data_2IJ # _chem_comp.id 2IJ _chem_comp.name "5-{(3S)-1-[(Z)-iminomethyl]piperidin-3-yl}-2-(4-phenoxyphenoxy)pyridine-3-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H24 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-29 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 416.472 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2IJ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7R61 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2IJ C2 C1 C 0 1 Y N N N N N 19.163 5.794 3.414 -0.528 1.584 -0.073 C2 2IJ 1 2IJ C3 C2 C 0 1 Y N N N N N 19.004 5.726 1.942 -1.638 2.342 0.328 C3 2IJ 2 2IJ C8 C3 C 0 1 N N N N N N 17.834 5.039 1.319 -1.519 3.798 0.535 C8 2IJ 3 2IJ C11 C4 C 0 1 Y N N N N N 18.057 5.446 5.483 1.738 1.413 -0.570 C11 2IJ 4 2IJ C12 C5 C 0 1 Y N N N N N 18.131 4.418 6.430 2.700 1.164 0.399 C12 2IJ 5 2IJ C13 C6 C 0 1 Y N N N N N 17.947 4.679 7.779 3.788 0.367 0.103 C13 2IJ 6 2IJ C14 C7 C 0 1 Y N N N N N 17.697 5.989 8.203 3.919 -0.186 -1.162 C14 2IJ 7 2IJ C15 C8 C 0 1 Y N N N N N 17.644 7.014 7.254 2.958 0.063 -2.131 C15 2IJ 8 2IJ C16 C9 C 0 1 Y N N N N N 17.832 6.763 5.908 1.870 0.860 -1.836 C16 2IJ 9 2IJ O17 O1 O 0 1 N N N N N N 17.521 6.269 9.521 4.991 -0.971 -1.453 O17 2IJ 10 2IJ C19 C10 C 0 1 Y N N N N N 16.604 7.747 11.162 7.136 -0.793 -0.439 C19 2IJ 11 2IJ C20 C11 C 0 1 Y N N N N N 15.506 8.501 11.616 7.997 -1.120 0.590 C20 2IJ 12 2IJ C21 C12 C 0 1 Y N N N N N 14.294 8.569 10.876 7.572 -1.947 1.613 C21 2IJ 13 2IJ C22 C13 C 0 1 Y N N N N N 14.177 7.901 9.668 6.283 -2.448 1.610 C22 2IJ 14 2IJ C24 C14 C 0 1 N N S N N N 21.965 7.692 0.831 -4.216 -0.419 0.522 C24 2IJ 15 2IJ C27 C15 C 0 1 N N N N N N 24.594 8.607 0.096 -5.778 -2.915 0.535 C27 2IJ 16 2IJ C30 C16 C 0 1 N N N N N N 23.325 10.738 0.126 -6.947 -1.761 -1.305 C30 2IJ 17 2IJ N1 N1 N 0 1 Y N N N N N 20.214 6.459 3.967 -0.639 0.279 -0.258 N1 2IJ 18 2IJ C4 C17 C 0 1 Y N N N N N 19.960 6.324 1.153 -2.862 1.692 0.527 C4 2IJ 19 2IJ C5 C18 C 0 1 Y N N N N N 21.021 7.011 1.754 -2.921 0.325 0.320 C5 2IJ 20 2IJ C6 C19 C 0 1 Y N N N N N 21.122 7.053 3.164 -1.780 -0.354 -0.070 C6 2IJ 21 2IJ O7 O2 O 0 1 N N N N N N 18.226 5.192 4.160 0.664 2.194 -0.277 O7 2IJ 22 2IJ O9 O3 O 0 1 N N N N N N 17.898 4.660 0.163 -0.451 4.352 0.358 O9 2IJ 23 2IJ N10 N2 N 0 1 N N N N N N 16.654 4.929 2.045 -2.594 4.514 0.920 N10 2IJ 24 2IJ C18 C20 C 0 1 Y N N N N N 16.462 7.040 9.963 5.840 -1.291 -0.442 C18 2IJ 25 2IJ C23 C21 C 0 1 Y N N N N N 15.270 7.150 9.223 5.418 -2.125 0.583 C23 2IJ 26 2IJ C25 C22 C 0 1 N N N N N N 22.981 6.754 0.161 -4.029 -1.485 1.603 C25 2IJ 27 2IJ C26 C23 C 0 1 N N N N N N 23.882 7.576 -0.773 -5.352 -2.219 1.832 C26 2IJ 28 2IJ N28 N3 N 0 1 N N N N N N 23.503 9.479 0.573 -5.819 -1.918 -0.544 N28 2IJ 29 2IJ C29 C24 C 0 1 N N N N N N 22.651 8.837 1.566 -4.629 -1.093 -0.790 C29 2IJ 30 2IJ N31 N4 N 0 1 N N N N N N 24.185 11.187 -0.696 -7.989 -2.493 -1.078 N31 2IJ 31 2IJ H1 H1 H 0 1 N N N N N N 18.334 3.408 6.105 2.598 1.595 1.384 H1 2IJ 32 2IJ H2 H2 H 0 1 N N N N N N 17.996 3.876 8.499 4.536 0.174 0.857 H2 2IJ 33 2IJ H3 H3 H 0 1 N N N N N N 17.452 8.025 7.580 3.060 -0.368 -3.116 H3 2IJ 34 2IJ H4 H4 H 0 1 N N N N N N 17.806 7.571 5.192 1.121 1.054 -2.590 H4 2IJ 35 2IJ H5 H5 H 0 1 N N N N N N 17.527 7.715 11.721 7.469 -0.148 -1.239 H5 2IJ 36 2IJ H6 H6 H 0 1 N N N N N N 15.586 9.041 12.548 9.004 -0.730 0.595 H6 2IJ 37 2IJ H7 H7 H 0 1 N N N N N N 13.462 9.143 11.257 8.247 -2.201 2.417 H7 2IJ 38 2IJ H8 H8 H 0 1 N N N N N N 13.269 7.958 9.087 5.953 -3.094 2.410 H8 2IJ 39 2IJ H9 H9 H 0 1 N N N N N N 21.368 8.142 0.024 -4.993 0.281 0.831 H9 2IJ 40 2IJ H10 H10 H 0 1 N N N N N N 25.105 8.122 0.940 -5.057 -3.694 0.285 H10 2IJ 41 2IJ H11 H11 H 0 1 N N N N N N 25.324 9.180 -0.494 -6.766 -3.357 0.662 H11 2IJ 42 2IJ H12 H12 H 0 1 N Y N N N N 22.489 11.339 0.452 -6.967 -1.025 -2.096 H12 2IJ 43 2IJ H13 H13 H 0 1 N N N N N N 19.892 6.264 0.077 -3.739 2.243 0.832 H13 2IJ 44 2IJ H14 H14 H 0 1 N N N N N N 21.953 7.577 3.613 -1.827 -1.421 -0.228 H14 2IJ 45 2IJ H15 H15 H 0 1 N N N N N N 15.840 4.534 1.619 -3.446 4.072 1.061 H15 2IJ 46 2IJ H16 H16 H 0 1 N N N N N N 16.619 5.245 2.993 -2.516 5.471 1.056 H16 2IJ 47 2IJ H17 H17 H 0 1 N N N N N N 15.196 6.635 8.276 4.411 -2.517 0.581 H17 2IJ 48 2IJ H18 H18 H 0 1 N N N N N N 22.448 5.988 -0.421 -3.269 -2.198 1.282 H18 2IJ 49 2IJ H19 H19 H 0 1 N N N N N N 23.596 6.266 0.931 -3.712 -1.010 2.531 H19 2IJ 50 2IJ H20 H20 H 0 1 N N N N N N 23.274 8.081 -1.538 -6.119 -1.503 2.129 H20 2IJ 51 2IJ H21 H21 H 0 1 N N N N N N 24.618 6.921 -1.263 -5.224 -2.963 2.619 H21 2IJ 52 2IJ H22 H22 H 0 1 N N N N N N 23.255 8.451 2.400 -4.859 -0.333 -1.536 H22 2IJ 53 2IJ H23 H23 H 0 1 N N N N N N 21.906 9.548 1.951 -3.815 -1.724 -1.148 H23 2IJ 54 2IJ H24 H24 H 0 1 N N N N N N 23.981 12.125 -0.977 -8.787 -2.382 -1.617 H24 2IJ 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2IJ C26 C27 SING N N 1 2IJ C26 C25 SING N N 2 2IJ N31 C30 DOUB N N 3 2IJ C27 N28 SING N N 4 2IJ C30 N28 SING N N 5 2IJ C25 C24 SING N N 6 2IJ O9 C8 DOUB N N 7 2IJ N28 C29 SING N N 8 2IJ C24 C29 SING N N 9 2IJ C24 C5 SING N N 10 2IJ C4 