data_2I7 # _chem_comp.id 2I7 _chem_comp.name "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(3-{[3-methyl-5-(pyrimidin-2-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H30 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-28 _chem_comp.pdbx_modified_date 2022-07-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 450.530 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2I7 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7R6J _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2I7 N1 N1 N 0 1 N N N -35.729 -30.109 -68.977 4.082 -0.553 -0.333 N1 2I7 1 2I7 N3 N2 N 0 1 Y N N -43.375 -28.990 -66.708 -7.297 0.553 -0.813 N3 2I7 2 2I7 C4 C1 C 0 1 N N N -36.085 -31.553 -69.105 3.124 0.552 -0.468 C4 2I7 3 2I7 C5 C2 C 0 1 N N R -34.438 -30.035 -68.247 5.283 -0.316 -1.145 C5 2I7 4 2I7 C6 C3 C 0 1 N N N -33.967 -28.546 -68.205 6.232 -1.508 -1.010 C6 2I7 5 2I7 C7 C4 C 0 1 N N N -36.761 -29.404 -68.576 3.457 -1.836 -0.680 C7 2I7 6 2I7 C8 C5 C 0 1 Y N N -37.296 -29.882 -67.118 2.329 -2.120 0.278 C8 2I7 7 2I7 C10 C6 C 0 1 Y N N -38.633 -31.380 -65.676 0.015 -1.944 0.867 C10 2I7 8 2I7 C13 C7 C 0 1 Y N N -41.526 -31.293 -62.523 -2.982 1.802 1.464 C13 2I7 9 2I7 C15 C8 C 0 1 N N N -42.673 -29.960 -60.622 -4.386 3.830 1.878 C15 2I7 10 2I7 C17 C9 C 0 1 Y N N -42.510 -29.513 -64.444 -5.042 0.568 0.076 C17 2I7 11 2I7 C20 C10 C 0 1 Y N N -44.164 -26.871 -67.375 -8.139 -1.271 -2.006 C20 2I7 12 2I7 C21 C11 C 0 1 Y N N -43.841 -26.418 -66.092 -6.922 -1.913 -1.834 C21 2I7 13 2I7 C22 C12 C 0 1 Y N N -41.714 -30.592 -64.855 -3.828 -0.093 0.249 C22 2I7 14 2I7 C24 C13 C 0 1 Y N N -37.219 -29.764 -64.652 1.539 -3.074 2.327 C24 2I7 15 2I7 C1 C14 C 0 1 N N R -33.347 -30.845 -69.055 5.986 0.954 -0.659 C1 2I7 16 2I7 C11 C15 C 0 1 N N N -39.661 -32.566 -65.611 -1.380 -1.467 0.551 C11 2I7 17 2I7 C12 C16 C 0 1 Y N N -41.216 -31.493 -63.877 -2.797 0.529 0.939 C12 2I7 18 2I7 C14 C17 C 0 1 Y N N -42.319 -30.205 -62.126 -4.191 2.452 1.301 C14 2I7 19 2I7 C16 C18 C 0 1 Y N N -42.813 -29.322 -63.098 -5.219 1.843 0.611 C16 2I7 20 2I7 C18 C19 C 0 1 Y N N -43.094 -28.534 -65.497 -6.146 -0.088 -0.666 C18 2I7 21 2I7 C19 C20 C 0 1 Y N N -43.921 -28.220 -67.671 -8.302 -0.003 -1.469 C19 2I7 22 2I7 C2 C21 C 0 1 N N R -33.719 -32.251 -69.278 5.025 2.140 -0.777 C2 2I7 23 2I7 C23 C22 C 0 1 Y N N -38.111 -30.804 -64.532 0.258 -2.642 2.034 C23 2I7 24 2I7 C25 C23 C 0 1 Y N N -36.768 -29.321 -65.954 2.574 -2.813 1.449 C25 2I7 25 2I7 C3 C24 C 0 1 N N S -35.003 -32.312 -69.975 3.762 1.848 0.038 C3 2I7 26 2I7 C9 C25 C 0 1 Y N N -38.209 -30.914 -66.965 1.050 -1.684 -0.012 C9 2I7 27 2I7 N2 N3 N 0 1 N N N -40.350 -32.627 -64.310 -1.574 -0.125 1.105 N2 2I7 28 2I7 N4 N4 N 0 1 Y N N -43.327 -27.257 -65.170 -5.958 -1.301 -1.167 N4 2I7 29 2I7 O1 O1 O 0 1 N N N -32.017 -30.767 -68.486 7.143 1.195 -1.462 O1 2I7 30 2I7 O2 O2 O 0 1 N N N -32.780 -32.890 -70.222 5.658 3.319 -0.273 O2 2I7 31 2I7 O3 O3 O 0 1 N N N -35.343 -33.679 -70.249 2.837 2.926 -0.113 O3 2I7 32 2I7 O4 O4 O 0 1 N N N -34.172 -28.015 -69.457 6.669 -1.617 0.346 O4 2I7 33 2I7 H2 H2 H 0 1 N N N -37.068 -31.642 -69.590 2.848 0.668 -1.516 H2 2I7 34 2I7 H3 H3 H 0 1 N N N -36.128 -32.006 -68.104 2.232 0.333 0.119 H3 2I7 35 2I7 H4 H4 H 0 1 N N N -34.529 -30.437 -67.227 4.997 -0.195 -2.190 H4 2I7 36 2I7 H5 H5 H 0 1 N N N -32.899 -28.496 -67.946 5.712 -2.421 -1.298 H5 2I7 37 2I7 H6 H6 H 0 1 N N N -34.552 -27.987 -67.459 7.095 -1.360 -1.659 H6 2I7 38 2I7 H7 H7 H 0 1 N N N -36.467 -28.346 -68.517 3.067 -1.788 -1.697 H7 2I7 39 2I7 H8 H8 H 0 1 N N N -37.575 -29.518 -69.308 4.200 -2.631 -0.613 H8 2I7 40 2I7 H9 H9 H 0 1 N N N -41.151 -31.982 -61.780 -2.180 2.283 2.005 H9 2I7 41 2I7 H10 H10 H 0 1 N N N -43.606 -30.488 -60.374 -4.091 4.578 1.141 H10 2I7 42 2I7 H11 H11 H 0 1 N N N -41.858 -30.338 -59.987 -5.435 3.970 2.138 H11 2I7 43 2I7 H12 H12 H 0 1 N N N -42.804 -28.882 -60.447 -3.772 3.940 2.772 H12 2I7 44 2I7 H13 H13 H 0 1 N N N -44.586 -26.205 -68.113 -8.943 -1.748 -2.547 H13 2I7 45 2I7 H14 H14 H 0 1 N N N -44.006 -25.382 -65.836 -6.763 -2.901 -2.239 H14 2I7 46 2I7 H15 H15 H 0 1 N N N -41.483 -30.736 -65.900 -3.686 -1.081 -0.163 H15 2I7 47 2I7 H16 H16 H 0 1 N N N -36.851 -29.272 -63.764 1.730 -3.619 3.240 H16 2I7 48 2I7 H17 H17 H 0 1 N N N -33.301 -30.369 -70.046 6.285 0.829 0.382 H17 2I7 49 2I7 H18 H18 H 0 1 N N N -40.411 -32.430 -66.404 -1.518 -1.438 -0.530 H18 2I7 50 2I7 H19 H19 H 0 1 N N N -39.123 -33.512 -65.773 -2.106 -2.151 0.991 H19 2I7 51 2I7 H20 H20 H 0 1 N N N -43.432 -28.489 -62.801 -6.159 2.358 0.478 H20 2I7 52 2I7 H21 H21 H 0 1 N N N -44.164 -28.630 -68.640 -9.237 0.525 -1.585 H21 2I7 53 2I7 H22 H22 H 0 1 N N N -33.757 -32.804 -68.328 4.757 2.290 -1.823 H22 2I7 54 2I7 H23 H23 H 0 1 N N N -38.400 -31.166 -63.557 -0.550 -2.846 2.720 H23 2I7 55 2I7 H24 H24 H 0 1 N N N -36.016 -28.549 -66.026 3.574 -3.151 1.677 H24 2I7 56 2I7 H25 H25 H 0 1 N N N -34.912 -31.768 -70.927 4.025 1.737 1.089 H25 2I7 57 2I7 H26 H26 H 0 1 N N N -38.616 -31.384 -67.848 0.859 -1.138 -0.924 H26 2I7 58 2I7 H27 H27 H 0 1 N N N -40.928 -33.443 -64.326 -0.854 0.309 1.587 H27 2I7 59 2I7 H28 H28 H 0 1 N N N -31.785 -29.857 -68.345 7.639 1.986 -1.210 H28 2I7 60 2I7 H29 H29 H 0 1 N N N -31.907 -32.895 -69.847 5.105 4.111 -0.317 H29 2I7 61 2I7 H30 H30 H 0 1 N N N -36.178 -33.714 -70.702 2.012 2.808 0.377 H30 2I7 62 2I7 H31 H31 H 0 1 N N N -33.895 -27.106 -69.465 7.276 -2.353 0.506 H31 2I7 63 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2I7 O3 C3 SING N N 1 2I7 O2 C2 SING N N 2 2I7 C3 C2 SING N N 3 2I7 C3 C4 