data_2IA # _chem_comp.id 2IA _chem_comp.name ;2'-deoxy-2'-iodoadenosine 5'-(dihydrogen phosphate) ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H13 I N5 O6 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-06-10 _chem_comp.pdbx_modified_date 2011-08-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 457.118 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2IA _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3S2H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2IA I I I 0 1 N N N 7.199 -40.860 41.983 -1.968 -2.292 -0.221 I 2IA 1 2IA P P P 0 1 N N N 2.799 -35.686 44.179 5.547 0.810 0.003 P 2IA 2 2IA N1 N1 N 0 1 Y N N 11.180 -36.681 45.536 -4.932 2.260 0.462 N1 2IA 3 2IA C2 C2 C 0 1 Y N N 10.953 -37.688 44.666 -4.570 1.090 0.955 C2 2IA 4 2IA N3 N3 N 0 1 Y N N 9.719 -37.905 44.167 -3.326 0.661 0.916 N3 2IA 5 2IA C4 C4 C 0 1 Y N N 8.666 -37.108 44.530 -2.370 1.405 0.368 C4 2IA 6 2IA C5 C5 C 0 1 Y N N 8.877 -36.062 45.425 -2.705 2.658 -0.171 C5 2IA 7 2IA C6 C6 C 0 1 Y N N 10.169 -35.856 45.932 -4.046 3.072 -0.105 C6 2IA 8 2IA N6 N6 N 0 1 N N N 10.419 -34.850 46.807 -4.435 4.296 -0.619 N6 2IA 9 2IA N7 N7 N 0 1 Y N N 7.689 -35.447 45.608 -1.563 3.201 -0.658 N7 2IA 10 2IA C8 C8 C 0 1 Y N N 6.768 -36.093 44.853 -0.573 2.381 -0.457 C8 2IA 11 2IA N9 N9 N 0 1 Y N N 7.366 -37.109 44.191 -1.020 1.257 0.173 N9 2IA 12 2IA "C1'" "C1'" C 0 1 N N R 6.765 -38.113 43.242 -0.207 0.105 0.570 "C1'" 2IA 13 2IA O2P O2P O 0 1 N N N 1.395 -35.210 44.154 5.384 1.752 -1.292 O2P 2IA 14 2IA "C2'" "C2'" C 0 1 N N R 6.968 -39.548 43.714 -0.260 -1.000 -0.516 "C2'" 2IA 15 2IA O3P O3P O 0 1 N Y N 3.708 -35.195 45.244 6.281 1.633 1.176 O3P 2IA 16 2IA "C3'" "C3'" C 0 1 N N R 5.680 -39.824 44.497 1.062 -1.766 -0.265 "C3'" 2IA 17 2IA "O3'" "O3'" O 0 1 N N N 5.255 -41.168 44.525 0.822 -2.930 0.528 "O3'" 2IA 18 2IA "C4'" "C4'" C 0 1 N N R 4.637 -38.850 43.962 1.940 -0.760 0.505 "C4'" 2IA 19 2IA "O4'" "O4'" O 0 1 N N N 5.361 -37.897 43.138 1.191 0.461 0.620 "O4'" 2IA 20 2IA "C5'" "C5'" C 0 1 N N N 3.721 -38.135 44.944 3.237 -0.505 -0.266 "C5'" 2IA 21 2IA "O5'" "O5'" O 0 1 N N N 2.786 -37.292 44.238 4.094 0.336 0.508 "O5'" 2IA 22 2IA H2 H2 H 0 1 N N N 11.770 -38.328 44.366 -5.322 0.461 1.407 H2 2IA 23 2IA HN6 HN6 H 0 1 N N N 11.387 -34.858 47.057 -5.364 4.570 -0.568 HN6 2IA 24 2IA HN6A HN6A H 0 0 N N N 10.192 -33.974 46.381 -3.779 4.880 -1.031 HN6A 2IA 25 2IA H8 H8 H 0 1 N N N 5.721 -35.837 44.790 0.451 2.562 -0.747 H8 2IA 26 2IA "H1'" "H1'" H 0 1 N N N 7.271 -37.975 42.275 -0.541 -0.286 1.531 "H1'" 2IA 27 2IA HO2P HO2P H 0 0 N N N 1.264 -34.649 43.399 4.862 2.550 -1.135 HO2P 2IA 28 2IA "H2'" H2* H 0 1 N N N 7.867 -39.714 44.326 -0.273 -0.563 -1.515 H2* 2IA 29 2IA HO3P HO3P H 0 0 N Y N 4.458 -34.766 44.848 7.164 1.950 0.941 HO3P 2IA 30 2IA "H3'" H3* H 0 1 N N N 5.865 -39.654 45.568 1.530 -2.039 -1.210 H3* 2IA 31 2IA "HO3'" HO3* H 0 0 N N N 4.454 -41.237 45.031 0.227 -3.571 0.116 HO3* 2IA 32 2IA "H5'" H5* H 0 1 N N N 3.164 -38.882 45.528 3.737 -1.454 -0.460 H5* 2IA 33 2IA "H5'A" H5*A H 0 0 N N N 4.329 -37.514 45.618 3.006 -0.016 -1.213 H5*A 2IA 34 2IA O1P O1P O 0 1 N N N 3.772 -35.114 42.881 6.358 -0.377 -0.349 O1P 2IA 35 2IA H1 H1 H 0 1 N N N 3.904 -39.465 43.420 2.169 -1.151 1.496 H1 2IA 36 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2IA I "C2'" SING N N 1 2IA P "O5'" SING N N 2 2IA P O3P SING N N 3 2IA N1 C6 SING Y N 4 2IA C2 N1 DOUB Y N 5 2IA C2 H2 SING N N 6 2IA N3 C2 SING Y N 7 2IA N3 C4 DOUB Y N 8 2IA C4 C5 SING Y N 9 2IA C5 N7 SING Y N 10 2IA C5 C6 DOUB Y N 11 2IA C6 N6 SING N N 12 2IA N6 HN6 SING N N 13 2IA N6 HN6A SING N N 14 2IA C8 N7 DOUB Y N 15 2IA C8 H8 SING N N 16 2IA N9 C4 SING Y N 17 2IA N9 C8 SING Y N 18 2IA "C1'" N9 SING N N 19 2IA "C1'" "C2'" SING N N 20 2IA "C1'" "H1'" SING N N 21 2IA O2P P SING N N 22 2IA O2P HO2P SING N N 23 2IA "C2'" "C3'" SING N N 24 2IA "C2'" "H2'" SING N N 25 2IA O3P HO3P SING N N 26 2IA "C3'" "O3'" SING N N 27 2IA "C3'" "H3'" SING N N 28 2IA "O3'" "HO3'" SING N N 29 2IA "C4'" "C3'" SING N N 30 2IA "C4'" "C5'" SING N N 31 2IA "O4'" "C1'" SING N N 32 2IA "O4'" "C4'" SING N N 33 2IA "C5'" "H5'" SING N N 34 2IA "C5'" "H5'A" SING N N 35 2IA "O5'" "C5'" SING N N 36 2IA P O1P DOUB N N 37 2IA "C4'" H1 SING N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2IA SMILES ACDLabs 12.01 "O=P(O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(I)C3O" 2IA InChI InChI 1.03 "InChI=1S/C10H13IN5O6P/c11-5-7(17)4(1-21-23(18,19)20)22-10(5)16-3-15-6-8(12)13-2-14-9(6)16/h2-5,7,10,17H,1H2,(H2,12,13,14)(H2,18,19,20)/t4?,5-,7-,10-/m1/s1" 2IA InChIKey InChI 1.03 FDMHBBNFOIOUSP-HNEOXWICSA-N 2IA SMILES_CANONICAL CACTVS 3.370 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]3I" 2IA SMILES CACTVS 3.370 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(O)=O)[CH](O)[CH]3I" 2IA SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)I)N" 2IA SMILES "OpenEye OEToolkits" 1.7.2 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)O)O)I)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2IA "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-2'-iodoadenosine 5'-(dihydrogen phosphate) ; 2IA "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R,3R,4R,5R)-5-(6-aminopurin-9-yl)-4-iodanyl-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2IA "Create component" 2011-06-10 RCSB #