C5 DOUB Y N 11 2IJ C4 C3 SING Y N 12 2IJ C8 C3 SING N N 13 2IJ C8 N10 SING N N 14 2IJ C5 C6 SING Y N 15 2IJ C3 C2 DOUB Y N 16 2IJ C6 N1 DOUB Y N 17 2IJ C2 N1 SING Y N 18 2IJ C2 O7 SING N N 19 2IJ O7 C11 SING N N 20 2IJ C11 C16 DOUB Y N 21 2IJ C11 C12 SING Y N 22 2IJ C16 C15 SING Y N 23 2IJ C12 C13 DOUB Y N 24 2IJ C15 C14 DOUB Y N 25 2IJ C13 C14 SING Y N 26 2IJ C14 O17 SING N N 27 2IJ C23 C22 DOUB Y N 28 2IJ C23 C18 SING Y N 29 2IJ O17 C18 SING N N 30 2IJ C22 C21 SING Y N 31 2IJ C18 C19 DOUB Y N 32 2IJ C21 C20 DOUB Y N 33 2IJ C19 C20 SING Y N 34 2IJ C12 H1 SING N N 35 2IJ C13 H2 SING N N 36 2IJ C15 H3 SING N N 37 2IJ C16 H4 SING N N 38 2IJ C19 H5 SING N N 39 2IJ C20 H6 SING N N 40 2IJ C21 H7 SING N N 41 2IJ C22 H8 SING N N 42 2IJ C24 H9 SING N N 43 2IJ C27 H10 SING N N 44 2IJ C27 H11 SING N N 45 2IJ C30 H12 SING N N 46 2IJ C4 H13 SING N N 47 2IJ C6 H14 SING N N 48 2IJ N10 H15 SING N N 49 2IJ N10 H16 SING N N 50 2IJ C23 H17 SING N N 51 2IJ C25 H18 SING N N 52 2IJ C25 H19 SING N N 53 2IJ C26 H20 SING N N 54 2IJ C26 H21 SING N N 55 2IJ C29 H22 SING N N 56 2IJ C29 H23 SING N N 57 2IJ N31 H24 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2IJ SMILES ACDLabs 12.01 "N=CN1CCCC(C1)c1cc(C(N)=O)c(Oc2ccc(Oc3ccccc3)cc2)nc1" 2IJ InChI InChI 1.03 "InChI=1S/C24H24N4O3/c25-16-28-12-4-5-17(15-28)18-13-22(23(26)29)24(27-14-18)31-21-10-8-20(9-11-21)30-19-6-2-1-3-7-19/h1-3,6-11,13-14,16-17,25H,4-5,12,15H2,(H2,26,29)/b25-16-/t17-/m1/s1" 2IJ InChIKey InChI 1.03 CLMOAHOTUBCRAU-GGMUZDTOSA-N 2IJ SMILES_CANONICAL CACTVS 3.385 "NC(=O)c1cc(cnc1Oc2ccc(Oc3ccccc3)cc2)[C@@H]4CCCN(C4)C=N" 2IJ SMILES CACTVS 3.385 "NC(=O)c1cc(cnc1Oc2ccc(Oc3ccccc3)cc2)[CH]4CCCN(C4)C=N" 2IJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\N1CCC[C@H](C1)c2cc(c(nc2)Oc3ccc(cc3)Oc4ccccc4)C(=O)N" 2IJ SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)Oc2ccc(cc2)Oc3c(cc(cn3)C4CCCN(C4)C=N)C(=O)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2IJ "SYSTEMATIC NAME" ACDLabs 12.01 "5-{(3S)-1-[(Z)-iminomethyl]piperidin-3-yl}-2-(4-phenoxyphenoxy)pyridine-3-carboxamide" 2IJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "5-[(3~{S})-1-(iminomethyl)piperidin-3-yl]-2-(4-phenoxyphenoxy)pyridine-3-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2IJ "Create component" 2021-06-29 RCSB 2IJ "Modify leaving atom flag" 2021-06-29 RCSB 2IJ "Initial release" 2021-10-06 RCSB 2IJ "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 2IJ _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C30 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #