data_2JD # _chem_comp.id 2JD _chem_comp.name "(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H13 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-03 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 228.137 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2JD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4PWV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2JD C16 C16 C 0 1 N N N 1.460 39.095 190.264 3.509 0.088 0.145 C16 2JD 1 2JD O3 O3 O 0 1 N N N 0.504 38.447 189.837 4.282 -0.646 -0.424 O3 2JD 2 2JD C17 C17 C 0 1 N N R 1.444 39.683 191.644 2.196 -0.451 0.654 C17 2JD 3 2JD O4 O4 O 0 1 N N N 2.362 40.777 191.528 2.147 -1.863 0.443 O4 2JD 4 2JD C18 C18 C 0 1 N N N 1.506 38.828 192.879 1.045 0.218 -0.099 C18 2JD 5 2JD C19 C19 C 0 1 N N N 0.331 37.903 192.959 -0.288 -0.328 0.417 C19 2JD 6 2JD C20 C20 C 0 1 N N N 2.746 37.991 192.858 1.098 1.731 0.127 C20 2JD 7 2JD C21 C21 C 0 1 N N N 1.511 39.703 194.096 1.172 -0.079 -1.594 C21 2JD 8 2JD P P P 0 1 N N N -2.394 38.040 193.026 -2.912 -0.040 0.001 P 2JD 9 2JD O1P O1P O 0 1 N N N -3.333 39.331 193.227 -3.133 -1.497 -0.136 O1P 2JD 10 2JD O2P O2P O 0 1 N N N -0.909 38.529 192.652 -1.364 0.297 -0.286 O2P 2JD 11 2JD O3P O3P O 0 1 N N N -2.991 37.135 191.832 -3.837 0.746 -1.057 O3P 2JD 12 2JD H15 H15 H 0 1 N N N 0.456 40.163 191.710 2.105 -0.239 1.719 H15 2JD 13 2JD H16 H16 H 0 1 N N N 2.427 41.226 192.363 2.222 -2.125 -0.485 H16 2JD 14 2JD H17 H17 H 0 1 N N N 0.274 37.501 193.981 -0.326 -1.405 0.256 H17 2JD 15 2JD H18 H18 H 0 1 N N N 0.489 37.078 192.249 -0.379 -0.116 1.483 H18 2JD 16 2JD H19 H19 H 0 1 N N N 2.784 37.369 193.764 2.047 2.120 -0.241 H19 2JD 17 2JD H20 H20 H 0 1 N N N 2.736 37.344 191.969 0.277 2.207 -0.410 H20 2JD 18 2JD H21 H21 H 0 1 N N N 3.629 38.645 192.825 1.007 1.942 1.192 H21 2JD 19 2JD H22 H22 H 0 1 N N N 1.556 39.076 194.999 1.135 -1.156 -1.755 H22 2JD 20 2JD H23 H23 H 0 1 N N N 2.387 40.367 194.066 0.352 0.398 -2.131 H23 2JD 21 2JD H24 H24 H 0 1 N N N 0.593 40.308 194.116 2.122 0.311 -1.962 H24 2JD 22 2JD OXT OXT O 0 1 N Y N ? ? ? -3.293 0.423 1.495 OXT 2JD 23 2JD H27 H27 H 0 1 N Y N ? ? ? -3.172 1.368 1.657 H27 2JD 24 2JD H4 H4 H 0 1 N N N -3.776 37.544 191.486 -4.784 0.590 -0.943 H4 2JD 25 2JD O1 O1 O 0 1 N Y N 2.643 39.311 189.456 3.821 1.380 0.329 O1 2JD 26 2JD HXT HXT H 0 1 N Y N 2.533 38.888 188.613 4.674 1.679 -0.014 HXT 2JD 27 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2JD O3 C16 DOUB N N 1 2JD C16 C17 SING N N 2 2JD O4 C17 SING N N 3 2JD C17 C18 SING N N 4 2JD O3P P SING N N 5 2JD O2P C19 SING N N 6 2JD O2P P SING N N 7 2JD C20 C18 SING N N 8 2JD C18 C19 SING N N 9 2JD C18 C21 SING N N 10 2JD P O1P DOUB N N 11 2JD C17 H15 SING N N 12 2JD O4 H16 SING N N 13 2JD C19 H17 SING N N 14 2JD C19 H18 SING N N 15 2JD C20 H19 SING N N 16 2JD C20 H20 SING N N 17 2JD C20 H21 SING N N 18 2JD C21 H22 SING N N 19 2JD C21 H23 SING N N 20 2JD C21 H24 SING N N 21 2JD P OXT SING N N 22 2JD OXT H27 SING N N 23 2JD O3P H4 SING N N 24 2JD C16 O1 SING N N 25 2JD O1 HXT SING N N 26 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2JD SMILES ACDLabs 12.01 "O=P(OCC(C(O)C(=O)O)(C)C)(O)O" 2JD InChI InChI 1.03 "InChI=1S/C6H13O7P/c1-6(2,4(7)5(8)9)3-13-14(10,11)12/h4,7H,3H2,1-2H3,(H,8,9)(H2,10,11,12)/t4-/m0/s1" 2JD InChIKey InChI 1.03 SVZWVVFMSSSVKX-BYPYZUCNSA-N 2JD SMILES_CANONICAL CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[C@@H](O)C(O)=O" 2JD SMILES CACTVS 3.385 "CC(C)(CO[P](O)(O)=O)[CH](O)C(O)=O" 2JD SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CC(C)(COP(=O)(O)O)[C@H](C(=O)O)O" 2JD SMILES "OpenEye OEToolkits" 1.9.2 "CC(C)(COP(=O)(O)O)C(C(=O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2JD "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoic acid" 2JD "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(2R)-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2JD "Create component" 2014-04-03 RCSB 2JD "Initial release" 2014-07-23 RCSB 2JD "Modify descriptor" 2014-09-05 RCSB #