data_2LF # _chem_comp.id 2LF _chem_comp.name "(6S,7S,8S,10R)-2-amino-8-hydroxy-4-oxo-3,6,7,8,9,10-hexahydro-4H-7,10-epoxyazepino[1,2-e]purin-6-yl dihydrogen phosphate" _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H12 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-21 _chem_comp.pdbx_modified_date 2011-12-30 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.205 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2LF _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 2LFA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2LF P P P 0 1 N N N -7.375 -2.976 13.911 -3.332 1.388 0.068 P 2LF 1 2LF N1 N1 N 0 1 N N N -0.405 -5.834 17.082 4.255 1.419 0.247 N1 2LF 2 2LF C2 C2 C 0 1 N N N -1.074 -6.860 17.629 4.457 0.077 0.153 C2 2LF 3 2LF N2 N2 N 0 1 N N N -0.393 -7.663 18.387 5.739 -0.395 0.278 N2 2LF 4 2LF N3 N3 N 0 1 N N N -2.364 -7.099 17.483 3.488 -0.797 -0.052 N3 2LF 5 2LF C4 C4 C 0 1 Y N N -2.958 -6.171 16.699 2.234 -0.338 -0.175 C4 2LF 6 2LF C5 C5 C 0 1 Y N N -2.399 -5.076 16.084 1.961 1.046 -0.088 C5 2LF 7 2LF C6 C6 C 0 1 N N N -0.983 -4.887 16.270 3.016 1.964 0.139 C6 2LF 8 2LF O6 O6 O 0 1 N N N -0.227 -4.033 15.810 2.824 3.165 0.224 O6 2LF 9 2LF N7 N7 N 0 1 Y N N -3.396 -4.364 15.378 0.636 1.211 -0.252 N7 2LF 10 2LF C8 C8 C 0 1 Y N N -4.485 -5.049 15.627 0.083 0.052 -0.432 C8 2LF 11 2LF N9 N9 N 0 1 Y N N -4.272 -6.173 16.356 1.046 -0.932 -0.380 N9 2LF 12 2LF "C1'" "C1'" C 0 1 N N R -5.320 -7.094 16.795 0.695 -2.356 -0.531 "C1'" 2LF 13 2LF OP3 OP3 O 0 1 N Y N -8.426 -4.000 13.729 -4.503 0.704 -0.799 OP3 2LF 14 2LF "C2'" "C2'" C 0 1 N N N -6.004 -6.496 18.004 0.130 -2.798 0.845 "C2'" 2LF 15 2LF OP2 OP2 O 0 1 N N N -7.758 -1.569 14.148 -3.936 1.913 1.465 OP2 2LF 16 2LF "C3'" "C3'" C 0 1 N N S -6.985 -5.465 17.423 -1.347 -2.346 0.797 "C3'" 2LF 17 2LF "O3'" "O3'" O 0 1 N N N -8.260 -5.758 17.965 -2.216 -3.457 1.028 "O3'" 2LF 18 2LF "C4'" "C4'" C 0 1 N N S -6.896 -5.747 15.900 -1.537 -1.799 -0.629 "C4'" 2LF 19 2LF "O4'" "O4'" O 0 1 N N N -6.352 -7.070 15.822 -0.452 -2.383 -1.421 "O4'" 2LF 20 2LF "C5'" "C5'" C 0 1 N N S -5.912 -4.832 15.103 -1.373 -0.269 -0.677 "C5'" 2LF 21 2LF "O5'" "O5'" O 0 1 N N N -6.358 -3.479 15.069 -2.175 0.306 0.356 "O5'" 2LF 22 2LF HN1 HN1 H 0 1 N N N 0.573 -5.753 17.276 5.015 2.002 0.399 HN1 2LF 23 2LF "H1'" "H1'" H 0 1 N N N -4.879 -8.086 16.973 1.526 -2.972 -0.876 "H1'" 2LF 24 2LF "H2'" "H2'" H 0 1 N N N -5.276 -6.017 18.675 0.198 -3.880 0.958 "H2'" 2LF 25 2LF "H'2'" "H'2'" H 0 0 N N N -6.535 -7.267 18.581 0.658 -2.295 1.656 "H'2'" 2LF 26 2LF HN2 HN2 H 0 1 N N N 0.587 -7.513 18.521 5.914 -1.347 0.215 HN2 2LF 27 2LF HN2A HN2A H 0 0 N N N -0.848 -8.432 18.837 6.471 0.224 0.429 HN2A 2LF 28 2LF "H3'" "H3'" H 0 1 N N N -6.780 -4.407 17.644 -1.529 -1.563 1.533 "H3'" 2LF 29 2LF "H4'" "H4'" H 0 1 N N N -7.892 -5.584 15.464 -2.506 -2.099 -1.029 "H4'" 2LF 30 2LF "H5'" "H5'" H 0 1 N N N -5.895 -5.118 14.041 -1.680 0.127 -1.645 "H5'" 2LF 31 2LF HOP3 HOP3 H 0 0 N N N -8.472 -4.248 12.813 -4.922 -0.053 -0.367 HOP3 2LF 32 2LF HOP2 HOP2 H 0 0 N N N -7.581 -1.057 13.368 -4.640 2.569 1.368 HOP2 2LF 33 2LF "HO3'" "HO3'" H 0 0 N Y N -8.898 -5.139 17.628 -2.101 -3.874 1.893 "HO3'" 2LF 34 2LF OP1 OP1 O 0 1 N N N -6.912 -2.843 12.565 -2.764 2.530 -0.684 OP1 2LF 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2LF P OP2 SING N N 1 2LF P "O5'" SING N N 2 2LF N1 HN1 SING N N 3 2LF N1 C2 SING N N 4 2LF C2 N2 SING N N 5 2LF N2 HN2A SING N N 6 2LF N2 HN2 SING N N 7 2LF N3 C2 DOUB N N 8 2LF C4 N3 SING N N 9 2LF C5 C4 DOUB Y N 10 2LF C5 C6 SING N N 11 2LF C6 N1 SING N N 12 2LF O6 C6 DOUB N N 13 2LF N7 C5 SING Y N 14 2LF N7 C8 DOUB Y N 15 2LF C8 N9 SING Y N 16 2LF N9 C4 SING Y N 17 2LF N9 "C1'" SING N N 18 2LF "C1'" "H1'" SING N N 19 2LF "C1'" "C2'" SING N N 20 2LF OP3 P SING N N 21 2LF OP3 HOP3 SING N N 22 2LF "C2'" "H'2'" SING N N 23 2LF "C2'" "H2'" SING N N 24 2LF OP2 HOP2 SING N N 25 2LF "C3'" "C2'" SING N N 26 2LF "C3'" "H3'" SING N N 27 2LF "C3'" "O3'" SING N N 28 2LF "O3'" "HO3'" SING N N 29 2LF "C4'" "C3'" SING N N 30 2LF "O4'" "C1'" SING N N 31 2LF "O4'" "C4'" SING N N 32 2LF "C5'" C8 SING N N 33 2LF "C5'" "C4'" SING N N 34 2LF "O5'" "C5'" SING N N 35 2LF "H4'" "C4'" SING N N 36 2LF "H5'" "C5'" SING N N 37 2LF P OP1 DOUB N N 38 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2LF SMILES ACDLabs 12.01 "O=P(O)(O)OC3c2nc1C(=O)NC(=Nc1n2C4OC3C(O)C4)N" 2LF InChI InChI 1.03 "InChI=1S/C10H12N5O7P/c11-10-13-7-4(9(17)14-10)12-8-6(22-23(18,19)20)5-2(16)1-3(21-5)15(7)8/h2-3,5-6,16H,1H2,(H2,18,19,20)(H3,11,13,14,17)/t2-,3+,5-,6+/m0/s1" 2LF InChIKey InChI 1.03 WUVBJPHCDIFJHL-YELPUOMLSA-N 2LF SMILES_CANONICAL CACTVS 3.370 "NC1=Nc2n3[C@H]4C[C@H](O)[C@H](O4)[C@@H](O[P](O)(O)=O)c3nc2C(=O)N1" 2LF SMILES CACTVS 3.370 "NC1=Nc2n3[CH]4C[CH](O)[CH](O4)[CH](O[P](O)(O)=O)c3nc2C(=O)N1" 2LF SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C1[C@@H]([C@H]2[C@H](c3nc4c(n3[C@@H]1O2)N=C(NC4=O)N)OP(=O)(O)O)O" 2LF SMILES "OpenEye OEToolkits" 1.7.2 "C1C(C2C(c3nc4c(n3C1O2)N=C(NC4=O)N)OP(=O)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2LF "SYSTEMATIC NAME" ACDLabs 12.01 "(6S,7S,8S,10R)-2-amino-8-hydroxy-4-oxo-3,6,7,8,9,10-hexahydro-4H-7,10-epoxyazepino[1,2-e]purin-6-yl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2LF "Create component" 2011-07-21 RCSB 2LF "Modify parent residue" 2011-07-27 RCSB #