data_2EL # _chem_comp.id 2EL _chem_comp.name ;(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[2-(2-hydroxyethoxy)ethyl]sulfanyl}methyl)pyrrolidin-3- ol ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H25 N5 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms DIETGLYCOL-THIO-DADME-IMMUCILLIN-A _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-05-09 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 367.466 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2EL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4F2P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2EL OAY OAY O 0 1 N N N -4.470 -7.900 17.587 -9.321 -0.986 -1.702 OAY 2EL 1 2EL CAX CAX C 0 1 N N N -3.088 -7.614 17.553 -9.447 -0.874 -0.283 CAX 2EL 2 2EL CAW CAW C 0 1 N N N -3.017 -6.195 17.037 -8.128 -1.276 0.380 CAW 2EL 3 2EL OAV OAV O 0 1 N N N -2.748 -5.344 18.182 -7.108 -0.344 0.016 OAV 2EL 4 2EL CAU CAU C 0 1 N N N -3.023 -3.981 17.887 -5.829 -0.630 0.585 CAU 2EL 5 2EL CAI CAI C 0 1 N N N -4.471 -3.842 18.223 -4.821 0.427 0.130 CAI 2EL 6 2EL SAH SAH S 0 1 N N N -5.055 -2.149 17.777 -3.197 0.064 0.853 SAH 2EL 7 2EL CAG CAG C 0 1 N N N -4.891 -1.295 19.363 -2.155 1.403 0.209 CAG 2EL 8 2EL CAF CAF C 0 1 N N S -6.085 -1.698 20.309 -0.729 1.237 0.737 CAF 2EL 9 2EL CAE CAE C 0 1 N N N -5.896 -1.027 21.645 -0.086 -0.040 0.153 CAE 2EL 10 2EL CAB CAB C 0 1 N N R -7.489 -1.237 19.855 0.163 2.395 0.243 CAB 2EL 11 2EL OAA OAA O 0 1 N N N -8.577 -1.968 20.450 0.736 3.088 1.354 OAA 2EL 12 2EL CAC CAC C 0 1 N N N -7.541 0.246 20.348 1.269 1.720 -0.597 CAC 2EL 13 2EL NAD NAD N 0 1 N N N -6.945 0.052 21.710 1.334 0.328 -0.082 NAD 2EL 14 2EL CAJ CAJ C 0 1 N N N -6.541 1.260 22.488 1.954 -0.569 -1.065 CAJ 2EL 15 2EL CAK CAK C 0 1 Y N N -5.248 2.002 22.085 3.442 -0.327 -1.097 CAK 2EL 16 2EL CAN CAN C 0 1 Y N N -4.100 2.023 22.796 4.114 0.406 -2.004 CAN 2EL 17 2EL NAO NAO N 0 1 Y N N -3.223 2.818 22.156 5.446 0.399 -1.710 NAO 2EL 18 2EL C5 C5 C 0 1 Y N N -3.852 3.341 21.059 5.671 -0.356 -0.583 C5 2EL 19 2EL C6 C6 C 0 1 Y N N -5.116 2.844 21.033 4.424 -0.838 -0.147 C6 2EL 20 2EL N1 N1 N 0 1 Y N N -6.037 3.177 20.061 4.369 -1.607 0.944 N1 2EL 21 2EL C2 C2 C 0 1 Y N N -5.557 4.031 19.066 5.467 -1.909 1.602 C2 2EL 22 2EL N3 N3 N 0 1 Y N N -4.276 4.532 19.089 6.658 -1.477 1.227 N3 2EL 23 2EL C4 C4 C 0 1 Y N N -3.440 4.219 20.082 6.807 -0.703 0.156 C4 2EL 24 2EL NAR NAR N 0 1 N N N -2.203 4.721 20.091 8.062 -0.258 -0.226 NAR 2EL 25 2EL H1 H1 H 0 1 N N N -4.603 -8.785 17.904 -10.121 -0.746 -2.189 H1 2EL 26 2EL H2 H2 H 0 1 N N N -2.563 -8.303 16.875 -9.686 0.157 -0.020 H2 2EL 27 2EL H3 H3 H 0 1 N N N -2.650 -7.686 18.559 -10.244 -1.532 0.064 H3 2EL 28 2EL H4 H4 H 0 1 N N N -2.208 -6.101 16.297 -8.251 -1.276 1.463 H4 2EL 29 2EL H5 H5 H 0 1 N N N -3.973 -5.913 16.572 -7.844 -2.274 0.046 H5 2EL 30 2EL H6 H6 H 0 1 N N N -2.409 -3.312 18.507 -5.904 -0.616 1.672 H6 2EL 31 2EL H7 H7 H 0 1 N N N -2.843 -3.764 16.824 -5.497 -1.614 0.256 H7 2EL 32 2EL H8 H8 H 0 1 N N N -4.613 -4.005 19.301 -4.746 0.414 -0.957 H8 2EL 33 2EL H9 H9 H 0 1 N N N -5.050 -4.589 17.660 -5.153 1.412 0.459 H9 2EL 34 2EL H10 H10 H 0 1 N N N -3.939 -1.579 19.835 -2.147 1.365 -0.880 H10 2EL 35 2EL H11 H11 H 0 1 N N N -4.907 -0.208 19.196 -2.554 2.363 0.537 H11 2EL 36 2EL H12 H12 H 0 1 N N N -6.085 -2.790 20.437 -0.730 1.196 1.826 H12 2EL 37 2EL H13 H13 H 0 1 N N N -6.039 -1.750 22.461 -0.153 -0.860 0.869 H13 2EL 38 2EL H14 H14 H 0 1 N N N -4.890 -0.589 21.715 -0.568 -0.314 -0.785 H14 2EL 39 2EL