data_2DG # _chem_comp.id 2DG _chem_comp.name 2-deoxy-alpha-D-galactopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H12 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-deoxy-alpha-D-lyxo-hexopyranose; 2-deoxy-alpha-D-galactose; 2-deoxy-D-galactose; 2-deoxy-galactose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-10-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 164.156 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2DG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JZ3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 2DG 2-deoxy-alpha-D-lyxo-hexopyranose PDB ? 2 2DG 2-deoxy-alpha-D-galactose PDB ? 3 2DG 2-deoxy-D-galactose PDB ? 4 2DG 2-deoxy-galactose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2DG C1 C1 C 0 1 N N S N N N -12.051 20.328 -25.776 -1.615 0.599 -0.265 C1 2DG 1 2DG C2 C2 C 0 1 N N N N N N -12.014 21.658 -25.021 -0.872 0.612 -1.603 C2 2DG 2 2DG C3 C3 C 0 1 N N R N N N -13.147 22.604 -25.439 0.153 -0.526 -1.616 C3 2DG 3 2DG C4 C4 C 0 1 N N R N N N -13.187 22.800 -26.946 1.042 -0.397 -0.374 C4 2DG 4 2DG C5 C5 C 0 1 N N R N N N -13.246 21.396 -27.629 0.154 -0.335 0.870 C5 2DG 5 2DG C6 C6 C 0 1 N N N N N N -13.054 21.578 -29.153 1.034 -0.241 2.119 C6 2DG 6 2DG O1 O1 O 0 1 N Y N N N N -13.163 19.474 -25.337 -2.260 -0.664 -0.094 O1 2DG 7 2DG O3 O3 O 0 1 N N N N N N -13.009 23.844 -24.732 0.955 -0.436 -2.795 O3 2DG 8 2DG O4 O4 O 0 1 N N N N N N -12.018 23.509 -27.343 1.824 0.795 -0.468 O4 2DG 9 2DG O5 O5 O 0 1 N N N N N N -12.166 20.525 -27.225 -0.693 0.809 0.801 O5 2DG 10 2DG O6 O6 O 0 1 N N N N N N -14.115 22.428 -29.685 0.206 -0.187 3.282 O6 2DG 11 2DG H1 H1 H 0 1 N N N N N N -11.083 19.824 -25.542 -2.363 1.391 -0.259 H1 2DG 12 2DG H2 H21 H 0 1 N N N N N N -12.015 21.493 -23.918 -1.583 0.471 -2.417 H2 2DG 13 2DG H22 H22 H 0 1 N N N N N N -11.019 22.151 -25.127 -0.359 1.566 -1.726 H22 2DG 14 2DG H3 H3 H 0 1 N N N N N N -14.126 22.147 -25.165 -0.364 -1.485 -1.598 H3 2DG 15 2DG H4 H4 H 0 1 N N N N N N -14.084 23.387 -27.251 1.702 -1.262 -0.306 H4 2DG 16 2DG H5 H5 H 0 1 N N N N N N -14.226 20.950 -27.339 -0.456 -1.236 0.925 H5 2DG 17 2DG H61 H61 H 0 1 N N N N N N -12.039 21.965 -29.405 1.646 0.658 2.065 H61 2DG 18 2DG H62 H62 H 0 1 N N N N N N -12.990 20.601 -29.687 1.681 -1.117 2.174 H62 2DG 19 2DG HO1 HO1 H 0 1 N Y N N N N -13.186 18.648 -25.805 -2.720 -0.630 0.755 HO1 2DG 20 2DG HO3 HO3 H 0 1 N Y N N N N -13.710 24.429 -24.990 0.353 -0.510 -3.548 HO3 2DG 21 2DG HO4 HO4 H 0 1 N Y N N N N -12.043 23.631 -28.284 2.362 0.714 -1.267 HO4 2DG 22 2DG HO6 HO6 H 0 1 N N N N N N -13.997 22.539 -30.621 0.799 -0.128 4.044 HO6 2DG 23 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2DG C1 C2 SING N N 1 2DG C1 O1 SING N N 2 2DG C1 O5 SING N N 3 2DG C1 H1 SING N N 4 2DG C2 C3 SING N N 5 2DG C2 H2 SING N N 6 2DG C2 H22 SING N N 7 2DG C3 C4 SING N N 8 2DG C3 O3 SING N N 9 2DG C3 H3 SING N N 10 2DG C4 C5 SING N N 11 2DG C4 O4 SING N N 12 2DG C4 H4 SING N N 13 2DG C5 C6 SING N N 14 2DG C5 O5 SING N N 15 2DG C5 H5 SING N N 16 2DG C6 O6 SING N N 17 2DG C6 H61 SING N N 18 2DG C6 H62 SING N N 19 2DG O1 HO1 SING N N 20 2DG O3 HO3 SING N N 21 2DG O4 HO4 SING N N 22 2DG O6 HO6 SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2DG SMILES ACDLabs 10.04 "OC1C(OC(O)CC1O)CO" 2DG SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](O)C[C@@H](O)[C@H]1O" 2DG SMILES CACTVS 3.341 "OC[CH]1O[CH](O)C[CH](O)[CH]1O" 2DG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H]([C@H]([C@H](O[C@@H]1O)CO)O)O" 2DG SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(C(OC1O)CO)O)O" 2DG InChI InChI 1.03 "InChI=1S/C6H12O5/c7-2-4-6(10)3(8)1-5(9)11-4/h3-10H,1-2H2/t3-,4-,5+,6-/m1/s1" 2DG InChIKey InChI 1.03 PMMURAAUARKVCB-ARQDHWQXSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2DG "SYSTEMATIC NAME" ACDLabs 10.04 2-deoxy-alpha-D-lyxo-hexopyranose 2DG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4R,5R,6R)-6-(hydroxymethyl)oxane-2,4,5-triol" # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support 2DG "CARBOHYDRATE ISOMER" D PDB ? 2DG "CARBOHYDRATE RING" pyranose PDB ? 2DG "CARBOHYDRATE ANOMER" alpha PDB ? 2DG "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2DG "Create component" 2001-10-02 RCSB 2DG "Modify descriptor" 2011-06-04 RCSB 2DG "Other modification" 2020-07-03 RCSB 2DG "Modify name" 2020-07-17 RCSB 2DG "Modify synonyms" 2020-07-17 RCSB 2DG "Modify linking type" 2020-07-17 RCSB 2DG "Modify atom id" 2020-07-17 RCSB 2DG "Modify component atom id" 2020-07-17 RCSB 2DG "Modify leaving atom flag" 2020-07-17 RCSB 2DG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 2DG _pdbx_chem_comp_pcm.modified_residue_id GLU _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Carbohydrate _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OE2 _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #