC3'" SING N N 65 2BA "C2'1" "HC2'" SING N N 66 2BA "O2'1" HO2A SING N N 67 2BA "C1'1" "HC1'" SING N N 68 2BA C81 HC8 SING N N 69 2BA N61 H1N6 SING N N 70 2BA N61 H1NA SING N N 71 2BA C21 HC2 SING N N 72 2BA O2P H2P SING N N 73 2BA O2P1 H2OP SING N N 74 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2BA SMILES ACDLabs 10.04 "O=P5(OCC7OC(n1c2ncnc(N)c2nc1)C(O)C7OP(=O)(O)OCC6OC(n3c4ncnc(N)c4nc3)C(O)C6O5)O" 2BA SMILES_CANONICAL CACTVS 3.341 "Nc1ncnc2n(cnc12)[C@@H]3O[C@@H]4CO[P@](O)(=O)O[C@H]5[C@@H](O)[C@@H](O[C@@H]5CO[P@](O)(=O)O[C@H]4[C@H]3O)n6cnc7c(N)ncnc67" 2BA SMILES CACTVS 3.341 "Nc1ncnc2n(cnc12)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](O)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3O)n6cnc7c(N)ncnc67" 2BA SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)CO[P@](=O)(O[C@@H]5[C@@H](CO[P@](=O)(O4)O)O[C@H]([C@@H]5O)n6cnc7c6ncnc7N)O)O)N" 2BA SMILES "OpenEye OEToolkits" 1.5.0 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5O)n6cnc7c6ncnc7N)O)O)N" 2BA InChI InChI 1.03 "InChI=1S/C20H24N10O12P2/c21-15-9-17(25-3-23-15)29(5-27-9)19-11(31)13-7(39-19)1-37-43(33,34)42-14-8(2-38-44(35,36)41-13)40-20(12(14)32)30-6-28-10-16(22)24-4-26-18(10)30/h3-8,11-14,19-20,31-32H,1-2H2,(H,33,34)(H,35,36)(H2,21,23,25)(H2,22,24,26)/t7-,8-,11-,12-,13-,14-,19-,20-/m1/s1" 2BA InChIKey InChI 1.03 PDXMFTWFFKBFIN-XPWFQUROSA-N # _pdbx_chem_comp_identifier.comp_id 2BA _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2BA "Create component" 2008-01-29 PDBJ 2BA "Modify aromatic_flag" 2011-06-04 RCSB 2BA "Modify descriptor" 2011-06-04 RCSB 2BA "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2BA _pdbx_chem_comp_synonyms.name "bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##