data_2BO # _chem_comp.id 2BO _chem_comp.name "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-threonine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H19 N2 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-09-18 _chem_comp.pdbx_modified_date 2013-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 350.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2BO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4LNL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2BO N1 N1 N 0 1 Y N N 15.852 20.561 27.421 0.853 -3.659 0.412 N1 2BO 1 2BO C2 C2 C 0 1 Y N N 17.051 21.160 26.929 -0.413 -3.832 0.086 C2 2BO 2 2BO C2A C2A C 0 1 N N N 18.341 20.428 27.297 -1.043 -5.192 0.240 C2A 2BO 3 2BO C3 C3 C 0 1 Y N N 16.870 22.403 26.129 -1.171 -2.774 -0.397 C3 2BO 4 2BO O3 O3 O 0 1 N N N 18.041 22.914 25.694 -2.476 -2.957 -0.730 O3 2BO 5 2BO C4 C4 C 0 1 Y N N 15.517 22.964 25.883 -0.576 -1.525 -0.534 C4 2BO 6 2BO C4A C4A C 0 1 N N N 15.357 24.218 25.089 -1.362 -0.349 -1.054 C4A 2BO 7 2BO C5 C5 C 0 1 Y N N 14.296 22.163 26.510 0.757 -1.387 -0.181 C5 2BO 8 2BO C5A C5A C 0 1 N N N 12.828 22.695 26.321 1.446 -0.053 -0.311 C5A 2BO 9 2BO C6 C6 C 0 1 Y N N 14.515 20.998 27.250 1.446 -2.487 0.293 C6 2BO 10 2BO P P P 0 1 N N N 11.455 23.873 24.415 3.840 1.057 0.110 P 2BO 11 2BO O1P O1P O 0 1 N N N 10.950 23.288 23.099 3.894 1.651 -1.245 O1P 2BO 12 2BO O2P O2P O 0 1 N N N 12.249 25.076 24.163 5.304 0.531 0.524 O2P 2BO 13 2BO O3P O3P O 0 1 N N N 10.411 24.038 25.467 3.352 2.172 1.164 O3P 2BO 14 2BO O4P O4P O 0 1 N N N 12.458 22.728 25.000 2.805 -0.176 0.115 O4P 2BO 15 2BO N N N 0 1 N N N 16.420 24.913 24.557 -1.993 0.354 0.071 N 2BO 16 2BO CA CA C 0 1 N N S 16.597 26.418 24.452 -2.870 1.432 -0.407 CA 2BO 17 2BO CB CB C 0 1 N N R 16.507 27.066 25.858 -3.952 1.711 0.638 CB 2BO 18 2BO OB OB O 0 1 N N N 15.201 26.830 26.401 -3.338 2.128 1.859 OB 2BO 19 2BO C C C 0 1 N N N 17.938 26.708 23.806 -2.055 2.680 -0.633 C 2BO 20 2BO O O O 0 1 N N N 18.956 26.113 24.153 -2.651 3.799 -1.073 O 2BO 21 2BO OT OT O 0 1 N N N 18.047 27.556 22.917 -0.867 2.672 -0.417 OT 2BO 22 2BO CG CG C 0 1 N N N 16.501 28.656 25.907 -4.764 0.438 0.884 CG 2BO 23 2BO H1 H1 H 0 1 N N N 18.100 19.538 27.897 -1.475 -5.281 1.237 H1 2BO 24 2BO H2 H2 H 0 1 N N N 18.862 20.120 26.379 -1.827 -5.316 -0.507 H2 2BO 25 2BO H3 H3 H 0 1 N N N 18.990 21.099 27.880 -0.284 -5.962 0.102 H3 2BO 26 2BO H4 H4 H 0 1 N N N 18.757 22.363 25.989 -3.093 -2.805 -0.002 H4 2BO 27 2BO H5 H5 H 0 1 N N N 14.831 24.926 25.746 -0.692 0.333 -1.579 H5 2BO 28 2BO H6 H6 H 0 1 N N N 14.710 23.957 24.238 -2.132 -0.701 -1.740 H6 2BO 29 2BO H7 H7 H 0 1 N N N 12.764 23.713 26.733 1.419 0.270 -1.352 H7 2BO 30 2BO H8 H8 H 0 1 N N N 12.138 22.034 26.866 0.936 0.682 0.311 H8 2BO 31 2BO H9 H9 H 0 1 N N N 13.690 20.448 27.678 2.485 -2.386 0.571 H9 2BO 32 2BO H10 H10 H 0 1 N N N 12.285 25.242 23.228 5.980 1.222 