data_2IU # _chem_comp.id 2IU _chem_comp.name "[[(2R,3S,5R)-5-[5-(1-benzofuran-2-yl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H19 N2 O15 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms BFdUTP _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-06-21 _chem_comp.pdbx_modified_date 2022-06-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 584.258 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2IU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7OWF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2IU C10 C1 C 0 1 Y N N 19.830 -14.857 -5.747 6.094 2.165 0.562 C10 2IU 1 2IU C13 C2 C 0 1 Y N N 21.961 -13.689 -8.392 9.022 1.727 -1.502 C13 2IU 2 2IU C15 C3 C 0 1 Y N N 21.737 -11.775 -6.954 9.135 4.026 -0.806 C15 2IU 3 2IU C12 C4 C 0 1 Y N N 21.092 -14.366 -7.549 7.844 1.565 -0.785 C12 2IU 4 2IU C14 C5 C 0 1 Y N N 22.283 -12.380 -8.074 9.659 2.950 -1.509 C14 2IU 5 2IU C16 C6 C 0 1 Y N N 20.841 -12.463 -6.140 7.977 3.889 -0.093 C16 2IU 6 2IU N N1 N 0 1 N N N 19.172 -19.573 -7.070 3.027 -1.395 0.126 N 2IU 7 2IU C C7 C 0 1 N N S 17.588 -19.499 -10.062 0.793 -3.983 -1.149 C 2IU 8 2IU O O1 O 0 1 N N N 16.598 -19.784 -11.054 0.673 -4.673 -2.395 O 2IU 9 2IU C1 C8 C 0 1 N N N 17.446 -20.347 -8.793 2.238 -3.477 -0.948 C1 2IU 10 2IU C11 C9 C 0 1 Y N N 20.504 -13.781 -6.441 7.318 2.659 -0.073 C11 2IU 11 2IU C2 C10 C 0 1 N N R 18.890 -20.442 -8.262 2.089 -1.942 -0.858 C2 2IU 12 2IU C3 C11 C 0 1 N N R 18.956 -19.947 -10.552 -0.059 -2.695 -1.157 C3 2IU 13 2IU C4 C12 C 0 1 N N N 19.601 -19.044 -11.575 -1.396 -2.935 -0.453 C4 2IU 14 2IU C5 C13 C 0 1 N N N 19.623 -18.275 -7.231 4.022 -0.560 -0.292 C5 2IU 15 2IU C6 C14 C 0 1 N N N 19.686 -17.370 -6.204 4.895 -0.044 0.623 C6 2IU 16 2IU C7 C15 C 0 1 N N N 19.330 -17.820 -4.875 4.723 -0.414 2.036 C7 2IU 17 2IU C8 C16 C 0 1 N N N 18.820 -20.058 -5.820 2.886 -1.722 1.421 C8 2IU 18 2IU C9 C17 C 0 1 Y N N 20.055 -15.976 -6.458 5.984 0.862 0.205 C9 2IU 19 2IU N1 N2 N 0 1 N N N 18.924 -19.147 -4.791 3.713 -1.246 2.368 N1 2IU 20 2IU O1 O2 O 0 1 N N N 19.739 -20.022 -9.332 0.727 -1.728 -0.426 O1 2IU 21 2IU O10 O3 O 0 1 N N N 17.572 -12.582 -12.944 -8.421 2.093 -1.028 O10 2IU 22 2IU O11 O4 O 0 1 N N N 15.984 -13.508 -14.653 -7.410 3.392 0.885 O11 2IU 23 2IU O12 O5 O 0 1 N N N 19.390 -17.106 -3.885 5.476 0.020 2.888 O12 2IU 24 2IU O13 O6 O 0 1 N N N 18.431 -21.214 -5.645 1.981 -2.465 1.747 O13 2IU 25 2IU O14 O7 O 0 1 Y N N 20.813 -15.716 -7.592 7.016 0.518 -0.589 O14 2IU 26 2IU O2 O8 O 0 1 N N N 19.772 -17.765 -10.943 -2.214 -1.770 -0.572 O2 2IU 27 2IU O3 O9 O 0 1 N N N 20.061 -16.447 -13.050 -3.639 -1.977 1.501 O3 2IU 28 2IU O4 O10 O 0 1 N N N 20.477 -15.296 -10.778 -4.661 -2.725 -0.683 O4 2IU 29 2IU O5 O11 O 0 1 N N N 18.133 -16.050 -11.408 -4.266 -0.180 -0.157 O5 2IU 30 2IU O6 O12 O 0 1 N N N 17.223 -17.258 -13.525 -6.601 -0.192 0.802 O6 2IU 31 2IU O7 O13 O 0 1 N N N 15.792 -17.102 -11.541 -4.894 1.282 1.936 O7 2IU 32 2IU O8 O14 O 0 1 N N N 16.429 -14.918 -12.735 -5.870 1.886 -0.430 O8 2IU 33 2IU O9 O15 O 0 1 N N N 18.263 -14.554 -14.428 -6.802 4.120 -1.454 O9 2IU 34 2IU P P1 P 0 1 N N N 19.696 -16.320 -11.524 -3.694 -1.670 0.054 P 2IU 35 2IU P1 P2 P 0 1 N N N 16.839 -16.386 -12.276 -5.433 0.680 0.543 P1 2IU 36 2IU P2 P3 P 0 1 N N N 17.065 -13.843 -13.731 -7.132 2.884 -0.477 P2 2IU 37 2IU H1 H1 H 0 1 N N N 19.257 -14.777 -4.835 5.419 2.725 1.193 H1 2IU 38 2IU H2 H2 H 0 1 N N N 22.373 -14.167 -9.268 9.438 0.897 -2.053 H2 2IU 39 2IU H3 H3 H 0 1 N N N 22.009 -10.759 -6.709 9.646 4.977 -0.822 H3 2IU 40 2IU H4 H4 H 0 1 N N N 22.964 -11.827 -8.704 10.575 3.072 -2.068 H4 2IU 41 2IU H5 H5 H 0 1 N N N 20.409 -11.977 -5.278 7.573 4.729 0.453 H5 2IU 42 2IU H6 H6 H 0 1 N N N 17.607 -18.430 -9.803 0.497 -4.632 -0.325 H6 2IU 43 2IU H7 H7 H 0 1 N N N 15.746 -19.502 -10.742 1.233 -5.458 -2.465 H7 2IU 44 2IU H8 H8 H 0 1 N N N 16.789 -19.853 -8.061 2.657 -3.875 -0.024 H8 2IU 45 2IU H9 H9 H 0 1 N N N 17.047 -21.345 -9.029 2.861 -3.750 -1.799 H9 2IU 46 2IU H10 H10 H 0 1 N N N 19.100 -21.490 -8.001 2.256 -1.486 -1.834 H10 2IU 47 2IU H11 H11 H 0 1 N N N 18.858 -20.954 -10.985 -0.224 -2.355 -2.180 H11 2IU 48 2IU H12 H12 H 0 1 N N N 18.953 -18.947 -12.458 -1.902 -3.783 -0.914 H12 2IU 49 2IU H13 H13 H 0 1 N N N 20.577 -19.451 -11.879 -1.218 -3.148 0.601 H13 2IU 50 2IU H14 H14 H 0 1 N N N 19.941 -17.960 -8.214 4.119 -0.310 -1.339 H14 2IU 51 2IU H15 H15 H 0 1 N N N 18.679 -19.478 -3.880 3.584 -1.501 3.295 H15 2IU 52 2IU H16 H16 H 0 1 N N N 17.076 -11.819 -13.215 -8.310 1.731 -1.918 H16 2IU 53 2IU H17 H17 H 0 1 N N N 21.089 -14.872 -11.368 -4.744 -2.584 -1.636 H17 2IU 54 2IU H18 H18 H 0 1 N N N 15.592 -17.917 -11.987 -4.128 1.865 1.842 H18 2IU 55 2IU H19 H19 H 0 1 N N N 18.079 -14.649 -15.355 -7.520 4.763 -1.531 H19 2IU 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2IU O11 P2 DOUB N N 1 2IU O9 P2 SING N N 2 2IU P2 O10 SING N N 3 2IU P2 O8 SING N N 4 2IU O6 P1 DOUB N N 5 2IU O3 P DOUB N N 6 2IU O8 P1 SING N N 7 2IU P1 O7 SING N N 8 2IU P1 O5 SING N N 9 2IU C4 O2 SING N N 10 2IU C4 C3 SING N N 11 2IU P O5 SING N N 12 2IU P O2 SING N N 13 2IU P O4 SING N N 14 2IU O C SING N N 15 2IU C3 C SING N N 16 2IU C3 O1 SING N N 17 2IU C C1 SING N N 18 2IU O1 C2 SING N N 19 2IU C1 C2 SING N N 20 2IU C13 C14 DOUB Y N 21 2IU C13 C12 SING Y N 22 2IU C2 N SING N N 23 2IU C14 C15 SING Y N 24 2IU O14 C12 SING Y N 25 2IU O14 C9 SING Y N 26 2IU C12 C11 DOUB Y N 27 2IU C5 N SING N N 28 2IU C5 C6 DOUB N N 29 2IU N C8 SING N N 30 2IU C15 C16 DOUB Y N 31 2IU C9 C6 SING N N 32 2IU C9 C10 DOUB Y N 33 2IU C11 C16 SING Y N 34 2IU C11 C10 SING Y N 35 2IU C6 C7 SING N N 36 2IU C8 O13 DOUB N N 37 2IU C8 N1 SING N N 38 2IU C7 N1 SING N N 39 2IU C7 O12 DOUB N N 40 2IU C10 H1 SING N N 41 2IU C13 H2 SING N N 42 2IU C15 H3 SING N N 43 2IU C14 H4 SING N N 44 2IU C16 H5 SING N N 45 2IU C H6 SING N N 46 2IU O H7 SING N N 47 2IU C1 H8 SING N N 48 2IU C1 H9 SING N N 49 2IU C2 H10 SING N N 50 2IU C3 H11 SING N N 51 2IU C4 H12 SING N N 52 2IU C4 H13 SING N N 53 2IU C5 H14 SING N N 54 2IU N1 H15 SING N N 55 2IU O10 H16 SING N N 56 2IU O4 H17 SING N N 57 2IU O7 H18 SING N N 58 2IU O9 H19 SING N N 59 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2IU InChI InChI 1.03 "InChI=1S/C17H19N2O15P3/c20-11-6-15(32-14(11)8-30-36(26,27)34-37(28,29)33-35(23,24)25)19-7-10(16(21)18-17(19)22)13-5-9-3-1-2-4-12(9)31-13/h1-5,7,11,14-15,20H,6,8H2,(H,26,27)(H,28,29)(H,18,21,22)(H2,23,24,25)/t11-,14+,15+/m0/s1" 2IU InChIKey InChI 1.03 VGLLIBLXYZHTBF-NILFDRSVSA-N 2IU SMILES_CANONICAL CACTVS 3.385 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3oc4ccccc4c3" 2IU SMILES CACTVS 3.385 "O[CH]1C[CH](O[CH]1CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)N2C=C(C(=O)NC2=O)c3oc4ccccc4c3" 2IU SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C3=CN(C(=O)NC3=O)[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" 2IU SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)cc(o2)C3=CN(C(=O)NC3=O)C4CC(C(O4)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" # _pdbx_chem_comp_identifier.comp_id 2IU _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[[(2~{R},3~{S},5~{R})-5-[5-(1-benzofuran-2-yl)-2,4-bis(oxidanylidene)pyrimidin-1-yl]-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2IU "Create component" 2021-06-21 PDBE 2IU "Modify synonyms" 2022-06-22 PDBE 2IU "Initial release" 2022-06-29 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2IU _pdbx_chem_comp_synonyms.name BFdUTP _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #