data_2DO # _chem_comp.id 2DO _chem_comp.name "(2S)-2-AMINOHEXANE-1,1-DIOL" _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H15 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-09-26 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 133.189 _chem_comp.one_letter_code X _chem_comp.three_letter_code 2DO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2DO N N N 0 1 N N N Y Y N 18.083 24.795 18.423 -0.698 -1.797 -0.163 N 2DO 1 2DO CA CA C 0 1 N N S Y N N 17.350 23.822 19.232 -0.748 -0.382 0.230 CA 2DO 2 2DO C C C 0 1 N N N Y N Y 15.847 23.837 18.916 -2.040 0.247 -0.294 C 2DO 3 2DO CB CB C 0 1 N N N N N N 17.670 24.091 20.708 0.455 0.354 -0.362 CB 2DO 4 2DO CG CG C 0 1 N N N N N N 19.076 23.958 21.211 1.743 -0.193 0.257 CG 2DO 5 2DO CD CD C 0 1 N N N N N N 19.819 22.763 20.721 2.947 0.543 -0.336 CD 2DO 6 2DO CE CE C 0 1 N N N N N N 19.302 21.427 21.170 4.234 -0.004 0.283 CE 2DO 7 2DO O O O 0 1 N N N Y N Y 15.291 25.110 19.228 -3.164 -0.440 0.259 O 2DO 8 2DO OXT OXT O 0 1 N Y N Y N Y 15.473 23.752 17.507 -2.088 1.624 0.088 OXT 2DO 9 2DO H H H 0 1 N N N Y Y N 18.957 24.401 18.138 -0.725 -1.819 -1.171 H 2DO 10 2DO H2 H2 H 0 1 N Y N Y Y N 18.250 25.620 18.963 0.209 -2.142 0.111 H2 2DO 11 2DO HA HCA H 0 1 N N N Y N N 17.673 22.799 18.988 -0.721 -0.306 1.317 HCA 2DO 12 2DO HC HC H 0 1 N N N Y N Y 15.496 22.964 19.486 -2.066 0.171 -1.381 HC 2DO 13 2DO HB2 HB2 H 0 1 N N N N N N 17.130 23.293 21.238 0.372 1.419 -0.146 HB2 2DO 14 2DO HB3 HB3 H 0 1 N N N N N N 17.377 25.134 20.897 0.478 0.203 -1.441 HB3 2DO 15 2DO HG2 HG2 H 0 1 N N N N N N 19.002 23.847 22.303 1.827 -1.258 0.040 HG2 2DO 16 2DO HG3 HG3 H 0 1 N N N N N N 19.631 24.850 20.885 1.720 -0.042 1.336 HG3 2DO 17 2DO HD2 HD2 H 0 1 N N N N N N 20.830 22.848 21.145 2.863 1.608 -0.119 HD2 2DO 18 2DO HD3 HD3 H 0 1 N N N N N N 19.773 22.778 19.622 2.969 0.393 -1.415 HD3 2DO 19 2DO HE1 HE1 H 0 1 N N N N N N 18.332 21.559 21.672 5.092 0.521 -0.139 HE1 2DO 20 2DO HE2 HE2 H 0 1 N N N N N N 20.019 20.973 21.870 4.211 0.147 1.363 HE2 2DO 21 2DO HE3 HE3 H 0 1 N N N N N N 19.176 20.770 20.297 4.318 -1.069 0.067 HE3 2DO 22 2DO HO HO H 0 1 N N N Y N Y 15.167 25.180 20.167 -3.955 -0.013 -0.096 HO 2DO 23 2DO HXT HXT H 0 1 N Y N Y N Y 14.526 23.734 17.431 -2.063 1.646 1.055 HXT 2DO 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2DO N CA SING N N 1 2DO N H SING N N 2 2DO N H2 SING N N 3 2DO CA C SING N N 4 2DO CA CB SING N N 5 2DO CA HA SING N N 6 2DO C O SING N N 7 2DO C OXT SING N N 8 2DO C HC SING N N 9 2DO CB CG SING N N 10 2DO CB HB2 SING N N 11 2DO CB HB3 SING N N 12 2DO CG CD SING N N 13 2DO CG HG2 SING N N 14 2DO CG HG3 SING N N 15 2DO CD CE SING N N 16 2DO CD HD2 SING N N 17 2DO CD HD3 SING N N 18 2DO CE HE1 SING N N 19 2DO CE HE2 SING N N 20 2DO CE HE3 SING N N 21 2DO O HO SING N N 22 2DO OXT HXT SING N N 23 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2DO SMILES ACDLabs 10.04 "OC(O)C(N)CCCC" 2DO SMILES_CANONICAL CACTVS 3.341 "CCCC[C@H](N)C(O)O" 2DO SMILES CACTVS 3.341 "CCCC[CH](N)C(O)O" 2DO SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCC[C@@H](C(O)O)N" 2DO SMILES "OpenEye OEToolkits" 1.5.0 "CCCCC(C(O)O)N" 2DO InChI InChI 1.03 "InChI=1S/C6H15NO2/c1-2-3-4-5(7)6(8)9/h5-6,8-9H,2-4,7H2,1H3/t5-/m0/s1" 2DO InChIKey InChI 1.03 SUCLLBDDWGZXQQ-YFKPBYRVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2DO "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-aminohexane-1,1-diol" 2DO "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-aminohexane-1,1-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2DO "Create component" 2005-09-26 RCSB 2DO "Modify descriptor" 2011-06-04 RCSB 2DO "Modify backbone" 2023-11-03 PDBE 2DO "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 2DO _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #