data_2G9 # _chem_comp.id 2G9 _chem_comp.name ;P-((((benzyloxy)carbonyl)amino)methyl)-N-((S)-4-methyl-1-(((S)-2-methylbutyl)amino)-1-oxopentan- 2-yl)phosphonamidic acid ; _chem_comp.type PEPTIDE-LIKE _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H34 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-[(2S)-2-methylbutyl]-L-leucinamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-10-11 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 427.475 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2G9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4MZN _chem_comp.pdbx_subcomponent_list "PHQ PGL LEU DCI" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2G9 C7 C7 C 0 1 N N N 13.621 -41.642 10.892 4.996 -0.965 -0.759 C7 PHQ 1 2G9 C6 C6 C 0 1 Y N N 14.999 -41.193 11.400 6.310 -1.100 -0.035 C6 PHQ 2 2G9 C1 C1 C 0 1 Y N N 16.141 -41.305 10.596 7.462 -0.574 -0.590 C1 PHQ 3 2G9 C2 C2 C 0 1 Y N N 17.387 -40.897 11.079 8.668 -0.698 0.074 C2 PHQ 4 2G9 C3 C3 C 0 1 Y N N 17.502 -40.364 12.365 8.722 -1.347 1.293 C3 PHQ 5 2G9 C4 C4 C 0 1 Y N N 16.366 -40.248 13.173 7.570 -1.873 1.848 C4 PHQ 6 2G9 C5 C5 C 0 1 Y N N 15.120 -40.665 12.690 6.364 -1.745 1.186 C5 PHQ 7 2G9 C9 C9 C 0 1 N N N 12.854 -40.822 8.752 3.150 0.541 -0.913 C9 PHQ 8 2G9 O10 O10 O 0 1 N N N 13.698 -41.534 8.211 2.666 -0.229 -1.718 O10 PHQ 9 2G9 O8 O8 O 0 1 N N N 13.028 -40.627 10.065 4.344 0.268 -0.354 O8 PHQ 10 2G9 N11 N11 N 0 1 N N N 12.103 -39.952 8.048 2.493 1.669 -0.580 N PGL 11 2G9 C12 C12 C 0 1 N N N 12.006 -40.075 6.611 1.193 1.967 -1.188 C PGL 12 2G9 P13 P13 P 0 1 N N N 11.515 -38.443 5.958 -0.140 1.383 -0.090 P PGL 13 2G9 O14 O14 O 0 1 N N N 12.591 -37.457 6.239 -0.038 2.070 1.217 O1 PGL 14 2G9 O15 O15 O 0 1 N N N 10.178 -38.032 6.518 0.001 -0.206 0.127 O2 PGL 15 2G9 N16 N16 N 0 1 N N N 11.347 -38.778 4.240 -1.632 1.724 -0.789 N LEU 16 2G9 C17 C17 C 0 1 N N S 10.106 -38.362 3.591 -2.729 1.164 0.011 CA LEU 17 2G9 C22 C22 C 0 1 N N N 8.951 -39.302 3.871 -3.111 -0.187 -0.536 C LEU 18 2G9 O23 O23 O 0 1 N N N 7.793 -38.875 3.905 -2.526 -0.639 -1.499 O LEU 19 2G9 C18 C18 C 0 1 N N N 10.418 -38.383 2.084 -3.937 2.100 -0.052 CB LEU 20 2G9 C19 C19 C 0 1 N N N 9.289 -37.894 1.161 -3.580 3.438 0.597 CG LEU 21 2G9 C20 C20 C 0 1 N N N 9.142 -36.358 1.305 -4.735 4.424 0.402 CD1 LEU 22 2G9 C21 C21 C 0 1 N N N 9.554 -38.273 -0.313 -3.333 3.230 2.092 CD2 LEU 23 2G9 N24 N24 N 0 1 N N N 9.266 -40.607 4.051 -4.101 -0.894 0.043 N DCI 24 2G9 C25 C25 C 0 1 N N N 8.250 -41.619 4.308 -4.472 -2.208 -0.489 CA DCI 25 2G9 C26 C26 C 0 1 N N S 7.595 -42.137 3.003 -5.614 -2.792 0.345 CB DCI 26 2G9 C28 C28 C 0 1 N N N 6.558 -43.251 3.321 -5.918 -4.214 -0.132 CG1 DCI 27 2G9 C27 C27 C 0 1 N N N 8.647 -42.623 1.975 -6.862 -1.921 0.181 CG2 DCI 28 2G9 C29 C29 C 0 1 N N N 5.475 -42.848 4.359 -6.973 -4.843 0.780 CD1 DCI 29 2G9 H27 H27 H 0 1 N N N 12.964 -41.835 11.753 5.173 -0.945 -1.835 H27 PHQ 30 2G9 H28 H28 H 0 1 N N N 13.736 -42.565 10.304 4.356 -1.812 -0.512 H28 PHQ 31 2G9 H29 H29 H 0 1 N N N 16.058 -41.709 9.598 7.420 -0.066 -1.542 H29 PHQ 32 2G9 H30 H30 H 0 1 N N N 18.264 -40.994 10.456 9.568 -0.287 -0.359 H30 PHQ 33 2G9 H31 H31 H 0 1 N N N 18.465 -40.043 12.734 9.665 -1.445 1.812 H31 PHQ 34 2G9 H32 H32 H 0 1 N N N 16.450 -39.837 14.168 7.613 -2.381 2.800 H32 PHQ 35 2G9 H33 H33 H 0 1 N N N 14.246 -40.578 13.318 5.463 -2.152 1.622 H33 PHQ 36 2G9 H34 H34 H 0 1 N N N 11.612 -39.220 8.521 2.879 2.285 0.062 HN1 PGL 37 2G9 H25 H25 H 0 1 N N N 11.249 -40.829 6.348 1.098 3.043 -1.335 H1 PGL 38 2G9 H26 H26 H 0 1 N N N 12.979 -40.371 6.192 1.119 1.461 -2.151 H2 PGL 39 2G9 H24 H24 H 0 1 N N N 10.263 -37.196 6.961 -0.056 -0.721 -0.690 HO2 PGL 40 2G9 H1 H1 H 0 1 N N N 11.432 -39.767 4.118 -1.671 1.390 -1.740 H LEU 41 2G9 H2 H2 H 0 1 N N N 9.836 -37.340 3.895 -2.405 1.058 1.047 HA LEU 42 2G9 H3 H3 H 0 1 N N N 10.659 -39.419 1.803 -4.215 2.264 -1.094 HB2 LEU 43 2G9 H4 H4 H 0 1 N N N 11.296 -37.743 1.912 -4.774 1.649 0.481 HB3 LEU 44 2G9 H5 H5 H 0 1 N N N 8.347 -38.365 1.479 -2.679 3.839 0.132 HG LEU 45 2G9 H6 H6 H 0 1 N N N 8.954 -36.104 2.359 -5.636 4.023 0.867 HD11 LEU 46 2G9 H7 H7 H 0 1 N N N 10.068 -35.868 0.970 -4.480 5.377 0.865 HD12 LEU 47 2G9 H8 H8 H 0 1 N N N 8.300 -36.011 0.688 -4.911 4.572 -0.663 HD13 LEU 48 2G9 H9 H9 H 0 1 N N N 9.656 -39.365 -0.399 -2.511 2.529 2.231 HD21 LEU 49 2G9 H10 H10 H 0 1 N N N 8.713 -37.933 -0.936 -3.079 4.184 2.555 HD22 LEU 50 2G9 H11 H11 H 0 1 N N N 10.482 -37.790 -0.654 -4.235 2.830 2.557 HD23 LEU 51 2G9 H12 H12 H 0 1 N N N 10.226 -40.884 4.006 -4.568 -0.533 0.813 HN1 DCI 52 2G9 H13 H13 H 0 1 N N N 7.469 -41.182 4.947 -4.795 -2.102 -1.525 HA1 DCI 53 2G9 H14 H14 H 0 1 N N N 8.719 -42.467 4.830 -3.611 -2.875 -0.444 HA2 DCI 54 2G9 H15 H15 H 0 1 N N N 7.050 -41.297 2.549 -5.323 -2.815 1.395 HB DCI 55 2G9 H19 H19 H 0 1 N N N 6.051 -43.525 2.384 -6.294 -4.181 -1.154 HG11 DCI 56 2G9 H20 H20 H 0 1 N N N 7.101 -44.124 3.713 -5.007 -4.810 -0.099 HG12 DCI 57 2G9 H16 H16 H 0 1 N N N 9.364 -41.814 1.772 -6.645 -0.908 0.520 HG21 DCI 58 2G9 H17 H17 H 0 1 N N N 9.182 -43.493 2.382 -7.154 -1.898 -0.869 HG22 DCI 59 2G9 H18 H18 H 0 1 N N N 8.142 -42.908 1.040 -7.676 -2.338 0.775 HG23 DCI 60 2G9 H21 H21 H 0 1 N N N 4.789 -43.693 4.521 -6.597 -4.875 1.803 HD1 DCI 61 2G9 H22 H22 H 0 1 N N N 5.960 -42.582 5.310 -7.885 -4.246 0.747 HD2 DCI 62 2G9 H23 H23 H 0 1 N N N 4.909 -41.983 3.982 -7.189 -5.856 0.441 HD3 DCI 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2G9 C21 C19 SING N N 1 2G9 C19 C20 SING N N 2 2G9 C19 C18 SING N N 3 2G9 C27 C26 SING N N 4 2G9 C18 C17 SING N N 5 2G9 C26 C28 SING