data_2II # _chem_comp.id 2II _chem_comp.name "2-methyl-5-[[3-[1-[(3~{S})-1-propanoylpyrrolidin-3-yl]-4-pyridin-4-yl-pyrazol-3-yl]phenoxy]methyl]-3~{H}-isoindol-1-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H31 N5 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-11 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 521.610 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2II _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PO3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2II C1 C1 C 0 1 N N N N N N 6.088 20.128 -0.911 -7.635 2.365 -1.191 C1 2II 1 2II C2 C2 C 0 1 Y N N N N N 5.082 19.056 -1.210 -6.889 1.195 -0.600 C2 2II 2 2II C3 C3 C 0 1 Y N N N N N 4.432 18.734 -2.397 -5.817 0.447 -1.029 C3 2II 3 2II C7 C4 C 0 1 Y N N N N N 4.805 18.346 -0.054 -7.503 0.911 0.621 C7 2II 4 2II C8 C5 C 0 1 N N N N N N 5.600 18.926 1.060 -8.611 1.866 0.816 C8 2II 5 2II C9 C6 C 0 1 N N N N N N 2.827 17.375 -3.764 -4.167 -1.411 -0.719 C9 2II 6 2II C10 C7 C 0 1 Y N N N N N 3.058 16.135 -5.844 -1.794 -1.439 -0.586 C10 2II 7 2II C11 C8 C 0 1 Y N N N N N 3.814 15.282 -6.635 -1.821 -2.592 -1.357 C11 2II 8 2II C12 C9 C 0 1 Y N N N N N 3.229 14.687 -7.741 -0.642 -3.225 -1.704 C12 2II 9 2II C13 C10 C 0 1 Y N N N N N 1.922 14.980 -8.081 0.569 -2.714 -1.286 C13 2II 10 2II C14 C11 C 0 1 Y N N N N N 1.158 15.822 -7.280 0.606 -1.555 -0.511 C14 2II 11 2II C15 C12 C 0 1 Y N N N N N 1.735 16.408 -6.157 -0.582 -0.915 -0.166 C15 2II 12 2II C16 C13 C 0 1 Y N N N N N -0.229 16.167 -7.648 1.907 -1.003 -0.059 C16 2II 13 2II C19 C14 C 0 1 N N S N N N -2.598 18.741 -8.277 4.245 1.620 0.788 C19 2II 14 2II C20 C15 C 0 1 N N N N N N -2.114 19.429 -9.561 5.297 1.424 1.912 C20 2II 15 2II C21 C16 C 0 1 N N N N N N -2.842 18.634 -10.632 6.347 2.510 1.596 C21 2II 16 2II C22 C17 C 0 1 N N N N N N -4.080 18.530 -8.571 5.141 2.017 -0.412 C22 2II 17 2II C24 C18 C 0 1 N N N N N N -6.589 18.386 -10.146 7.992 4.563 0.239 C24 2II 18 2II C27 C19 C 0 1 Y N N N N N -0.713 13.102 -7.071 2.204 -4.031 0.926 C27 2II 19 2II C30 C20 C 0 1 Y N N N N N -2.234 13.164 -8.898 4.245 -3.869 -0.326 C30 2II 20 2II O2 O1 O 0 1 N N N N N N -5.157 17.687 -11.893 6.728 3.978 -1.666 O2 2II 21 2II C23 C21 C 0 1 N N N N N N -5.244 18.118 -10.761 6.931 3.777 -0.487 C23 2II 22 2II C25 C22 C 0 1 N N N N N N -7.455 17.169 -10.155 8.660 5.538 -0.733 C25 2II 23 2II N3 N1 N 0 1 N N N N N N -4.153 18.389 -10.023 6.207 2.852 0.173 N3 2II 24 2II N1 N2 N 0 1 Y N N N N N -1.872 17.439 -8.086 3.527 0.373 0.518 N1 2II 25 2II C18 C23 C 0 1 Y N N N N N -2.346 16.193 -8.302 4.029 -0.871 0.654 C18 2II 26 2II C17 C24 C 0 1 Y N N N N N -1.315 15.326 -8.044 3.053 -1.756 0.303 C17 2II 27 2II C26 C25 C 0 1 Y N N N N N -1.418 13.846 -8.009 3.169 -3.234 0.301 C26 2II 28 2II C29 C26 C 0 1 Y N N N N N -2.275 11.788 -8.841 4.314 -5.246 -0.304 C29 2II 29 2II N4 N3 N 0 1 Y N N N N N -1.592 11.061 -7.955 3.379 -5.962 0.292 N4 2II 30 2II C28 C27 C 0 1 Y N N N N N -0.861 11.732 -7.063 2.350 -5.402 0.900 C28 2II 31 2II N2 N4 N 0 1 Y N N N N N -0.559 17.451 -7.714 2.204 0.270 0.070 N2 2II 32 2II O1 O2 O 0 1 N N N N N N 3.629 16.598 -4.679 -2.955 -0.820 -0.247 O1 2II 33 2II C4 C28 C 0 1 Y N N N N N 3.542 17.666 -2.467 -5.342 -0.593 -0.248 C4 2II 34 2II C5 C29 C 0 1 Y N N N N N 3.256 16.972 -1.291 -5.943 -0.883 0.964 C5 2II 35 2II C6 C30 C 0 1 Y N N N N N 3.888 17.292 -0.092 -7.019 -0.140 1.404 C6 2II 36 2II O O3 O 0 1 N N N N N N 5.637 18.593 2.235 -9.346 1.889 1.783 O 2II 37 2II N N5 N 0 1 N N N N N N 6.298 19.969 0.526 -8.689 2.707 -0.230 N 2II 38 2II C C31 C 0 1 N N N N N N 7.188 20.819 1.304 -9.666 3.788 -0.384 C 2II 39 2II H1 H1 H 0 1 N N N N N N 7.021 19.965 -1.470 -6.960 3.211 -1.324 H1 2II 40 2II H2 H2 H 0 1 N N N N N N 5.689 21.125 -1.147 -8.076 2.085 -2.148 H2 2II 41 2II H3 H3 H 0 1 N N N N N N 4.622 19.324 -3.281 -5.345 0.671 -1.975 H3 2II 42 2II H4 H4 H 0 1 N N N N N N 2.569 18.330 -4.246 -4.157 -1.439 -1.808 H4 2II 43 2II H5 H5 H 0 1 N N N N N N 1.906 16.816 -3.541 -4.252 -2.426 -0.330 H5 2II 44 2II H6 H6 H 0 1 N N N N N N 4.847 15.084 -6.391 -2.767 -2.997 -1.686 H6 2II 45 2II H7 H7 H 0 1 N N N N N N 3.797 13.991 -8.340 -0.670 -4.122 -2.305 H7 2II 46 2II H8 H8 H 0 1 N N N N N N 1.491 14.552 -8.974 1.488 -3.211 -1.558 H8 2II 47 2II H9 H9 H 0 1 N N N N N N 1.155 17.072 -5.533 -0.558 -0.017 0.434 H9 2II 48 2II H10 H10 H 0 1 N N N N N N -2.462 19.402 -7.408 3.551 2.422 1.039 H10 2II 49 2II H11 H11 H 0 1 N N N N N N -1.023 19.346 -9.673 4.851 1.593 2.892 H11 2II 50 2II H12 H12 H 0 1 N N N N N N -2.405 20.489 -9.582 5.739 0.429 1.858 H12 2II 51 2II H13 H13 H 0 1 N N N N N N -2.322 17.689 -10.845 6.165 3.392 2.209 H13 2II 52 2II H14 H14 H 0 1 N N N N N N -2.939 19.217 -11.560 7.348 2.124 1.787 H14 2II 53 2II H15 H15 H 0 1 N N N N N N -4.669 19.396 -8.235 5.569 1.128 -0.876 H15 2II 54 2II H16 H16 H 0 1 N N N N N N -4.449 17.621 -8.074 4.567 2.587 -1.142 H16 2II 55 2II H17 H17 H 0 1 N N N N N N -6.446 18.714 -9.106 7.536 5.120 1.057 H17 2II 56 2II H18 H18 H 0 1 N N N N N N -7.089 19.183 -10.716 8.741 3.879 0.638 H18 2II 57 2II H19 H19 H 0 1 N N N N N N -0.061 13.589 -6.361 1.360 -3.579 1.425 H19 2II 58 2II H20 H20 H 0 1 N N N N N N -2.827 13.702 -9.623 5.013 -3.290 -0.816 H20 2II 59 2II H21 H21 H 0 1 N N N N N N -8.427 17.407 -9.698 9.427 6.106 -0.208 H21 2II 60 2II H22 H22 H 0 1 N N N N N N -7.609 16.837 -11.192 9.116 4.981 -1.551 H22 2II 61 2II H23 H23 H 0 1 N N N N N N -6.966 16.367 -9.582 7.911 6.222 -1.133 H23 2II 62 2II H24 H24 H 0 1 N N N N N N -3.345 15.930 -8.617 5.027 -1.121 0.981 H24 2II 63 2II H25 H25 H 0 1 N N N N N N -2.896 11.268 -9.555 5.141 -5.746 -0.786 H25 2II 64 2II H26 H26 H 0 1 N N N N N N -0.357 11.170 -6.291 1.613 -6.025 1.383 H26 2II 65 2II H27 H27 H 0 1 N N N N N N 2.531 16.172 -1.311 -5.569 -1.696 1.569 H27 2II 66 2II H28 H28 H 0 1 N N N N N N 3.671 16.729 0.804 -7.485 -0.369 2.350 H28 2II 67 2II H29 H29 H 0 1 N N N N N N 7.174 20.500 2.357 -10.551 3.408 -0.896 H29 2II 68 2II H30 H30 H 0 1 N N N N N N 8.212 20.736 0.910 -9.949 4.165 0.599 H30 2II 69 2II H31 H31 H 0 1 N N N N N N 6.851 21.864 1.233 -9.226 4.595 -0.970 H31 2II 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2II O2 C23 DOUB N N 1 2II C23 C24 SING N N 2 2II C23 N3 SING N N 3 2II C21 N3 SING N N 4 2II C21 C20 SING N N 5 2II C25 C24 SING N N 6 2II N3 C22 SING N N 7 2II C20 C19 SING N N 8 2II C30 C29 DOUB Y N 9 2II C30 C26 SING Y N 10 2II C29 N4 SING Y N 11 2II C22 C19 SING N N 12 2II C18 N1 SING Y N 13 2II C18 C17 DOUB Y N 14 2II C19 N1 SING N N 15 2II N1 N2 SING Y N 16 2II C13 C12 DOUB Y N 17 2II C13 C14 SING Y N 18 2II C17 C26 SING N N 19 2II C17 C16 SING Y N 20 2II C26 C27 DOUB Y N 21 2II N4 C28 DOUB Y N 22 2II C12 C11 SING Y N 23 2II N2 C16 DOUB Y N 24 2II C16 C14 SING N N 25 2II C14 C15 DOUB Y N 26 2II C27 C28 SING Y N 27 2II C11 C10 DOUB Y N 28 2II C15 C10 SING Y N 29 2II C10 O1 SING N N 30 2II O1 C9 SING N N 31 2II C9 C4 SING N N 32 2II C4 C3 DOUB Y N 33 2II C4 C5 SING Y N 34 2II C3 C2 SING Y N 35 2II C5 C6 DOUB Y N 36 2II C2 C1 SING N N 37 2II C2 C7 DOUB Y N 38 2II C1 N SING N N 39 2II C6 C7 SING Y N 40 2II C7 C8 SING N N 41 2II N C8 SING N N 42 2II N C SING N N 43 2II C8 O DOUB N N 44 2II C1 H1 SING N N 45 2II C1 H2 SING N N 46 2II C3 H3 SING N N 47 2II C9 H4 SING N N 48 2II C9 H5 SING N N 49 2II C11 H6 SING N N 50 2II C12 H7 SING N N 51 2II C13 H8 SING N N 52 2II C15 H9 SING N N 53 2II C19 H10 SING N N 54 2II C20 H11 SING N N 55 2II C20 H12 SING N N 56 2II C21 H13 SING N N 57 2II C21 H14 SING N N 58 2II C22 H15 SING N N 59 2II C22 H16 SING N N 60 2II C24 H17 SING N N 61 2II C24 H18 SING N N 62 2II C27 H19 SING N N 63 2II C30 H20 SING N N 64 2II C25 H21 SING N N 65 2II C25 H22 SING N N 66 2II C25 H23 SING N N 67 2II C18 H24 SING N N 68 2II C29 H25 SING N N 69 2II C28 H26 SING N N 70 2II C5 H27 SING N N 71 2II C6 H28 SING N N 72 2II C H29 SING N N 73 2II C H30 SING N N 74 2II C H31 SING N N 75 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2II InChI InChI 1.06 "InChI=1S/C31H31N5O3/c1-3-29(37)35-14-11-25(18-35)36-19-28(22-9-12-32-13-10-22)30(33-36)23-5-4-6-26(16-23)39-20-21-7-8-27-24(15-21)17-34(2)31(27)38/h4-10,12-13,15-16,19,25H,3,11,14,17-18,20H2,1-2H3/t25-/m0/s1" 2II InChIKey InChI 1.06 HBXVRUOUGUETDX-VWLOTQADSA-N 2II SMILES_CANONICAL CACTVS 3.385 "CCC(=O)N1CC[C@@H](C1)n2cc(c3ccncc3)c(n2)c4cccc(OCc5ccc6c(CN(C)C6=O)c5)c4" 2II SMILES CACTVS 3.385 "CCC(=O)N1CC[CH](C1)n2cc(c3ccncc3)c(n2)c4cccc(OCc5ccc6c(CN(C)C6=O)c5)c4" 2II SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CC[C@@H](C1)n2cc(c(n2)c3cccc(c3)OCc4ccc5c(c4)CN(C5=O)C)c6ccncc6" 2II SMILES "OpenEye OEToolkits" 2.0.7 "CCC(=O)N1CCC(C1)n2cc(c(n2)c3cccc(c3)OCc4ccc5c(c4)CN(C5=O)C)c6ccncc6" # _pdbx_chem_comp_identifier.comp_id 2II _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-methyl-5-[[3-[1-[(3~{S})-1-propanoylpyrrolidin-3-yl]-4-pyridin-4-yl-pyrazol-3-yl]phenoxy]methyl]-3~{H}-isoindol-1-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2II "Create component" 2023-07-11 PDBE 2II "Initial release" 2024-06-05 RCSB 2II "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 2II _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C25 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #