data_2GZ # _chem_comp.id 2GZ _chem_comp.name "P-((((benzyloxy)carbonyl)amino)methyl)-N-((S)-4-methyl-1-(neopentylamino)-1-oxopentan-2-yl)phosphonamidic acid" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H34 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-(2,2-dimethylpropyl)-L-leucinamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-10-17 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 427.475 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2GZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4N66 _chem_comp.pdbx_subcomponent_list "PHQ PGL LEU NPT" _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2GZ C7 C7 C 0 1 N N N 13.578 -41.483 10.936 -5.289 -1.161 0.387 C7 PHQ 1 2GZ C6 C6 C 0 1 Y N N 14.954 -41.068 11.376 -6.617 -0.925 -0.285 C6 PHQ 2 2GZ C1 C1 C 0 1 Y N N 15.131 -40.488 12.637 -6.717 -0.994 -1.662 C1 PHQ 3 2GZ C2 C2 C 0 1 Y N N 16.398 -40.089 13.063 -7.935 -0.778 -2.278 C2 PHQ 4 2GZ C3 C3 C 0 1 Y N N 17.503 -40.271 12.234 -9.053 -0.491 -1.518 C3 PHQ 5 2GZ C4 C4 C 0 1 Y N N 17.339 -40.851 10.978 -8.953 -0.421 -0.141 C4 PHQ 6 2GZ C5 C5 C 0 1 Y N N 16.070 -41.242 10.543 -7.736 -0.644 0.476 C5 PHQ 7 2GZ C9 C9 C 0 1 N N N 12.401 -40.771 8.860 -3.368 0.063 1.099 C9 PHQ 8 2GZ O10 O10 O 0 1 N N N 11.795 -41.826 8.732 -2.914 -0.994 1.491 O10 PHQ 9 2GZ O8 O8 O 0 1 N N N 13.003 -40.491 10.051 -4.580 0.100 0.515 O8 PHQ 10 2GZ N11 N11 N 0 1 N N N 12.508 -39.862 7.849 -2.657 1.198 1.248 N PGL 11 2GZ C12 C12 C 0 1 N N N 11.862 -40.059 6.560 -1.337 1.158 1.883 C PGL 12 2GZ P13 P13 P 0 1 N N N 11.442 -38.394 5.925 -0.048 1.035 0.600 P PGL 13 2GZ O15 O15 O 0 1 N N N 12.572 -37.433 6.124 -0.129 2.211 -0.295 O1 PGL 14 2GZ O14 O14 O 0 1 N N N 10.078 -38.009 6.463 -0.272 -0.309 -0.258 O2 PGL 15 2GZ N16 N16 N 0 1 N N N 11.230 -38.810 4.257 1.467 0.989 1.330 N LEU 16 2GZ C17 C17 C 0 1 N N S 10.030 -38.343 3.524 2.525 0.774 0.333 CA LEU 17 2GZ C22 C22 C 0 1 N N N 8.804 -39.198 3.845 3.618 -0.072 0.935 C LEU 18 2GZ O23 O23 O 0 1 N N N 7.687 -38.706 3.878 3.659 -0.246 2.134 O LEU 19 2GZ C18 C18 C 0 1 N N N 10.368 -38.416 2.043 3.103 2.124 -0.095 CB LEU 20 2GZ C19 C19 C 0 1 N N N 9.281 -37.870 1.113 4.104 1.912 -1.233 CG LEU 21 2GZ C20 C20 C 0 1 N N N 9.153 -36.355 1.260 3.363 1.423 -2.479 CD1 LEU 22 2GZ C21 C21 C 0 1 N N N 9.631 -38.250 -0.329 4.809 3.234 -1.545 CD2 LEU 23 2GZ N24 N24 N 0 1 N N N 9.065 -40.538 4.057 4.548 -0.636 0.139 N NPT 24 2GZ C25 C25 C 0 1 N N N 8.039 -41.516 4.384 5.545 -1.546 0.709 C1 NPT 25 2GZ C26 C26 C 0 1 N N N 7.655 -42.501 3.266 6.475 -2.043 -0.399 C2 NPT 26 2GZ C27 C27 C 0 1 N N N 7.119 -41.663 2.107 7.516 -2.993 0.196 C3 NPT 27 2GZ C28 C28 C 0 1 N N N 8.844 -43.314 2.753 5.656 -2.783 -1.459 C4 NPT 28 2GZ C29 C29 C 0 1 N N N 6.525 -43.427 3.716 7.183 -0.849 -1.044 C5 NPT 29 2GZ H27 H27 H 0 1 N N N 12.934 -41.594 11.821 -5.453 -1.587 1.377 H27 PHQ 30 2GZ H28 H28 H 0 1 N N N 13.643 -42.445 10.407 -4.696 -1.852 -0.212 H28 PHQ 31 2GZ H29 H29 H 0 1 N N N 14.279 -40.348 13.286 -5.843 -1.218 -2.256 H29 PHQ 32 2GZ H30 H30 H 0 1 N N N 16.523 -39.638 14.037 -8.013 -0.832 -3.354 H30 PHQ 33 2GZ H31 H31 H 0 1 N N N 18.484 -39.963 12.564 -10.005 -0.322 -2.000 H31 PHQ 34 2GZ H32 H32 H 0 1 N N N 18.196 -40.999 10.338 -9.827 -0.197 0.453 H32 PHQ 35 2GZ H33 H33 H 0 1 N N N 15.948 -41.679 9.563 -7.658 -0.589 1.552 H33 PHQ 36 2GZ H34 H34 H 0 1 N N N 13.048 -39.033 7.998 -3.019 2.042 0.935 HN1 PGL 37 2GZ H25 H25 H 0 1 N N N 10.949 -40.660 6.681 -1.186 2.068 2.464 H1 PGL 38 2GZ H26 H26 H 0 1 N N N 12.547 -40.568 5.866 -1.278 0.292 2.543 H2 PGL 39 2GZ H24 H24 H 0 1 N N N 10.130 -37.157 6.879 -0.232 -1.121 0.266 HO2 PGL 40 2GZ H1 H1 H 0 1 N N N 11.229 -39.809 4.206 1.501 0.283 2.050 H LEU 41 2GZ H2 H2 H 0 1 N N N 9.817 -37.298 3.793 2.108 0.265 -0.535 HA LEU 42 2GZ H3 H3 H 0 1 N N N 10.544 -39.470 1.783 2.297 2.773 -0.437 HB2 LEU 43 2GZ H4 H4 H 0 1 N N N 11.288 -37.838 1.872 3.609 2.588 0.752 HB3 LEU 44 2GZ H5 H5 H 0 1 N N N 8.320 -38.335 1.379 4.842 1.168 -0.934 HG LEU 45 2GZ H6 H6 H 0 1 N N N 8.902 -36.107 2.302 4.084 1.202 -3.266 HD11 LEU 46 2GZ H7 H7 H 0 1 N N N 10.107 -35.879 0.990 2.801 0.522 -2.237 HD12 LEU 47 2GZ H8 H8 H 0 1 N N N 8.358 -35.988 0.594 2.678 2.199 -2.822 HD13 LEU 48 2GZ H9 H9 H 0 1 N N N 9.718 -39.344 -0.410 4.071 3.978 -1.844 HD21 LEU 49 2GZ H10 H10 H 0 1 N N N 8.839 -37.894 -1.004 5.337 3.582 -0.657 HD22 LEU 50 2GZ H11 H11 H 0 1 N N N 10.588 -37.785 -0.609 5.522 3.083 -2.355 HD23 LEU 51 2GZ H12 H12 H 0 1 N N N 10.011 -40.853 3.982 4.557 -0.440 -0.811 HN1 NPT 52 2GZ H13 H13 H 0 1 N N N 7.131 -40.966 4.672 6.128 -1.019 1.464 H11 NPT 53 2GZ H14 H14 H 0 1 N N N 8.398 -42.105 5.241 5.040 -2.396 1.168 H12 NPT 54 2GZ H15 H15 H 0 1 N N N 6.261 -41.067 2.451 8.100 -2.465 0.951 H31 NPT 55 2GZ H16 H16 H 0 1 N N N 7.910 -40.990 1.744 7.012 -3.843 0.655 H32 NPT 56 2GZ H17 H17 H 0 1 N N N 6.800 -42.328 1.291 8.179 -3.346 -0.594 H33 NPT 57 2GZ H18 H18 H 0 1 N N N 9.249 -43.928 3.571 6.319 -3.136 -2.249 H41 NPT 58 2GZ H19 H19 H 0 1 N N N 8.514 -43.968 1.933 5.152 -3.633 -1.000 H42 NPT 59 2GZ H20 H20 H 0 1 N N N 9.624 -42.631 2.386 4.914 -2.106 -1.883 H43 NPT 60 2GZ H21 H21 H 0 1 N N N 6.872 -44.050 4.553 7.766 -0.322 -0.289 H51 NPT 61 2GZ H22 H22 H 0 1 N N N 5.664 -42.824 4.040 7.846 -1.203 -1.834 H52 NPT 62 2GZ H23 H23 H 0 1 N N N 6.225 -44.073 2.878 6.441 -0.172 -1.468 H53 NPT 63 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2GZ C21 C19 SING N N 1 2GZ C19 C20 SING N N 2 2GZ C19 C18 SING N N 3 2GZ C18 C17 SING N N 4 2GZ C27 C26 SING N N 5 2GZ C28 C26 SING N N 6 2GZ C26 C29 SING N N 7 2GZ C26 C25 SING N N 8 2GZ C17 C22 SING N N 9 2GZ C17 N16 SING N N 10 2GZ C22 O23 DOUB N N 11 2GZ C22 N24 SING N N 12 2GZ N24 C25 SING N N 13 2GZ N16 P13 SING N N 14 2GZ P13 O15 DOUB N N 15 2GZ P13 O14 SING N N 16 2GZ P13 C12 SING N N 17 2GZ C12 N11 SING N N 18 2GZ N11 C9 SING N N 19 2GZ O10 C9 DOUB N N 20 2GZ C9 O8 SING N N 21 2GZ O8 C7 SING N N 22 2GZ C5 C4 DOUB Y N 23 2GZ C5 C6 SING Y N 24 2GZ C7 C6 SING N N 25 2GZ C4 C3 SING Y N 26 2GZ C6 C1 DOUB Y N 27 2GZ C3 C2 DOUB Y N 28 2GZ C1 C2 SING Y N 29 2GZ N16 H1 SING N N 30 2GZ C17 H2 SING N N 31 2GZ C18 H3 SING N N 32 2GZ C18 H4 SING N N 33 2GZ C19 H5 SING N N 34 2GZ C20 H6 SING N N 35 2GZ C20 H7 SING N N 36 2GZ C20 H8 SING N N 37 2GZ C21 H9 SING N N 38 2GZ C21 H10 SING N N 39 2GZ C21 H11 SING N N 40 2GZ N24 H12 SING N N 41 2GZ C25 H13 SING N N 42 2GZ C25 H14 SING N N 43 2GZ C27 H15 SING N N 44 2GZ C27 H16 SING N N 45 2GZ C27 H17 SING N N 46 2GZ C28 H18 SING N N 47 2GZ C28 H19 SING N N 48 2GZ C28 H20 SING N N 49 2GZ C29 H21 SING N N 50 2GZ C29 H22 SING N N 51 2GZ C29 H23 SING N N 52 2GZ O14 H24 SING N N 53 2GZ C12 H25 SING N N 54 2GZ C12 H26 SING N N 55 2GZ C7 H27 SING N N 56 2GZ C7 H28 SING N N 57 2GZ C1 H29 SING N N 58 2GZ C2 H30 SING N N 59 2GZ C3 H31 SING N N 60 2GZ C4 H32 SING N N 61 2GZ C5 H33 SING N N 62 2GZ N11 H34 SING N N 63 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2GZ SMILES ACDLabs 12.01 "O=C(NCC(C)(C)C)C(NP(=O)(O)CNC(=O)OCc1ccccc1)CC(C)C" 2GZ InChI InChI 1.03 "InChI=1S/C20H34N3O5P/c1-15(2)11-17(18(24)21-13-20(3,4)5)23-29(26,27)14-22-19(25)28-12-16-9-7-6-8-10-16/h6-10,15,17H,11-14H2,1-5H3,(H,21,24)(H,22,25)(H2,23,26,27)/t17-/m0/s1" 2GZ InChIKey InChI 1.03 GRURGYQNFDMDDQ-KRWDZBQOSA-N 2GZ SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NCC(C)(C)C" 2GZ SMILES CACTVS 3.385 "CC(C)C[CH](N[P](O)(=O)CNC(=O)OCc1ccccc1)C(=O)NCC(C)(C)C" 2GZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H](C(=O)NCC(C)(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" 2GZ SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(=O)NCC(C)(C)C)NP(=O)(CNC(=O)OCc1ccccc1)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2GZ "SYSTEMATIC NAME" ACDLabs 12.01 "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-(2,2-dimethylpropyl)-L-leucinamide" 2GZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[(2S)-1-(2,2-dimethylpropylamino)-4-methyl-1-oxidanylidene-pentan-2-yl]-(phenylmethoxycarbonylaminomethyl)phosphonamidic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2GZ "Create component" 2013-10-17 RCSB 2GZ "Modify synonyms" 2013-11-12 RCSB 2GZ "Initial release" 2014-04-02 RCSB 2GZ "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2GZ _pdbx_chem_comp_synonyms.name "N~2~-[(S)-({[(benzyloxy)carbonyl]amino}methyl)(hydroxy)phosphoryl]-N-(2,2-dimethylpropyl)-L-leucinamide" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##