SING N N 4 2I7 O4 C6 SING N N 5 2I7 C2 C1 SING N N 6 2I7 C4 N1 SING N N 7 2I7 C1 O1 SING N N 8 2I7 C1 C5 SING N N 9 2I7 N1 C7 SING N N 10 2I7 N1 C5 SING N N 11 2I7 C7 C8 SING N N 12 2I7 C5 C6 SING N N 13 2I7 C19 C20 DOUB Y N 14 2I7 C19 N3 SING Y N 15 2I7 C20 C21 SING Y N 16 2I7 C8 C9 DOUB Y N 17 2I7 C8 C25 SING Y N 18 2I7 C9 C10 SING Y N 19 2I7 N3 C18 DOUB Y N 20 2I7 C21 N4 DOUB Y N 21 2I7 C25 C24 DOUB Y N 22 2I7 C10 C11 SING N N 23 2I7 C10 C23 DOUB Y N 24 2I7 C11 N2 SING N N 25 2I7 C18 N4 SING Y N 26 2I7 C18 C17 SING N N 27 2I7 C22 C17 DOUB Y N 28 2I7 C22 C12 SING Y N 29 2I7 C24 C23 SING Y N 30 2I7 C17 C16 SING Y N 31 2I7 N2 C12 SING N N 32 2I7 C12 C13 DOUB Y N 33 2I7 C16 C14 DOUB Y N 34 2I7 C13 C14 SING Y N 35 2I7 C14 C15 SING N N 36 2I7 C4 H2 SING N N 37 2I7 C4 H3 SING N N 38 2I7 C5 H4 SING N N 39 2I7 C6 H5 SING N N 40 2I7 C6 H6 SING N N 41 2I7 C7 H7 SING N N 42 2I7 C7 H8 SING N N 43 2I7 C13 H9 SING N N 44 2I7 C15 H10 SING N N 45 2I7 C15 H11 SING N N 46 2I7 C15 H12 SING N N 47 2I7 C20 H13 SING N N 48 2I7 C21 H14 SING N N 49 2I7 C22 H15 SING N N 50 2I7 C24 H16 SING N N 51 2I7 C1 H17 SING N N 52 2I7 C11 H18 SING N N 53 2I7 C11 H19 SING N N 54 2I7 C16 H20 SING N N 55 2I7 C19 H21 SING N N 56 2I7 C2 H22 SING N N 57 2I7 C23 H23 SING N N 58 2I7 C25 H24 SING N N 59 2I7 C3 H25 SING N N 60 2I7 C9 H26 SING N N 61 2I7 N2 H27 SING N N 62 2I7 O1 H28 SING N N 63 2I7 O2 H29 SING N N 64 2I7 O3 H30 SING N N 65 2I7 O4 H31 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2I7 SMILES ACDLabs 12.01 "Cc1cc(cc(c1)NCc1cc(CN2CC(O)C(O)C(O)C2CO)ccc1)c1ncccn1" 2I7 InChI InChI 1.03 "InChI=1S/C25H30N4O4/c1-16-8-19(25-26-6-3-7-27-25)11-20(9-16)28-12-17-4-2-5-18(10-17)13-29-14-22(31)24(33)23(32)21(29)15-30/h2-11,21-24,28,30-33H,12-15H2,1H3/t21-,22+,23-,24-/m1/s1" 2I7 InChIKey InChI 1.03 MCCXVNXVINRCAD-UEQSERJNSA-N 2I7 SMILES_CANONICAL CACTVS 3.385 "Cc1cc(NCc2cccc(CN3C[C@H](O)[C@@H](O)[C@H](O)[C@H]3CO)c2)cc(c1)c4ncccn4" 2I7 SMILES CACTVS 3.385 "Cc1cc(NCc2cccc(CN3C[CH](O)[CH](O)[CH](O)[CH]3CO)c2)cc(c1)c4ncccn4" 2I7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(c2)CN3C[C@@H]([C@H]([C@@H]([C@H]3CO)O)O)O)c4ncccn4" 2I7 SMILES "OpenEye OEToolkits" 2.0.7 "Cc1cc(cc(c1)NCc2cccc(c2)CN3CC(C(C(C3CO)O)O)O)c4ncccn4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2I7 "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5S)-2-(hydroxymethyl)-1-[(3-{[3-methyl-5-(pyrimidin-2-yl)anilino]methyl}phenyl)methyl]piperidine-3,4,5-triol" 2I7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},3~{R},4~{R},5~{S})-2-(hydroxymethyl)-1-[[3-[[(3-methyl-5-pyrimidin-2-yl-phenyl)amino]methyl]phenyl]methyl]piperidine-3,4,5-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2I7 "Create component" 2021-06-28 RCSB 2I7 "Initial release" 2022-07-06 RCSB #