data_2FD # _chem_comp.id 2FD _chem_comp.name "5-(6-AMINO-2-FLUORO-PURIN-9-YL)-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-OL" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 F N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-FLUORO-2'-DEOXYADENOSINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-08-06 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 269.232 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2FD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PKE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2FD "O5'" "O5'" O 0 1 N N N 94.527 66.357 17.332 -5.004 1.235 -1.416 "O5'" 2FD 1 2FD "C5'" "C5'" C 0 1 N N N 94.036 65.453 18.322 -4.562 0.785 -0.133 "C5'" 2FD 2 2FD "C4'" "C4'" C 0 1 N N R 94.580 65.815 19.721 -3.427 -0.226 -0.311 "C4'" 2FD 3 2FD "O4'" "O4'" O 0 1 N N N 94.275 67.181 20.183 -2.224 0.429 -0.775 "O4'" 2FD 4 2FD "C1'" "C1'" C 0 1 N N R 93.061 67.211 20.962 -1.124 -0.431 -0.435 "C1'" 2FD 5 2FD N9 N9 N 0 1 Y N N 91.971 67.727 20.043 0.052 0.375 -0.098 N9 2FD 6 2FD C4 C4 C 0 1 Y N N 90.958 67.099 19.313 1.361 -0.033 -0.160 C4 2FD 7 2FD N3 N3 N 0 1 Y N N 90.664 65.774 19.234 1.977 -1.160 -0.501 N3 2FD 8 2FD C2 C2 C 0 1 Y N N 89.615 65.501 18.431 3.292 -1.247 -0.454 C2 2FD 9 2FD F F F 0 1 N N N 89.254 64.257 18.284 3.880 -2.411 -0.809 F 2FD 10 2FD N1 N1 N 0 1 Y N N 88.886 66.379 17.748 4.056 -0.237 -0.073 N1 2FD 11 2FD C6 C6 C 0 1 Y N N 89.191 67.681 17.838 3.527 0.928 0.286 C6 2FD 12 2FD N6 N6 N 0 1 N N N 88.461 68.536 17.157 4.335 1.979 0.684 N6 2FD 13 2FD C5 C5 C 0 1 Y N N 90.275 68.086 18.655 2.129 1.067 0.258 C5 2FD 14 2FD N7 N7 N 0 1 Y N N 90.811 69.315 18.938 1.267 2.073 0.539 N7 2FD 15 2FD C8 C8 C 0 1 Y N N 91.778 69.010 19.741 0.047 1.669 0.334 C8 2FD 16 2FD "C2'" "C2'" C 0 1 N N N 92.908 65.735 21.412 -1.552 -1.268 0.786 "C2'" 2FD 17 2FD "C3'" "C3'" C 0 1 N N S 94.071 64.895 20.829 -3.011 -0.826 1.056 "C3'" 2FD 18 2FD "O3'" "O3'" O 0 1 N N N 95.131 64.720 21.734 -3.830 -1.948 1.392 "O3'" 2FD 19 2FD "H5'" "H5'" H 0 1 N N N 94.192 66.134 16.471 -5.717 1.868 -1.259 "H5'" 2FD 20 2FD "H5'1" "1H5'" H 0 0 N N N 94.257 64.393 18.057 -5.391 0.311 0.392 "H5'1" 2FD 21 2FD "H5'2" "2H5'" H 0 0 N N N 92.922 65.401 18.315 -4.203 1.635 0.446 "H5'2" 2FD 22 2FD "H4'" "H4'" H 0 1 N N N 95.677 65.704 19.558 -3.723 -1.016 -1.003 "H4'" 2FD 23 2FD "H1'" "H1'" H 0 1 N N N 93.036 67.873 21.859 -0.894 -1.089 -1.273 "H1'" 2FD 24 2FD HN61 1HN6 H 0 0 N N N 87.479 68.406 17.401 5.298 1.869 0.703 HN61 2FD 25 2FD HN62 2HN6 H 0 0 N N N 88.693 69.527 17.226 3.938 2.826 0.940 HN62 2FD 26 2FD H8 H8 H 0 1 N N N 92.413 69.813 20.152 -0.838 2.268 0.483 H8 2FD 27 2FD "H2'1" "1H2'" H 0 0 N N N 91.910 65.315 21.147 -1.513 -2.332 0.552 "H2'1" 2FD 28 2FD "H2'2" "2H2'" H 0 0 N N N 92.832 65.638 22.520 -0.920 -1.042 1.644 "H2'2" 2FD 29 2FD "H3'" "H3'" H 0 1 N N N 93.734 63.874 20.533 -3.049 -0.070 1.840 "H3'" 2FD 30 2FD H1 H1 H 0 1 N N N 94.814 64.148 22.423 -3.463 -2.329 2.201 H1 2FD 31 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2FD "O5'" "C5'" SING N N 1 2FD "O5'" "H5'" SING N N 2 2FD "C5'" "C4'" SING N N 3 2FD "C5'" "H5'1" SING N N 4 2FD "C5'" "H5'2" SING N N 5 2FD "C4'" "O4'" SING N N 6 2FD "C4'" "C3'" SING N N 7 2FD "C4'" "H4'" SING N N 8 2FD "O4'" "C1'" SING N N 9 2FD "C1'" N9 SING N N 10 2FD "C1'" "C2'" SING N N 11 2FD "C1'" "H1'" SING N N 12 2FD N9 C4 SING Y N 13 2FD N9 C8 SING Y N 14 2FD C4 N3 DOUB Y N 15 2FD C4 C5 SING Y N 16 2FD N3 C2 SING Y N 17 2FD C2 F SING N N 18 2FD C2 N1 DOUB Y N 19 2FD N1 C6 SING Y N 20 2FD C6 N6 SING N N 21 2FD C6 C5 DOUB Y N 22 2FD N6 HN61 SING N N 23 2FD N6 HN62 SING N N 24 2FD C5 N7 SING Y N 25 2FD N7 C8 DOUB Y N 26 2FD C8 H8 SING N N 27 2FD "C2'" "C3'" SING N N 28 2FD "C2'" "H2'1" SING N N 29 2FD "C2'" "H2'2" SING N N 30 2FD "C3'" "O3'" SING N N 31 2FD "C3'" "H3'" SING N N 32 2FD "O3'" H1 SING N N 33 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2FD SMILES ACDLabs 10.04 "Fc1nc(c2ncn(c2n1)C3OC(C(O)C3)CO)N" 2FD SMILES_CANONICAL CACTVS 3.341 "Nc1nc(F)nc2n(cnc12)[C@H]3C[C@H](O)[C@@H](CO)O3" 2FD SMILES CACTVS 3.341 "Nc1nc(F)nc2n(cnc12)[CH]3C[CH](O)[CH](CO)O3" 2FD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1[C@H]3C[C@@H]([C@H](O3)CO)O)F)N" 2FD SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(nc(nc2n1C3CC(C(O3)CO)O)F)N" 2FD InChI InChI 1.03 "InChI=1S/C10H12FN5O3/c11-10-14-8(12)7-9(15-10)16(3-13-7)6-1-4(18)5(2-17)19-6/h3-6,17-18H,1-2H2,(H2,12,14,15)/t4-,5+,6+/m0/s1" 2FD InChIKey InChI 1.03 ZWPYUXAXLRFWQC-KVQBGUIXSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2FD "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxy-2-fluoroadenosine" 2FD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3S,5R)-5-(6-amino-2-fluoro-purin-9-yl)-2-(hydroxymethyl)oxolan-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2FD "Create component" 2003-08-06 RCSB 2FD "Modify descriptor" 2011-06-04 RCSB 2FD "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2FD _pdbx_chem_comp_synonyms.name "2-FLUORO-2'-DEOXYADENOSINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##