data_2FD
#

_chem_comp.id                                   2FD
_chem_comp.name                                 "5-(6-AMINO-2-FLUORO-PURIN-9-YL)-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-OL"
_chem_comp.type                                 NON-POLYMER
_chem_comp.pdbx_type                            HETAIN
_chem_comp.formula                              "C10 H12 F N5 O3"
_chem_comp.mon_nstd_parent_comp_id              ?
_chem_comp.pdbx_synonyms                        "2-FLUORO-2'-DEOXYADENOSINE"
_chem_comp.pdbx_formal_charge                   0
_chem_comp.pdbx_initial_date                    2003-08-06
_chem_comp.pdbx_modified_date                   2020-06-17
_chem_comp.pdbx_ambiguous_flag                  N
_chem_comp.pdbx_release_status                  REL
_chem_comp.pdbx_replaced_by                     ?
_chem_comp.pdbx_replaces                        ?
_chem_comp.formula_weight                       269.232
_chem_comp.one_letter_code                      ?
_chem_comp.three_letter_code                    2FD
_chem_comp.pdbx_model_coordinates_details       ?
_chem_comp.pdbx_model_coordinates_missing_flag  N
_chem_comp.pdbx_ideal_coordinates_details       ?
_chem_comp.pdbx_ideal_coordinates_missing_flag  N
_chem_comp.pdbx_model_coordinates_db_code       1PKE
_chem_comp.pdbx_subcomponent_list               ?
_chem_comp.pdbx_processing_site                 RCSB
#   #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2FD  "O5'"   "O5'"   O  0  1  N  N  N  94.527  66.357  17.332  -5.004   1.235  -1.416  "O5'"   2FD   1  
2FD  "C5'"   "C5'"   C  0  1  N  N  N  94.036  65.453  18.322  -4.562   0.785  -0.133  "C5'"   2FD   2  
2FD  "C4'"   "C4'"   C  0  1  N  N  R  94.580  65.815  19.721  -3.427  -0.226  -0.311  "C4'"   2FD   3  
2FD  "O4'"   "O4'"   O  0  1  N  N  N  94.275  67.181  20.183  -2.224   0.429  -0.775  "O4'"   2FD   4  
2FD  "C1'"   "C1'"   C  0  1  N  N  R  93.061  67.211  20.962  -1.124  -0.431  -0.435  "C1'"   2FD   5  
2FD  N9      N9      N  0  1  Y  N  N  91.971  67.727  20.043   0.052   0.375  -0.098  N9      2FD   6  
2FD  C4      C4      C  0  1  Y  N  N  90.958  67.099  19.313   1.361  -0.033  -0.160  C4      2FD   7  
2FD  N3      N3      N  0  1  Y  N  N  90.664  65.774  19.234   1.977  -1.160  -0.501  N3      2FD   8  
2FD  C2      C2      C  0  1  Y  N  N  89.615  65.501  18.431   3.292  -1.247  -0.454  C2      2FD   9  
2FD  F       F       F  0  1  N  N  N  89.254  64.257  18.284   3.880  -2.411  -0.809  F       2FD  10  
2FD  N1      N1      N  0  1  Y  N  N  88.886  66.379  17.748   4.056  -0.237  -0.073  N1      2FD  11  
2FD  C6      C6      C  0  1  Y  N  N  89.191  67.681  17.838   3.527   0.928   0.286  C6      2FD  12  
2FD  N6      N6      N  0  1  N  N  N  88.461  68.536  17.157   4.335   1.979   0.684  N6      2FD  13  
2FD  C5      C5      C  0  1  Y  N  N  90.275  68.086  18.655   2.129   1.067   0.258  C5      2FD  14  
2FD  N7      N7      N  0  1  Y  N  N  90.811  69.315  18.938   1.267   2.073   0.539  N7      2FD  15  
2FD  C8      C8      C  0  1  Y  N  N  91.778  69.010  19.741   0.047   1.669   0.334  C8      2FD  16  
2FD  "C2'"   "C2'"   C  0  1  N  N  N  92.908  65.735  21.412  -1.552  -1.268   0.786  "C2'"   2FD  17  
2FD  "C3'"   "C3'"   C  0  1  N  N  S  94.071  64.895  20.829  -3.011  -0.826   1.056  "C3'"   2FD  18  
2FD  "O3'"   "O3'"   O  0  1  N  N  N  95.131  64.720  21.734  -3.830  -1.948   1.392  "O3'"   2FD  19  
2FD  "H5'"   "H5'"   H  0  1  N  N  N  94.192  66.134  16.471  -5.717   1.868  -1.259  "H5'"   2FD  20  
2FD  "H5'1"  "1H5'"  H  0  0  N  N  N  94.257  64.393  18.057  -5.391   0.311   0.392  "H5'1"  2FD  21  
2FD  "H5'2"  "2H5'"  H  0  0  N  N  N  92.922  65.401  18.315  -4.203   1.635   0.446  "H5'2"  2FD  22  
