data_2JX # _chem_comp.id 2JX _chem_comp.name "5-[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]-2,4-dihydro-3H-1,2,4-triazole-3-thione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H9 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-13 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 235.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2JX _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4NI1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2JX C2 C2 C 0 1 N N N N N N 34.471 26.633 48.824 -3.490 0.154 0.026 C2 2JX 1 2JX N3 N3 N 0 1 N N N N N N 33.776 26.329 49.970 -2.318 0.439 -0.575 N3 2JX 2 2JX S1 S1 S 0 1 N N N N N N 33.379 27.248 47.569 -4.986 0.943 -0.243 S1 2JX 3 2JX C4 C4 C 0 1 N N N N N N 34.806 25.888 50.759 -1.364 -0.422 -0.091 C4 2JX 4 2JX N5 N5 N 0 1 N N N N N N 35.970 25.883 50.273 -1.914 -1.210 0.776 N5 2JX 5 2JX N6 N6 N 0 1 N N N N N N 35.724 26.407 48.920 -3.270 -0.871 0.875 N6 2JX 6 2JX C7 C7 C 0 1 N N R N N N 34.439 25.426 52.181 0.086 -0.444 -0.501 C7 2JX 7 2JX C8 C8 C 0 1 N N N N N N 33.099 25.457 52.632 0.735 -1.755 -0.037 C8 2JX 8 2JX O9 O9 O 0 1 N N N N N N 32.741 26.221 53.838 2.112 -1.738 -0.430 O9 2JX 9 2JX C10 C10 C 0 1 Y N N N N N 33.739 26.071 54.900 2.805 -0.594 -0.180 C10 2JX 10 2JX C11 C11 C 0 1 Y N N N N N 35.108 26.151 54.529 2.141 0.596 0.091 C11 2JX 11 2JX O12 O12 O 0 1 N N N N N N 35.374 26.375 53.146 0.781 0.643 0.119 O12 2JX 12 2JX C13 C13 C 0 1 Y N N N N N 36.080 26.019 55.454 2.867 1.751 0.339 C13 2JX 13 2JX C14 C14 C 0 1 Y N N N N N 35.769 25.799 56.865 4.249 1.717 0.319 C14 2JX 14 2JX C15 C15 C 0 1 Y N N N N N 34.379 25.705 57.278 4.910 0.533 0.052 C15 2JX 15 2JX C16 C16 C 0 1 Y N N N N N 33.347 25.842 56.281 4.192 -0.621 -0.197 C16 2JX 16 2JX H1 H1 H 0 1 N N N N N N 32.799 26.407 50.170 -2.173 1.133 -1.238 H1 2JX 17 2JX H2 H2 H 0 1 N N N N N N 36.410 26.558 48.208 -3.928 -1.295 1.448 H2 2JX 18 2JX H3 H3 H 0 1 N N N N N N 34.825 24.403 52.298 0.163 -0.360 -1.585 H3 2JX 19 2JX H4 H4 H 0 1 N N N N N N 32.497 25.867 51.808 0.664 -1.837 1.048 H4 2JX 20 2JX H5 H5 H 0 1 N N N N N N 32.804 24.414 52.819 0.230 -2.601 -0.504 H5 2JX 21 2JX H6 H6 H 0 1 N N N N N N 37.113 26.077 55.145 2.353 2.677 0.548 H6 2JX 22 2JX H7 H7 H 0 1 N N N N N N 36.563 25.707 57.592 4.813 2.618 0.513 H7 2JX 23 2JX H8 H8 H 0 1 N N N N N N 34.124 25.535 58.314 5.990 0.510 0.037 H8 2JX 24 2JX H9 H9 H 0 1 N N N N N N 32.304 25.776 56.554 4.711 -1.545 -0.405 H9 2JX 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2JX S1 C2 DOUB N N 1 2JX C2 N6 SING N N 2 2JX C2 N3 SING N N 3 2JX N6 N5 SING N N 4 2JX N3 C4 SING N N 5 2JX N5 C4 DOUB N N 6 2JX C4 C7 SING N N 7 2JX C7 C8 SING N N 8 2JX C7 O12 SING N N 9 2JX C8 O9 SING N N 10 2JX O12 C11 SING N N 11 2JX O9 C10 SING N N 12 2JX C11 C10 SING Y N 13 2JX C11 C13 DOUB Y N 14 2JX C10 C16 DOUB Y N 15 2JX C13 C14 SING Y N 16 2JX C16 C15 SING Y N 17 2JX C14 C15 DOUB Y N 18 2JX N3 H1 SING N N 19 2JX N6 H2 SING N N 20 2JX C7 H3 SING N N 21 2JX C8 H4 SING N N 22 2JX C8 H5 SING N N 23 2JX C13 H6 SING N N 24 2JX C14 H7 SING N N 25 2JX C15 H8 SING N N 26 2JX C16 H9 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2JX SMILES ACDLabs 12.01 "S=C1NN=C(N1)C2Oc3ccccc3OC2" 2JX InChI InChI 1.03 "InChI=1S/C10H9N3O2S/c16-10-11-9(12-13-10)8-5-14-6-3-1-2-4-7(6)15-8/h1-4,8H,5H2,(H2,11,12,13,16)/t8-/m0/s1" 2JX InChIKey InChI 1.03 WDUGNJIRKJHDNF-QMMMGPOBSA-N 2JX SMILES_CANONICAL CACTVS 3.385 "S=C1NN=C(N1)[C@@H]2COc3ccccc3O2" 2JX SMILES CACTVS 3.385 "S=C1NN=C(N1)[CH]2COc3ccccc3O2" 2JX SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)OC[C@H](O2)C3=NNC(=S)N3" 2JX SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)OCC(O2)C3=NNC(=S)N3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2JX "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(2R)-2,3-dihydro-1,4-benzodioxin-2-yl]-2,4-dihydro-3H-1,2,4-triazole-3-thione" 2JX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(3R)-2,3-dihydro-1,4-benzodioxin-3-yl]-1,4-dihydro-1,2,4-triazole-5-thione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2JX "Create component" 2013-11-13 RCSB 2JX "Initial release" 2014-09-17 RCSB 2JX "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 2JX _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #