data_2G8 # _chem_comp.id 2G8 _chem_comp.name "P-((((benzyloxy)carbonyl)amino)methyl)-N-((S)-4-methyl-1-oxo-1-(propylamino)pentan-2-yl)phosphonamidic acid" _chem_comp.type PEPTIDE-LIKE _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H30 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-propyl-L-leucinamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-10-11 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.422 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2G8 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4MXJ _chem_comp.pdbx_subcomponent_list "PHQ PGL LEU 3CN" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2G8 C7 C7 C 0 1 N N N 13.618 41.574 -11.008 -4.876 1.205 -0.051 C7 PHQ 1 2G8 C6 C6 C 0 1 Y N N 14.999 41.160 -11.446 -6.212 0.733 0.461 C6 PHQ 2 2G8 C1 C1 C 0 1 Y N N 15.188 40.609 -12.719 -7.296 0.666 -0.394 C1 PHQ 3 2G8 C2 C2 C 0 1 Y N N 16.459 40.216 -13.144 -8.522 0.233 0.076 C2 PHQ 4 2G8 C3 C3 C 0 1 Y N N 17.555 40.377 -12.300 -8.663 -0.134 1.402 C3 PHQ 5 2G8 C4 C4 C 0 1 Y N N 17.379 40.938 -11.034 -7.579 -0.068 2.257 C4 PHQ 6 2G8 C5 C5 C 0 1 Y N N 16.109 41.320 -10.606 -6.352 0.361 1.785 C5 PHQ 7 2G8 C9 C9 C 0 1 N N N 12.458 40.867 -8.915 -2.891 0.322 -1.039 C9 PHQ 8 2G8 O10 O10 O 0 1 N N N 12.010 41.984 -8.707 -2.467 1.461 -1.061 O10 PHQ 9 2G8 O8 O8 O 0 1 N N N 13.041 40.584 -10.116 -4.117 0.069 -0.543 O8 PHQ 10 2G8 N11 N11 N 0 1 N N N 12.590 39.959 -7.906 -2.134 -0.688 -1.512 N PGL 11 2G8 C12 C12 C 0 1 N N N 12.003 40.178 -6.593 -0.800 -0.413 -2.052 C PGL 12 2G8 P13 P13 P 0 1 N N N 11.544 38.520 -5.964 0.447 -0.667 -0.747 P PGL 13 2G8 O14 O14 O 0 1 N N N 10.196 38.148 -6.526 0.174 0.249 0.382 O1 PGL 14 2G8 O15 O15 O 0 1 N N N 12.654 37.540 -6.164 0.381 -2.191 -0.230 O2 PGL 15 2G8 N16 N16 N 0 1 N N N 11.340 38.940 -4.286 1.980 -0.351 -1.367 N LEU 16 2G8 C17 C17 C 0 1 N N S 10.142 38.431 -3.581 3.001 -0.435 -0.315 CA LEU 17 2G8 C22 C22 C 0 1 N N N 8.915 39.306 -3.828 4.074 0.591 -0.574 C LEU 18 2G8 O23 O23 O 0 1 N N N 7.792 38.830 -3.867 4.139 1.142 -1.652 O LEU 19 2G8 C18 C18 C 0 1 N N N 10.492 38.441 -2.095 3.621 -1.834 -0.316 CB LEU 20 2G8 C19 C19 C 0 1 N N N 9.372 37.951 -1.170 4.582 -1.967 0.867 CG LEU 21 2G8 C20 C20 C 0 1 N N N 9.226 36.434 -1.278 3.788 -1.924 2.175 CD1 LEU 22 2G8 C21 C21 C 0 1 N N N 9.678 38.369 0.275 5.331 -3.298 0.769 CD2 LEU 23 2G8 C29 C29 C 0 1 N N N 8.562 42.573 -1.807 7.839 3.228 1.201 CA 3CN 24 2G8 C26 C26 C 0 1 N N N 8.424 42.892 -3.290 6.821 2.108 1.422 CB 3CN 25 2G8 C25 C25 C 0 1 N N N 8.138 41.660 -4.151 5.938 1.968 0.181 CC 3CN 26 2G8 N24 N24 N 0 1 N N N 9.169 40.654 -3.960 4.963 0.895 0.393 ND 3CN 27 2G8 H23 H23 H 0 1 N N N 13.680 42.539 -10.484 -5.029 1.918 -0.862 H23 PHQ 28 2G8 H24 H24 H 0 1 N N N 12.975 41.679 -11.894 -4.327 1.687 0.757 H24 PHQ 29 2G8 H25 H25 H 0 1 N N N 14.342 40.487 -13.379 -7.186 0.952 -1.429 H25 PHQ 30 2G8 H26 H26 H 0 1 N N N 16.592 39.788 -14.126 -9.369 0.182 -0.591 H26 PHQ 31 2G8 H27 H27 H 0 1 N N N 18.538 40.069 -12.624 -9.621 -0.472 1.769 H27 PHQ 32 2G8 H28 H28 H 0 1 N N N 18.230 41.077 -10.384 -7.690 -0.354 3.292 H28 PHQ 33 2G8 H29 H29 H 0 1 N N N 15.979 41.742 -9.620 -5.504 0.408 2.452 H29 PHQ 34 2G8 H30 H30 H 0 1 N N N 13.105 39.118 -8.074 -2.473 -1.597 -1.495 HN1 PGL 35 2G8 H21 H21 H 0 1 N N N 12.734 40.653 -5.922 -0.599 -1.088 -2.884 H1 PGL 36 2G8 H22 H22 H 0 1 N N N 11.111 40.817 -6.675 -0.756 0.618 -2.401 H2 PGL 37 2G8 H20 H20 H 0 1 N N N 12.329 36.786 -6.642 0.624 -2.844 -0.900 HO2 PGL 38 2G8 H1 H1 H 0 1 N N N 12.141 38.598 -3.795 2.196 -0.974 -2.131 H LEU 39 2G8 H2 H2 H 0 1 N N N 9.926 37.400 -3.899 2.541 -0.243 0.654 HA LEU 40 2G8 H3 H3 H 0 1 N N N 11.368 37.793 -1.945 2.832 -2.581 -0.230 HB2 LEU 41 2G8 H4 H4 H 0 1 N N N 10.745 39.473 -1.810 4.168 -1.988 -1.247 HB3 LEU 42 2G8 H5 H5 H 0 1 N N N 8.427 38.421 -1.480 5.297 -1.145 0.849 HG LEU 43 2G8 H6 H6 H 0 1 N N N 8.420 36.094 -0.611 4.478 -1.944 3.019 HD11 LEU 44 2G8 H7 H7 H 0 1 N N N 8.982 36.162 -2.316 3.197 -1.009 2.211 HD12 LEU 45 2G8 H8 H8 H 0 1 N N N 10.171 35.953 -0.986 3.125 -2.787 2.227 HD13 LEU 46 2G8 H9 H9 H 0 1 N N N 8.874 38.017 0.937 5.896 -3.329 -0.162 HD21 LEU 47 2G8 H10 H10 H 0 1 N N N 10.634 37.925 0.591 6.015 -3.392 1.612 HD22 LEU 48 2G8 H11 H11 H 0 1 N N N 9.747 39.465 0.333 4.615 -4.120 0.788 HD23 LEU 49 2G8 H17 H17 H 0 1 N N N 8.766 43.499 -1.250 7.313 4.166 1.021 HA1 3CN 50 2G8 H18 H18 H 0 1 N N N 7.628 42.123 -1.440 8.468 3.328 2.085 HA2 3CN 51 2G8 H19 H19 H 0 1 N N N 9.392 41.866 -1.660 8.460 2.989 0.338 HA3 3CN 52 2G8 H15 H15 H 0 1 N N N 9.362 43.350 -3.637 7.346 1.170 1.602 HB1 3CN 53 2G8 H16 H16 H 0 1 N N N 7.598 43.607 -3.418 6.199 2.347 2.285 HB2 3CN 54 2G8 H13 H13 H 0 1 N N N 8.114 41.956 -5.210 5.412 2.906 0.001 HC1 3CN 55 2G8 H14 H14 H 0 1 N N N 7.163 41.238 -3.866 6.559 1.729 -0.682 HC2 3CN 56 2G8 H12 H12 H 0 1 N N N 10.121 40.958 -3.922 4.957 0.404 1.229 HND1 3CN 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2G8 C2 C1 DOUB Y N 1 2G8 C2 C3 SING Y N 2 2G8 C1 C6 SING Y N 3 2G8 C3 C4 DOUB Y N 4 2G8 C6 C7 SING N N 5 2G8 C6 C5 DOUB Y N 6 2G8 C4 C5 SING Y N 7 2G8 C7 O8 SING N N 8 2G8 O8 C9 SING N N 9 2G8 C9 O10 DOUB N N 10 2G8 C9 N11 SING N N 11 2G8 N11 C12 SING N N 12 2G8 C12 P13 SING N N 13 2G8 O14 P13 DOUB N N 14 2G8 O15 P13 SING N N 15 2G8 P13 N16 SING N N 16 2G8 N16 C17 SING N N 17 2G8 C25 N24 SING N N 18 2G8 C25 C26 SING N N 19 2G8 N24 C22 SING N N 20 2G8 O23 C22 DOUB N N 21 2G8 C22 C17 SING N N 22 2G8 C17 C18 SING N N 23 2G8 C26 C29 SING N N 24 2G8 C18 C19 SING N N 25 2G8 C20 C19 SING N N 26 2G8 C19 C21 SING N N 27 2G8 N16 H1 SING N N 28 2G8 C17 H2 SING N N 29 2G8 C18 H3 SING N N 30 2G8 C18 H4 SING N N 31 2G8 C19 H5 SING N N 32 2G8 C20 H6 SING N N 33 2G8 C20 H7 SING N N 34 2G8 C20 H8 SING N N 35 2G8 C21 H9 SING N N 36 2G8 C21 H10 SING N N 37 2G8 C21 H11 SING N N 38 2G8 N24 H12 SING N N 39 2G8 C25 H13 SING N N 40 2G8 C25 H14 SING N N 41 2G8 C26 H15 SING N N 42 2G8 C26 H16 SING N N 43 2G8 C29 H17 SING N N 44 2G8 C29 H18 SING N N 45 2G8 C29 H19 SING N N 46 2G8 O15 H20 SING N N 47 2G8 C12 H21 SING N N 48 2G8 C12 H22 SING N N 49 2G8 C7 H23 SING N N 50 2G8 C7 H24 SING N N 51 2G8 C1 H25 SING N N 52 2G8 C2 H26 SING N N 53 2G8 C3 H27 SING N N 54 2G8 C4 H28 SING N N 55 2G8 C5 H29 SING N N 56 2G8 N11 H30 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2G8 SMILES ACDLabs 12.01 "O=C(NCCC)C(NP(=O)(O)CNC(=O)OCc1ccccc1)CC(C)C" 2G8 InChI InChI 1.03 "InChI=1S/C18H30N3O5P/c1-4-10-19-17(22)16(11-14(2)3)21-27(24,25)13-20-18(23)26-12-15-8-6-5-7-9-15/h5-9,14,16H,4,10-13H2,1-3H3,(H,19,22)(H,20,23)(H2,21,24,25)/t16-/m0/s1" 2G8 InChIKey InChI 1.03 GSTDCDKICCYPKA-INIZCTEOSA-N 2G8 SMILES_CANONICAL CACTVS 3.385 "CCCNC(=O)[C@H](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1" 2G8 SMILES CACTVS 3.385 "CCCNC(=O)[CH](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1" 2G8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCNC(=O)[C@H](CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" 2G8 SMILES "OpenEye OEToolkits" 1.7.6 "CCCNC(=O)C(CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2G8 "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-propyl-L-leucinamide" 2G8 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2S)-4-methyl-1-oxidanylidene-1-(propylamino)pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2G8 "Create component" 2013-10-11 RCSB 2G8 "Modify synonyms" 2013-10-11 RCSB 2G8 "Initial release" 2014-04-02 RCSB 2G8 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2G8 _pdbx_chem_comp_synonyms.name "N~2~-[(R)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-propyl-L-leucinamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##