data_2FE # _chem_comp.id 2FE _chem_comp.name "2'-fluoro-2'-deoxy-1,N6-ethenoadenine" _chem_comp.type "DNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H13 F N5 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "3-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-3H-imidazo[2,1-i]purine" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2008-04-28 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 373.234 _chem_comp.one_letter_code N _chem_comp.three_letter_code 2FE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3CWU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2FE O3P O3P O 0 1 N Y N 35.652 -8.749 6.381 -5.547 2.302 -1.204 O3P 2FE 1 2FE P P P 0 1 N N N 36.393 -9.973 5.655 -5.277 1.117 -0.147 P 2FE 2 2FE O1P O1P O 0 1 N N N 36.481 -9.681 4.203 -5.167 1.686 1.215 O1P 2FE 3 2FE O2P O2P O 0 1 N N N 35.773 -11.245 6.085 -6.497 0.068 -0.194 O2P 2FE 4 2FE "O5'" "O5'" O 0 1 N N N 37.850 -9.879 6.298 -3.905 0.363 -0.525 "O5'" 2FE 5 2FE "F1'" "F1'" F 0 1 N N N 37.371 -13.671 6.562 0.628 -1.849 1.654 "F1'" 2FE 6 2FE N9 N9 N 0 1 Y N N 36.172 -13.247 9.156 1.321 0.031 -0.014 N9 2FE 7 2FE C8 C8 C 0 1 Y N N 35.056 -13.049 8.372 1.213 1.082 0.845 C8 2FE 8 2FE N7 N7 N 0 1 Y N N 33.929 -13.459 8.901 2.391 1.598 1.059 N7 2FE 9 2FE C5 C5 C 0 1 Y N N 34.301 -13.958 10.123 3.316 0.912 0.355 C5 2FE 10 2FE C4 C4 C 0 1 Y N N 35.689 -13.844 10.319 2.648 -0.099 -0.341 C4 2FE 11 2FE N3 N3 N 0 1 Y N N 36.392 -14.249 11.435 3.340 -0.935 -1.127 N3 2FE 12 2FE C2 C2 C 0 1 Y N N 35.569 -14.798 12.375 4.629 -0.847 -1.274 C2 2FE 13 2FE N1 N1 N 0 1 Y N N 34.214 -14.967 12.309 5.376 0.101 -0.642 N1 2FE 14 2FE C6 C6 C 0 1 Y N N 33.546 -14.564 11.180 4.766 1.011 0.189 C6 2FE 15 2FE C10 C10 C 0 1 Y N N 33.266 -15.487 13.134 6.714 0.395 -0.633 C10 2FE 16 2FE C11 C11 C 0 1 Y N N 32.106 -15.356 12.455 6.884 1.454 0.185 C11 2FE 17 2FE N6 N6 N 0 1 Y N N 32.262 -14.760 11.199 5.691 1.813 0.674 N6 2FE 18 2FE "C2'" "C2'" C 0 1 N N S 38.147 -13.683 7.677 0.092 -2.077 0.382 "C2'" 2FE 19 2FE "C5'" "C5'" C 0 1 N N N 38.698 -10.949 6.257 -3.336 -0.669 0.283 "C5'" 2FE 20 2FE "C4'" "C4'" C 0 1 N N R 38.954 -11.487 7.641 -2.041 -1.166 -0.362 "C4'" 2FE 21 2FE "O4'" "O4'" O 0 1 N N N 37.751 -11.548 8.464 -1.039 -0.126 -0.345 "O4'" 2FE 22 2FE "C1'" "C1'" C 0 1 N N R 37.592 -12.911 8.858 0.223 -0.812 -0.495 "C1'" 2FE 23 2FE "C3'" "C3'" C 0 1 N N R 39.410 -12.888 7.420 -1.432 -2.315 0.471 "C3'" 2FE 24 2FE "O3'" "O3'" O 0 1 N N N 40.514 -13.321 8.182 -1.774 -3.581 -0.096 "O3'" 2FE 25 2FE HO3P HO3P H 0 0 N Y N 35.506 -8.964 7.295 -6.358 2.800 -1.037 HO3P 2FE 26 2FE HO2P HO2P H 0 0 N N N 35.640 -11.805 5.329 -6.627 -0.345 -1.059 HO2P 2FE 27 2FE H8 H8 H 0 1 N N N 35.106 -12.591 7.395 0.291 1.435 1.282 H8 2FE 28 2FE H2 H2 H 0 1 N N N 36.046 -15.141 13.281 5.127 -1.553 -1.922 H2 2FE 29 2FE H10 H10 H 0 1 N N N 33.409 -15.912 14.117 7.488 -0.124 -1.179 H10 2FE 30 2FE H11 H11 H 0 1 N N N 31.152 -15.680 12.843 7.826 1.932 0.409 H11 2FE 31 2FE "H2'" "H2'" H 0 1 N N N 38.253 -14.756 7.895 0.586 -2.924 -0.094 "H2'" 2FE 32 2FE "H5'" "H5'" H 0 1 N N N 38.245 -11.741 5.643 -3.119 -0.275 1.276 "H5'" 2FE 33 2FE "H5'A" "H5'A" H 0 0 N N N 39.655 -10.623 5.824 -4.042 -1.496 0.366 "H5'A" 2FE 34 2FE "H4'" "H4'" H 0 1 N N N 39.670 -10.836 8.164 -2.229 -1.495 -1.384 "H4'" 2FE 35 2FE "H1'" "H1'" H 0 1 N N N 38.114 -13.152 9.796 0.384 -1.087 -1.537 "H1'" 2FE 36 2FE "H3'" "H3'" H 0 1 N N N 39.829 -13.015 6.411 -1.768 -2.256 1.506 "H3'" 2FE 37 2FE "HO3'" "HO3'" H 0 0 N N N 41.271 -13.418 7.616 -1.369 -4.336 0.352 "HO3'" 2FE 38 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2FE P O3P SING N N 1 2FE O3P HO3P SING N N 2 2FE O1P P DOUB N N 3 2FE P O2P SING N N 4 2FE P "O5'" SING N N 5 2FE O2P HO2P SING N N 6 2FE "C5'" "O5'" SING N N 7 2FE "F1'" "C2'" SING N N 8 2FE C8 N9 SING Y N 9 2FE "C1'" N9 SING N N 10 2FE N9 C4 SING Y N 11 2FE C8 N7 DOUB Y N 12 2FE C8 H8 SING N N 13 2FE N7 C5 SING Y N 14 2FE C5 C4 DOUB Y N 15 2FE C5 C6 SING Y N 16 2FE C4 N3 SING Y N 17 2FE N3 C2 DOUB Y N 18 2FE N1 C2 SING Y N 19 2FE C2 H2 SING N N 20 2FE C6 N1 SING Y N 21 2FE N1 C10 SING Y N 22 2FE C6 N6 DOUB Y N 23 2FE C11 C10 DOUB Y N 24 2FE C10 H10 SING N N 25 2FE N6 C11 SING Y N 26 2FE C11 H11 SING N N 27 2FE "C3'" "C2'" SING N N 28 2FE "C2'" "C1'" SING N N 29 2FE "C2'" "H2'" SING N N 30 2FE "C5'" "C4'" SING N N 31 2FE "C5'" "H5'" SING N N 32 2FE "C5'" "H5'A" SING N N 33 2FE "C3'" "C4'" SING N N 34 2FE "C4'" "O4'" SING N N 35 2FE "C4'" "H4'" SING N N 36 2FE "O4'" "C1'" SING N N 37 2FE "C1'" "H1'" SING N N 38 2FE "C3'" "O3'" SING N N 39 2FE "C3'" "H3'" SING N N 40 2FE "O3'" "HO3'" SING N N 41 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2FE SMILES ACDLabs 10.04 "O=P(O)(O)OCC4OC(n3cnc1c3ncn2ccnc12)C(F)C4O" 2FE SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@H](F)[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3c4nccn4cnc23" 2FE SMILES CACTVS 3.341 "O[CH]1[CH](F)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3c4nccn4cnc23" 2FE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1cn2cnc3c(c2n1)ncn3[C@H]4[C@H]([C@@H]([C@H](O4)COP(=O)(O)O)O)F" 2FE SMILES "OpenEye OEToolkits" 1.5.0 "c1cn2cnc3c(c2n1)ncn3C4C(C(C(O4)COP(=O)(O)O)O)F" 2FE InChI InChI 1.03 "InChI=1S/C12H13FN5O6P/c13-7-9(19)6(3-23-25(20,21)22)24-12(7)18-5-15-8-10-14-1-2-17(10)4-16-11(8)18/h1-2,4-7,9,12,19H,3H2,(H2,20,21,22)/t6-,7+,9-,12-/m1/s1" 2FE InChIKey InChI 1.03 SHSHKRQJDKZKDR-MCOZSMFQSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2FE "SYSTEMATIC NAME" ACDLabs 10.04 "3-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-3H-imidazo[2,1-i]purine" 2FE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4S,5R)-4-fluoro-3-hydroxy-5-imidazo[2,1-f]purin-3-yl-oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2FE "Create component" 2008-04-28 RCSB 2FE "Modify aromatic_flag" 2011-06-04 RCSB 2FE "Modify descriptor" 2011-06-04 RCSB 2FE "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2FE _pdbx_chem_comp_synonyms.name "3-(2-deoxy-2-fluoro-5-O-phosphono-beta-D-arabinofuranosyl)-3H-imidazo[2,1-i]purine" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##