data_2KM # _chem_comp.id 2KM _chem_comp.name "L-chiro-inositol 2,3,5-trisphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C6 H15 O15 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "[(1R,2R,3R,4R,5S,6R)-2,3,5-tris(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-23 _chem_comp.pdbx_modified_date 2024-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 420.096 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2KM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PPC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2KM C1 C1 C 0 1 N N R N N N 12.309 28.083 84.045 -0.040 1.980 0.653 C1 2KM 1 2KM C2 C2 C 0 1 N N R N N N 12.167 28.066 85.546 0.930 1.027 -0.047 C2 2KM 2 2KM C3 C3 C 0 1 N N R N N N 11.543 29.349 86.038 0.373 -0.397 0.006 C3 2KM 3 2KM C4 C4 C 0 1 N N S N N N 10.146 29.501 85.487 -0.984 -0.440 -0.700 C4 2KM 4 2KM C5 C5 C 0 1 N N R N N N 10.212 29.458 83.966 -1.954 0.514 0.000 C5 2KM 5 2KM C6 C6 C 0 1 N N R N N N 10.925 28.211 83.439 -1.396 1.937 -0.053 C6 2KM 6 2KM O1 O1 O 0 1 N N N N N N 13.147 29.183 83.678 -0.199 1.582 2.016 O1 2KM 7 2KM O23 O2 O 0 1 N N N N N N 13.054 30.950 88.412 0.852 -3.599 0.530 O23 2KM 8 2KM O2 O3 O 0 1 N N N N N N 13.473 27.981 86.122 2.197 1.067 0.612 O2 2KM 9 2KM O22 O4 O 0 1 N N N N N N 15.313 26.812 87.435 4.802 1.308 0.874 O22 2KM 10 2KM O6 O5 O 0 1 N N N N N N 10.158 27.036 83.697 -1.237 2.336 -1.416 O6 2KM 11 2KM O32 O6 O 0 1 N N N N N N 14.028 25.726 85.505 3.757 0.666 -1.332 O32 2KM 12 2KM P2 P1 P 0 1 N N N N N N 13.982 26.591 86.746 3.558 1.505 -0.129 P2 2KM 13 2KM O15 O7 O 0 1 N N N N N N 9.485 29.255 81.141 -4.780 0.875 1.284 O15 2KM 14 2KM O35 O8 O 0 1 N N N N N N 7.021 29.310 81.616 -5.826 0.232 -0.921 O35 2KM 15 2KM O33 O9 O 0 1 N N N N N N 10.674 31.523 87.763 2.688 -2.049 1.303 O33 2KM 16 2KM P3 P2 P 0 1 N N N N N N 11.594 30.554 88.473 1.977 -2.532 0.097 P3 2KM 17 2KM O5 O10 O 0 1 N N N N N N 8.861 29.441 83.471 -3.221 0.473 -0.659 O5 2KM 18 2KM O12 O11 O 0 1 N N N N N N 12.881 26.169 87.702 3.458 3.052 -0.564 O12 2KM 19 2KM O13 O12 O 0 1 N N N N N N 11.137 30.138 89.853 3.028 -3.234 -0.900 O13 2KM 20 2KM O25 O13 O 0 1 N N N N N N 8.433 31.360 82.033 -4.482 -1.511 0.517 O25 2KM 21 2KM O3 O14 O 0 1 N N N N N N 11.449 29.291 87.471 1.279 -1.288 -0.649 O3 2KM 22 2KM P5 P3 P 0 1 N N N N N N 8.379 29.849 81.988 -4.582 0.036 0.082 P5 2KM 23 2KM O4 O15 O 0 1 N N N N N N 9.634 30.743 85.957 -1.505 -1.770 -0.651 O4 2KM 24 2KM H1 H1 H 0 1 N N N N N N 12.759 27.135 83.714 0.358 2.995 0.616 H1 2KM 25 2KM H2 H2 H 0 1 N N N N N N 11.547 27.210 85.851 1.052 1.331 -1.087 H2 2KM 26 2KM H3 H3 H 0 1 N N N N N N 12.159 30.204 85.724 0.251 -0.701 1.045 H3 2KM 27 2KM H4 H4 H 0 1 N N N N N N 9.523 28.668 85.844 -0.862 -0.136 -1.740 H4 2KM 28 2KM H5 H5 H 0 1 N N N N N N 10.739 30.353 83.603 -2.075 0.209 1.040 H5 2KM 29 2KM H6 H6 H 0 1 N N N N N N 11.043 28.329 82.352 -2.087 2.617 0.446 H6 2KM 30 2KM