2FD  "H4'"   "H4'"   H  0  1  N  N  N  95.677  65.704  19.558  -3.723  -1.016  -1.003  "H4'"   2FD  23  
2FD  "H1'"   "H1'"   H  0  1  N  N  N  93.036  67.873  21.859  -0.894  -1.089  -1.273  "H1'"   2FD  24  
2FD  HN61    1HN6    H  0  0  N  N  N  87.479  68.406  17.401   5.298   1.869   0.703  HN61    2FD  25  
2FD  HN62    2HN6    H  0  0  N  N  N  88.693  69.527  17.226   3.938   2.826   0.940  HN62    2FD  26  
2FD  H8      H8      H  0  1  N  N  N  92.413  69.813  20.152  -0.838   2.268   0.483  H8      2FD  27  
2FD  "H2'1"  "1H2'"  H  0  0  N  N  N  91.910  65.315  21.147  -1.513  -2.332   0.552  "H2'1"  2FD  28  
2FD  "H2'2"  "2H2'"  H  0  0  N  N  N  92.832  65.638  22.520  -0.920  -1.042   1.644  "H2'2"  2FD  29  
2FD  "H3'"   "H3'"   H  0  1  N  N  N  93.734  63.874  20.533  -3.049  -0.070   1.840  "H3'"   2FD  30  
2FD  H1      H1      H  0  1  N  N  N  94.814  64.148  22.423  -3.463  -2.329   2.201  H1      2FD  31  
#   #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2FD  "O5'"  "C5'"   SING  N  N   1  
2FD  "O5'"  "H5'"   SING  N  N   2  
2FD  "C5'"  "C4'"   SING  N  N   3  
2FD  "C5'"  "H5'1"  SING  N  N   4  
2FD  "C5'"  "H5'2"  SING  N  N   5  
2FD  "C4'"  "O4'"   SING  N  N   6  
2FD  "C4'"  "C3'"   SING  N  N   7  
2FD  "C4'"  "H4'"   SING  N  N   8  
2FD  "O4'"  "C1'"   SING  N  N   9  
2FD  "C1'"  N9      SING  N  N  10  
2FD  "C1'"  "C2'"   SING  N  N  11  
2FD  "C1'"  "H1'"   SING  N  N  12  
2FD  N9     C4      SING  Y  N  13  
2FD  N9     C8      SING  Y  N  14  
2FD  C4     N3      DOUB  Y  N  15  
2FD  C4     C5      SING  Y  N  16  
2FD  N3     C2      SING  Y  N  17  
2FD  C2     F       SING  N  N  18  
2FD  C2     N1      DOUB  Y  N  19  
2FD  N1     C6      SING  Y  N  20  
2FD  C6     N6      SING  N  N  21  
2FD  C6     C5      DOUB  Y  N  22  
2FD  N6     HN61    SING  N  N  23  
2FD  N6     HN62    SING  N  N  24  
2FD  C5     N7      SING  Y  N  25  
2FD  N7     C8      DOUB  Y  N  26  
2FD  C8     H8      SING  N  N  27  
2FD  "C2'"  "C3'"   SING  N  N  28  
2FD  "C2'"  "H2'1"  SING  N  N  29  
2FD  "C2'"  "H2'2"  SING  N  N  30  
2FD  "C3'"  "O3'"   SING  N  N  31  
2FD  "C3'"  "H3'"   SING  N  N  32  
2FD  "O3'"  H1      SING  N  N  33  
#   #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2FD  SMILES            ACDLabs               10.04  "Fc1nc(c2ncn(c2n1)C3OC(C(O)C3)CO)N"  
2FD  SMILES_CANONICAL  CACTVS                3.341  "Nc1nc(F)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO)O3"  
2FD  SMILES            CACTVS                3.341  "Nc1nc(F)nc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3"  
2FD  SMILES_CANONICAL  "OpenEye OEToolkits"  1.5.0  "c1nc2c(nc(nc2n1[C@H]3C[C@@H]([C@H](O3)CO)O)F)N"  
2FD  SMILES            "OpenEye OEToolkits"  1.5.0  "c1nc2c(nc(nc2n1C3CC(C(O3)CO)O)F)N"  
2FD  InChI             InChI                 1.03   "InChI=1S/C10H12FN5O3/c11-10-14-8(12)7-9(15-10)16(3-13-7)6-1-4(18)5(2-17)19-6/h3-6,17-18H,1-2H2,(H2,12,14,15)/t4-,5+,6+/m0/s1"  
2FD  InChIKey          InChI                 1.03   ZWPYUXAXLRFWQC-KVQBGUIXSA-N  
#   #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2FD  "SYSTEMATIC NAME"  ACDLabs               10.04  "2'-deoxy-2-fluoroadenosine"  
2FD  "SYSTEMATIC NAME"  "OpenEye OEToolkits"  1.5.0  "(2R,3S,5R)-5-(6-amino-2-fluoro-purin-9-yl)-2-(hydroxymethyl)oxolan-3-ol"  
#   #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2FD  "Create component"   2003-08-06  RCSB  
2FD  "Modify descriptor"  2011-06-04  RCSB  
2FD  "Modify synonyms"    2020-06-05  PDBE  
#
_pdbx_chem_comp_synonyms.ordinal     1
_pdbx_chem_comp_synonyms.comp_id     2FD
_pdbx_chem_comp_synonyms.name        "2-FLUORO-2'-DEOXYADENOSINE"
_pdbx_chem_comp_synonyms.provenance  ?
_pdbx_chem_comp_synonyms.type        ?
##