N N 6 2G9 C26 C25 SING N N 7 2G9 C28 C29 SING N N 8 2G9 C17 C22 SING N N 9 2G9 C17 N16 SING N N 10 2G9 C22 O23 DOUB N N 11 2G9 C22 N24 SING N N 12 2G9 N24 C25 SING N N 13 2G9 N16 P13 SING N N 14 2G9 P13 O14 DOUB N N 15 2G9 P13 O15 SING N N 16 2G9 P13 C12 SING N N 17 2G9 C12 N11 SING N N 18 2G9 N11 C9 SING N N 19 2G9 O10 C9 DOUB N N 20 2G9 C9 O8 SING N N 21 2G9 O8 C7 SING N N 22 2G9 C1 C2 DOUB Y N 23 2G9 C1 C6 SING Y N 24 2G9 C7 C6 SING N N 25 2G9 C2 C3 SING Y N 26 2G9 C6 C5 DOUB Y N 27 2G9 C3 C4 DOUB Y N 28 2G9 C5 C4 SING Y N 29 2G9 N16 H1 SING N N 30 2G9 C17 H2 SING N N 31 2G9 C18 H3 SING N N 32 2G9 C18 H4 SING N N 33 2G9 C19 H5 SING N N 34 2G9 C20 H6 SING N N 35 2G9 C20 H7 SING N N 36 2G9 C20 H8 SING N N 37 2G9 C21 H9 SING N N 38 2G9 C21 H10 SING N N 39 2G9 C21 H11 SING N N 40 2G9 N24 H12 SING N N 41 2G9 C25 H13 SING N N 42 2G9 C25 H14 SING N N 43 2G9 C26 H15 SING N N 44 2G9 C27 H16 SING N N 45 2G9 C27 H17 SING N N 46 2G9 C27 H18 SING N N 47 2G9 C28 H19 SING N N 48 2G9 C28 H20 SING N N 49 2G9 C29 H21 SING N N 50 2G9 C29 H22 SING N N 51 2G9 C29 H23 SING N N 52 2G9 O15 H24 SING N N 53 2G9 C12 H25 SING N N 54 2G9 C12 H26 SING N N 55 2G9 C7 H27 SING N N 56 2G9 C7 H28 SING N N 57 2G9 C1 H29 SING N N 58 2G9 C2 H30 SING N N 59 2G9 C3 H31 SING N N 60 2G9 C4 H32 SING N N 61 2G9 C5 H33 SING N N 62 2G9 N11 H34 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2G9 SMILES ACDLabs 12.01 "O=C(NCC(C)CC)C(NP(=O)(O)CNC(=O)OCc1ccccc1)CC(C)C" 2G9 InChI InChI 1.03 "InChI=1S/C20H34N3O5P/c1-5-16(4)12-21-19(24)18(11-15(2)3)23-29(26,27)14-22-20(25)28-13-17-9-7-6-8-10-17/h6-10,15-16,18H,5,11-14H2,1-4H3,(H,21,24)(H,22,25)(H2,23,26,27)/t16-,18-/m0/s1" 2G9 InChIKey InChI 1.03 BHKZMZPMRWFXJX-WMZOPIPTSA-N 2G9 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)CNC(=O)[C@H](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1" 2G9 SMILES CACTVS 3.385 "CC[CH](C)CNC(=O)[CH](CC(C)C)N[P](O)(=O)CNC(=O)OCc1ccccc1" 2G9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC[C@H](C)CNC(=O)[C@H](CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" 2G9 SMILES "OpenEye OEToolkits" 1.7.6 "CCC(C)CNC(=O)C(CC(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2G9 "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-[(2S)-2-methylbutyl]-L-leucinamide" 2G9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2S)-4-methyl-1-[[(2S)-2-methylbutyl]amino]-1-oxidanylidene-pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2G9 "Create component" 2013-10-11 RCSB 2G9 "Modify synonyms" 2013-11-12 RCSB 2G9 "Initial release" 2014-04-02 RCSB 2G9 "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2G9 _pdbx_chem_comp_synonyms.name "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-[(2S)-2-methylbutyl]-L-leucinamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##