data_2LM # _chem_comp.id 2LM _chem_comp.name "(2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]-4-(methylsulfanyl)butanoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H19 N2 O7 P S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-03-03 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 378.338 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2LM _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3AEL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2LM C C C 0 1 N N N -7.199 -7.063 17.568 -1.227 2.848 -2.102 C 2LM 1 2LM N N N 0 1 N N N -7.397 -4.805 18.314 0.196 2.356 -0.240 N 2LM 2 2LM O1 O1 O 0 1 N N N -6.459 -8.051 17.445 -2.271 2.625 -2.681 O1 2LM 3 2LM P P P 0 1 N N N -5.811 -1.522 22.416 -0.516 -3.633 -0.494 P 2LM 4 2LM N1 N1 N 0 1 Y N N -9.015 -0.052 17.463 4.127 -0.589 0.182 N1 2LM 5 2LM C2 C2 C 0 1 Y N N -8.783 -1.072 16.599 4.214 0.666 0.577 C2 2LM 6 2LM C3 C3 C 0 1 Y N N -8.243 -2.264 17.082 3.070 1.407 0.837 C3 2LM 7 2LM O3 O3 O 0 1 N N N -8.005 -3.292 16.219 3.164 2.700 1.244 O3 2LM 8 2LM C4 C4 C 0 1 Y N N -7.917 -2.419 18.458 1.825 0.807 0.674 C4 2LM 9 2LM C5 C5 C 0 1 Y N N -8.212 -1.354 19.309 1.780 -0.513 0.257 C5 2LM 10 2LM C6 C6 C 0 1 Y N N -8.738 -0.166 18.784 2.963 -1.187 0.019 C6 2LM 11 2LM CA CA C 0 1 N N N -7.018 -6.072 18.649 -0.905 2.122 -0.851 CA 2LM 12 2LM CB CB C 0 1 N N N -6.517 -6.458 20.067 -1.872 1.107 -0.297 CB 2LM 13 2LM SD SD S 0 1 N N N -7.807 -8.440 21.737 -3.908 0.544 1.440 SD 2LM 14 2LM CE CE C 0 1 N N N -9.432 -9.004 21.299 -4.837 1.496 2.674 CE 2LM 15 2LM CG CG C 0 1 N N N -6.692 -7.965 20.398 -2.743 1.765 0.774 CG 2LM 16 2LM C2A C2A C 0 1 N N N -9.128 -0.883 15.113 5.569 1.301 0.749 C2A 2LM 17 2LM C4A C4A C 0 1 N N N -7.389 -3.713 19.014 0.557 1.575 0.946 C4A 2LM 18 2LM C5A C5A C 0 1 N N N -7.919 -1.418 20.801 0.456 -1.208 0.067 C5A 2LM 19 2LM OP1 OP1 O 0 1 N N N -4.447 -0.880 22.273 -1.386 -3.124 -1.577 OP1 2LM 20 2LM OP2 OP2 O 0 1 N N N -5.835 -2.983 22.334 -1.382 -3.809 0.852 OP2 2LM 21 2LM OP3 OP3 O 0 1 N N N -6.718 -0.991 23.518 0.101 -5.056 -0.925 OP3 2LM 22 2LM OP4 OP4 O 0 1 N N N -6.545 -1.034 21.045 0.680 -2.587 -0.230 OP4 2LM 23 2LM O2 O2 O 0 1 N N N -8.166 -6.927 16.779 -0.361 3.750 -2.600 O2 2LM 24 2LM HO3 HO3 H 0 1 N N N -7.640 -4.028 16.696 3.173 3.341 0.520 HO3 2LM 25 2LM H6 H6 H 0 1 N N N -8.925 0.670 19.442 2.934 -2.216 -0.307 H6 2LM 26 2LM HB HB H 0 1 N N N -5.446 -6.216 20.129 -2.505 0.732 -1.101 HB 2LM 27 2LM HBA HBA H 0 1 N N N -7.092 -5.877 20.803 -1.317 0.279 0.144 HBA 2LM 28 2LM HE HE H 0 1 N N N -9.992 -9.255 22.212 -5.578 0.852 3.147 HE 2LM 29 2LM HEA HEA H 0 1 N N N -9.961 -8.209 20.752 -4.151 1.878 3.430 HEA 2LM 30 2LM HEB HEB H 0 1 N N N -9.351 -9.897 20.661 -5.339 2.331 2.185 HEB 2LM 31 2LM HG HG H 0 1 N N N -7.080 -8.441 19.486 -2.110 2.140 1.578 HG 2LM 32 2LM HGA HGA H 0 1 N N N -5.696 -8.341 20.674 -3.298 2.593 0.333 HGA 2LM 33 2LM H2A H2A H 0 1 N N N -9.542 0.124 14.957 5.874 1.765 -0.190 H2A 2LM 34 2LM H2A1 H2A1 H 0 0 N N N -8.218 -1.002 14.507 5.518 2.061 1.529 H2A1 2LM 35 2LM H2A2 H2A2 H 0 0 N N N -9.871 -1.636 14.811 6.295 0.539 1.031 H2A2 2LM 36 2LM H4A H4A H 0 1 N N N -8.001 -3.926 19.903 0.713 2.247 1.790 H4A 2LM 37 2LM H5A H5A H 0 1 N N N -8.591 -0.730 21.335 -0.133 -1.124 0.981 H5A 2LM 38 2LM H5A1 H5A1 H 0 0 N N N -8.081 -2.445 21.161 -0.084 -0.741 -0.757 H5A1 2LM 39 2LM HOP2 HOP2 H 0 0 N N N -4.953 -3.308 22.198 -0.874 -4.140 1.606 HOP2 2LM 40 2LM HOP3 HOP3 H 0 0 N N N -6.274 -0.293 23.985 -0.564 -5.736 -1.100 HOP3 2LM 41 2LM H4A1 H4A1 H 0 0 N N N -6.333 -3.523 19.255 -0.247 0.878 1.180 H4A1 2LM 42 2LM H2 H2 H 0 1 N N N -8.181 -7.654 16.167 -0.613 4.196 -3.420 H2 2LM 43 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2LM C O1 DOUB N N 1 2LM C CA SING N N 2 2LM C O2 SING N N 3 2LM N CA DOUB N N 4 2LM N C4A SING N N 5 2LM P OP1 DOUB N N 6 2LM P OP2 SING N N 7 2LM P OP3 SING N N 8 2LM P OP4 SING N N 9 2LM N1 C2 DOUB Y N 10 2LM N1 C6 SING Y N 11 2LM C2 C3 SING Y N 12 2LM C2 C2A SING N N 13 2LM C3 O3 SING N N 14 2LM C3 C4 DOUB Y N 15 2LM C4 C5 SING Y N 16 2LM C4 C4A SING N N 17 2LM C5 C6 DOUB Y N 18 2LM C5 C5A SING N N 19 2LM CA CB SING N N 20 2LM CB CG SING N N 21 2LM SD CE SING N N 22 2LM SD CG SING N N 23 2LM C5A OP4 SING N N 24 2LM O3 HO3 SING N N 25 2LM C6 H6 SING N N 26 2LM CB HB SING N N 27 2LM CB HBA SING N N 28 2LM CE HE SING N N 29 2LM CE HEA SING N N 30 2LM CE HEB SING N N 31 2LM CG HG SING N N 32 2LM CG HGA SING N N 33 2LM C2A H2A SING N N 34 2LM C2A H2A1 SING N N 35 2LM C2A H2A2 SING N N 36 2LM C4A H4A SING N N 37 2LM C5A H5A SING N N 38 2LM C5A H5A1 SING N N 39 2LM OP2 HOP2 SING N N 40 2LM OP3 HOP3 SING N N 41 2LM C4A H4A1 SING N N 42 2LM O2 H2 SING N N 43 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2LM SMILES ACDLabs 12.01 "O=C(O)/C(=N/Cc1c(cnc(c1O)C)COP(=O)(O)O)CCSC" 2LM SMILES_CANONICAL CACTVS 3.370 "CSCCC(=NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" 2LM SMILES CACTVS 3.370 "CSCCC(=NCc1c(O)c(C)ncc1CO[P](O)(O)=O)C(O)=O" 2LM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "Cc1c(c(c(cn1)COP(=O)(O)O)C/N=C(\CCSC)/C(=O)O)O" 2LM SMILES "OpenEye OEToolkits" 1.7.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CN=C(CCSC)C(=O)O)O" 2LM InChI InChI 1.03 "InChI=1S/C13H19N2O7PS/c1-8-12(16)10(6-15-11(13(17)18)3-4-24-2)9(5-14-8)7-22-23(19,20)21/h5,16H,3-4,6-7H2,1-2H3,(H,17,18)(H2,19,20,21)/b15-11+" 2LM InChIKey InChI 1.03 RNHGWTJOZCEIDD-RVDMUPIBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2LM "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)imino]-4-(methylsulfanyl)butanoic acid" 2LM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2E)-2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylimino]-4-methylsulfanyl-butanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2LM "Create component" 2010-03-03 PDBJ 2LM "Modify aromatic_flag" 2011-06-04 RCSB 2LM "Modify descriptor" 2011-06-04 RCSB #