H7 H7 H 0 1 N N N N N N 14.004 29.074 84.072 -0.802 2.143 2.522 H7 2KM 31 2KM H8 H8 H 0 1 N N N N N N 13.143 31.761 87.925 0.346 -3.959 -0.212 H8 2KM 32 2KM H9 H9 H 0 1 N N N N N N 15.996 26.354 86.960 5.657 1.553 0.493 H9 2KM 33 2KM H10 H10 H 0 1 N N N N N N 10.619 26.276 83.362 -0.886 3.231 -1.525 H10 2KM 34 2KM H11 H11 H 0 1 N N N N N N 7.111 28.686 80.906 -6.680 -0.013 -0.540 H11 2KM 35 2KM H12 H12 H 0 1 N N N N N N 12.414 25.425 87.339 3.328 3.661 0.176 H12 2KM 36 2KM H13 H13 H 0 1 N N N N N N 10.315 30.569 90.058 3.488 -3.993 -0.516 H13 2KM 37 2KM H14 H14 H 0 1 N N N N N N 9.165 31.667 81.511 -4.351 -2.120 -0.223 H14 2KM 38 2KM H15 H15 H 0 1 N N N N N N 10.121 31.016 86.726 -2.365 -1.872 -1.081 H15 2KM 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2KM O15 P5 DOUB N N 1 2KM O35 P5 SING N N 2 2KM P5 O25 SING N N 3 2KM P5 O5 SING N N 4 2KM C6 O6 SING N N 5 2KM C6 C5 SING N N 6 2KM C6 C1 SING N N 7 2KM O5 C5 SING N N 8 2KM O1 C1 SING N N 9 2KM C5 C4 SING N N 10 2KM C1 C2 SING N N 11 2KM C4 O4 SING N N 12 2KM C4 C3 SING N N 13 2KM O32 P2 DOUB N N 14 2KM C2 C3 SING N N 15 2KM C2 O2 SING N N 16 2KM C3 O3 SING N N 17 2KM O2 P2 SING N N 18 2KM P2 O22 SING N N 19 2KM P2 O12 SING N N 20 2KM O3 P3 SING N N 21 2KM O33 P3 DOUB N N 22 2KM O23 P3 SING N N 23 2KM P3 O13 SING N N 24 2KM C1 H1 SING N N 25 2KM C2 H2 SING N N 26 2KM C3 H3 SING N N 27 2KM C4 H4 SING N N 28 2KM C5 H5 SING N N 29 2KM C6 H6 SING N N 30 2KM O1 H7 SING N N 31 2KM O23 H8 SING N N 32 2KM O22 H9 SING N N 33 2KM O6 H10 SING N N 34 2KM O35 H11 SING N N 35 2KM O12 H12 SING N N 36 2KM O13 H13 SING N N 37 2KM O25 H14 SING N N 38 2KM O4 H15 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2KM InChI InChI 1.06 "InChI=1S/C6H15O15P3/c7-1-2(8)5(20-23(13,14)15)6(21-24(16,17)18)3(9)4(1)19-22(10,11)12/h1-9H,(H2,10,11,12)(H2,13,14,15)(H2,16,17,18)/t1-,2-,3+,4-,5-,6-/m1/s1" 2KM InChIKey InChI 1.06 MMWCIQZXVOZEGG-UOTPTPDRSA-N 2KM SMILES_CANONICAL CACTVS 3.385 "O[C@@H]1[C@@H](O)[C@@H](O[P](O)(O)=O)[C@H](O[P](O)(O)=O)[C@@H](O)[C@@H]1O[P](O)(O)=O" 2KM SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[P](O)(O)=O)[CH](O[P](O)(O)=O)[CH](O)[CH]1O[P](O)(O)=O" 2KM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[C@H]1([C@H]([C@H]([C@@H]([C@H]([C@@H]1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O)O" 2KM SMILES "OpenEye OEToolkits" 2.0.7 "C1(C(C(C(C(C1OP(=O)(O)O)O)OP(=O)(O)O)OP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id 2KM _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{R},2~{R},3~{R},4~{R},5~{S},6~{R})-2,3,5-tris(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2KM "Create component" 2023-07-12 PDBE 2KM "Initial release" 2024-02-28 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2KM _pdbx_chem_comp_synonyms.name "[(1R,2R,3R,4R,5S,6R)-2,3,5-tris(oxidanyl)-4,6-diphosphonooxy-cyclohexyl] dihydrogen phosphate" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? #