0.543 H10 2BO 33 2BO H11 H11 H 0 1 N N N 9.573 23.741 25.132 3.293 1.852 2.075 H11 2BO 34 2BO H12 H12 H 0 1 N N N 16.491 24.584 23.615 -1.299 0.710 0.710 H12 2BO 35 2BO H14 H14 H 0 1 N N N 15.796 26.831 23.821 -3.339 1.130 -1.344 H14 2BO 36 2BO H15 H15 H 0 1 N N N 17.302 26.676 26.510 -4.612 2.499 0.276 H15 2BO 37 2BO H16 H16 H 0 1 N N N 15.140 27.225 27.263 -2.735 1.474 2.240 H16 2BO 38 2BO H17 H17 H 0 1 N N N 19.695 26.428 23.646 -2.087 4.574 -1.202 H17 2BO 39 2BO H18 H18 H 0 1 N N N 16.434 28.991 26.953 -4.094 -0.367 1.189 H18 2BO 40 2BO H19 H19 H 0 1 N N N 17.429 29.040 25.458 -5.495 0.619 1.672 H19 2BO 41 2BO H20 H20 H 0 1 N N N 15.636 29.037 25.344 -5.280 0.153 -0.032 H20 2BO 42 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2BO OT C DOUB N N 1 2BO O1P P DOUB N N 2 2BO C O SING N N 3 2BO C CA SING N N 4 2BO O2P P SING N N 5 2BO P O4P SING N N 6 2BO P O3P SING N N 7 2BO CA N SING N N 8 2BO CA CB SING N N 9 2BO N C4A SING N N 10 2BO O4P C5A SING N N 11 2BO C4A C4 SING N N 12 2BO O3 C3 SING N N 13 2BO CB CG SING N N 14 2BO CB OB SING N N 15 2BO C4 C3 DOUB Y N 16 2BO C4 C5 SING Y N 17 2BO C3 C2 SING Y N 18 2BO C5A C5 SING N N 19 2BO C5 C6 DOUB Y N 20 2BO C2 C2A SING N N 21 2BO C2 N1 DOUB Y N 22 2BO C6 N1 SING Y N 23 2BO C2A H1 SING N N 24 2BO C2A H2 SING N N 25 2BO C2A H3 SING N N 26 2BO O3 H4 SING N N 27 2BO C4A H5 SING N N 28 2BO C4A H6 SING N N 29 2BO C5A H7 SING N N 30 2BO C5A H8 SING N N 31 2BO C6 H9 SING N N 32 2BO O2P H10 SING N N 33 2BO O3P H11 SING N N 34 2BO N H12 SING N N 35 2BO CA H14 SING N N 36 2BO CB H15 SING N N 37 2BO OB H16 SING N N 38 2BO O H17 SING N N 39 2BO CG H18 SING N N 40 2BO CG H19 SING N N 41 2BO CG H20 SING N N 42 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2BO SMILES ACDLabs 12.01 "O=C(O)C(NCc1c(cnc(c1O)C)COP(=O)(O)O)C(O)C" 2BO InChI InChI 1.03 "InChI=1S/C12H19N2O8P/c1-6-11(16)9(4-14-10(7(2)15)12(17)18)8(3-13-6)5-22-23(19,20)21/h3,7,10,14-16H,4-5H2,1-2H3,(H,17,18)(H2,19,20,21)/t7-,10+/m1/s1" 2BO InChIKey InChI 1.03 IZWQBQLGLAKRMN-XCBNKYQSSA-N 2BO SMILES_CANONICAL CACTVS 3.385 "C[C@@H](O)[C@H](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" 2BO SMILES CACTVS 3.385 "C[CH](O)[CH](NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" 2BO SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(c(c(cn1)COP(=O)(O)O)CN[C@@H]([C@@H](C)O)C(=O)O)O" 2BO SMILES "OpenEye OEToolkits" 1.7.6 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(C(C)O)C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2BO "SYSTEMATIC NAME" ACDLabs 12.01 "N-({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)-L-threonine" 2BO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R)-2-[[2-methyl-3-oxidanyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]-3-oxidanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2BO "Create component" 2013-09-18 RCSB 2BO "Initial release" 2013-11-06 RCSB #