H15 H15 H 0 1 N N N -7.549 -1.260 18.757 -0.416 3.082 -0.375 H15 2EL 40 2EL H16 H16 H 0 1 N N N -9.402 -1.629 20.124 1.307 3.827 1.104 H16 2EL 41 2EL H17 H17 H 0 1 N N N -6.931 0.912 19.720 0.999 1.722 -1.653 H17 2EL 42 2EL H18 H18 H 0 1 N N N -8.571 0.630 20.398 2.222 2.226 -0.446 H18 2EL 43 2EL H20 H20 H 0 1 N N N -7.366 1.984 22.414 1.761 -1.604 -0.786 H20 2EL 44 2EL H21 H21 H 0 1 N N N -6.421 0.946 23.535 1.534 -0.374 -2.052 H21 2EL 45 2EL H22 H22 H 0 1 N N N -3.917 1.493 23.719 3.666 0.923 -2.839 H22 2EL 46 2EL H23 H23 H 0 1 N N N -2.279 2.995 22.433 6.132 0.857 -2.221 H23 2EL 47 2EL H24 H24 H 0 1 N N N -6.212 4.307 18.253 5.393 -2.535 2.479 H24 2EL 48 2EL H25 H25 H 0 1 N N N -2.074 5.304 19.289 8.844 -0.509 0.291 H25 2EL 49 2EL H26 H26 H 0 1 N N N -2.069 5.262 20.921 8.160 0.306 -1.009 H26 2EL 50 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2EL CAW CAX SING N N 1 2EL CAW OAV SING N N 2 2EL CAX OAY SING N N 3 2EL SAH CAI SING N N 4 2EL SAH CAG SING N N 5 2EL CAU OAV SING N N 6 2EL CAU CAI SING N N 7 2EL C2 N3 DOUB Y N 8 2EL C2 N1 SING Y N 9 2EL N3 C4 SING Y N 10 2EL CAG CAF SING N N 11 2EL CAB CAF SING N N 12 2EL CAB CAC SING N N 13 2EL CAB OAA SING N N 14 2EL N1 C6 DOUB Y N 15 2EL C4 NAR SING N N 16 2EL C4 C5 DOUB Y N 17 2EL CAF CAE SING N N 18 2EL CAC NAD SING N N 19 2EL C6 C5 SING Y N 20 2EL C6 CAK SING Y N 21 2EL C5 NAO SING Y N 22 2EL CAE NAD SING N N 23 2EL NAD CAJ SING N N 24 2EL CAK CAJ SING N N 25 2EL CAK CAN DOUB Y N 26 2EL NAO CAN SING Y N 27 2EL OAY H1 SING N N 28 2EL CAX H2 SING N N 29 2EL CAX H3 SING N N 30 2EL CAW H4 SING N N 31 2EL CAW H5 SING N N 32 2EL CAU H6 SING N N 33 2EL CAU H7 SING N N 34 2EL CAI H8 SING N N 35 2EL CAI H9 SING N N 36 2EL CAG H10 SING N N 37 2EL CAG H11 SING N N 38 2EL CAF H12 SING N N 39 2EL CAE H13 SING N N 40 2EL CAE H14 SING N N 41 2EL CAB H15 SING N N 42 2EL OAA H16 SING N N 43 2EL CAC H17 SING N N 44 2EL CAC H18 SING N N 45 2EL CAJ H20 SING N N 46 2EL CAJ H21 SING N N 47 2EL CAN H22 SING N N 48 2EL NAO H23 SING N N 49 2EL C2 H24 SING N N 50 2EL NAR H25 SING N N 51 2EL NAR H26 SING N N 52 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2EL SMILES ACDLabs 12.01 "OCCOCCSCC3CN(Cc2cnc1c2ncnc1N)CC3O" 2EL InChI InChI 1.03 "InChI=1S/C16H25N5O3S/c17-16-15-14(19-10-20-16)11(5-18-15)6-21-7-12(13(23)8-21)9-25-4-3-24-2-1-22/h5,10,12-13,18,22-23H,1-4,6-9H2,(H2,17,19,20)/t12-,13+/m1/s1" 2EL InChIKey InChI 1.03 OXNZLFLPEGTARO-OLZOCXBDSA-N 2EL SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2c(CN3C[C@H](O)[C@@H](CSCCOCCO)C3)c[nH]c12" 2EL SMILES CACTVS 3.370 "Nc1ncnc2c(CN3C[CH](O)[CH](CSCCOCCO)C3)c[nH]c12" 2EL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)c(ncn2)N)CN3C[C@@H]([C@H](C3)O)CSCCOCCO" 2EL SMILES "OpenEye OEToolkits" 1.7.6 "c1c(c2c([nH]1)c(ncn2)N)CN3CC(C(C3)O)CSCCOCCO" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2EL "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[2-(2-hydroxyethoxy)ethyl]sulfanyl}methyl)pyrrolidin-3-ol" 2EL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(3R,4S)-1-[(4-azanyl-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-[2-(2-hydroxyethyloxy)ethylsulfanylmethyl]pyrrolidin-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2EL "Create component" 2013-04-25 RCSB 2EL "Modify synonyms" 2013-04-25 RCSB 2EL "Initial release" 2013-05-01 RCSB 2EL "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2EL _pdbx_chem_comp_synonyms.name DIETGLYCOL-THIO-DADME-IMMUCILLIN-A _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##