data_2MC
#
_chem_comp.id 2MC
_chem_comp.name "METHACRYLYL-COENZYME A"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H40 N7 O17 P3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-01-19
_chem_comp.pdbx_modified_date 2012-01-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 835.608
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2MC
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1RX0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2MC N1A AN1 N 0 1 Y N N 45.368 -25.573 45.428 -7.557 6.672 1.826 N1A 2MC 1
2MC C2A AC2 C 0 1 Y N N 46.390 -24.793 45.935 -8.131 5.539 2.187 C2A 2MC 2
2MC N3A AN3 N 0 1 Y N N 47.587 -25.260 46.442 -7.693 4.365 1.783 N3A 2MC 3
2MC C4A AC4 C 0 1 Y N N 47.707 -26.695 46.407 -6.636 4.276 0.981 C4A 2MC 4
2MC C5A AC5 C 0 1 Y N N 46.739 -27.610 45.918 -5.990 5.454 0.568 C5A 2MC 5
2MC C6A AC6 C 0 1 Y N N 45.503 -26.985 45.401 -6.496 6.682 1.026 C6A 2MC 6
2MC N6A AN6 N 0 1 N N N 44.499 -27.706 44.904 -5.902 7.875 0.653 N6A 2MC 7
2MC N7A AN7 N 0 1 Y N N 47.193 -28.932 46.039 -4.960 5.085 -0.230 N7A 2MC 8
2MC C8A AC8 C 0 1 Y N N 48.376 -28.815 46.572 -4.933 3.788 -0.332 C8A 2MC 9
2MC N9A AN9 N 0 1 Y N N 48.773 -27.488 46.831 -5.947 3.243 0.398 N9A 2MC 10
2MC C1B AC1* C 0 1 N N R 50.055 -26.970 47.425 -6.247 1.815 0.534 C1B 2MC 11
2MC C2B AC2* C 0 1 N N R 50.210 -27.446 48.901 -7.324 1.383 -0.492 C2B 2MC 12
2MC O2B AO2* O 0 1 N N N 49.466 -26.697 49.918 -8.638 1.606 0.023 O2B 2MC 13
2MC C3B AC3* C 0 1 N N S 51.754 -27.443 49.063 -7.040 -0.132 -0.642 C3B 2MC 14
2MC O3B AO3* O 0 1 N N N 52.195 -26.135 49.528 -7.926 -0.891 0.182 O3B 2MC 15
2MC P3B AP3* P 0 1 N N N 53.326 -25.886 50.679 -8.926 -2.009 -0.403 P3B 2MC 16
2MC O7A AO7 O 0 1 N N N 52.521 -25.157 51.704 -8.154 -3.001 -1.184 O7A 2MC 17
2MC O8A AO8 O 0 1 N N N 53.822 -27.230 51.164 -9.674 -2.750 0.815 O8A 2MC 18
2MC O9A AO9 O 0 1 N N N 54.309 -25.051 49.930 -10.018 -1.308 -1.356 O9A 2MC 19
2MC C4B AC4* C 0 1 N N R 52.319 -27.799 47.643 -5.585 -0.292 -0.161 C4B 2MC 20
2MC O4B AO4* O 0 1 N N N 51.237 -27.474 46.704 -5.098 1.018 0.173 O4B 2MC 21
2MC C5B AC5* C 0 1 N N N 52.661 -29.323 47.498 -4.731 -0.896 -1.278 C5B 2MC 22
2MC O5B AO5* O 0 1 N N N 51.582 -30.117 48.031 -3.413 -1.149 -0.786 O5B 2MC 23
2MC P1A AP1 P 0 1 N N R 51.618 -31.510 48.747 -2.246 -1.785 -1.694 P1A 2MC 24
2MC O1A AO1 O 0 1 N N N 52.612 -31.462 49.851 -2.712 -3.065 -2.273 O1A 2MC 25
2MC O2A AO2 O 0 1 N N N 50.167 -31.766 49.078 -1.873 -0.763 -2.881 O2A 2MC 26
2MC O3A AO3 O 0 1 N N N 52.087 -32.406 47.502 -0.943 -2.050 -0.785 O3A 2MC 27
2MC P2A AP2 P 0 1 N N S 51.794 -33.984 47.251 0.402 -2.912 -0.983 P2A 2MC 28
2MC O4A AO4 O 0 1 N N N 53.027 -34.562 46.621 0.072 -4.197 -1.640 O4A 2MC 29
2MC O5A AO5 O 0 1 N N N 51.426 -34.595 48.596 1.437 -2.090 -1.902 O5A 2MC 30
2MC O6A AO6 O 0 1 N N N 50.545 -34.125 46.212 1.070 -3.200 0.453 O6A 2MC 31
2MC CBP PC11 C 0 1 N N N 48.162 -34.149 45.497 2.592 -4.090 2.107 CBP 2MC 32
2MC CCP PC12 C 0 1 N N N 49.220 -33.678 46.511 2.221 -4.030 0.623 CCP 2MC 33
2MC CDP PC13 C 0 1 N N N 48.093 -35.716 45.495 2.901 -2.679 2.612 CDP 2MC 34
2MC CEP PC14 C 0 1 N N N 46.842 -33.591 45.971 1.421 -4.671 2.902 CEP 2MC 35
2MC CAP PC10 C 0 1 N N R 48.642 -33.594 44.028 3.823 -4.979 2.289 CAP 2MC 36
2MC OAP PO10 O 0 1 N N N 49.784 -34.325 43.432 3.494 -6.326 1.943 OAP 2MC 37
2MC C9P PC9 C 0 1 N N N 47.562 -33.634 42.920 4.934 -4.488 1.397 C9P 2MC 38
2MC O9P PO9 O 0 1 N N N 46.828 -32.650 42.748 5.297 -5.160 0.455 O9P 2MC 39
2MC N8P PN8 N 0 1 N N N 47.525 -34.842 42.197 5.524 -3.302 1.646 N8P 2MC 40
2MC C7P PC7 C 0 1 N N N 46.589 -35.107 41.117 6.536 -2.779 0.724 C7P 2MC 41
2MC C6P PC6 C 0 1 N N N 47.186 -34.486 39.855 7.041 -1.428 1.235 C6P 2MC 42
2MC C5P PC5 C 0 1 N N N 46.151 -34.029 38.848 8.082 -0.891 0.287 C5P 2MC 43
2MC O5P PO5 O 0 1 N N N 45.163 -33.317 39.186 8.389 -1.525 -0.700 O5P 2MC 44
2MC N4P PN4 N 0 1 N N N 46.415 -34.475 37.561 8.672 0.296 0.535 N4P 2MC 45
2MC C3P PC3 C 0 1 N N N 45.804 -33.799 36.457 9.684 0.818 -0.386 C3P 2MC 46
2MC C2P PC2 C 0 1 N N N 46.635 -33.745 35.202 10.189 2.169 0.124 C2P 2MC 47
2MC S1P PS1 S 0 1 N N N 45.754 -32.660 34.041 11.439 2.815 -1.014 S1P 2MC 48
2MC C1 C1 C 0 1 N N N 44.259 -33.465 33.430 11.835 4.330 -0.207 C1 2MC 49
2MC O2 O2 O 0 1 N N N 43.935 -34.575 33.863 11.275 4.631 0.830 O2 2MC 50
2MC C2 C2 C 0 1 N N N 43.405 -32.749 32.362 12.843 5.231 -0.786 C2 2MC 51
2MC C3 C3 C 0 1 N N N 42.290 -33.320 31.877 13.142 6.374 -0.177 C3 2MC 52
2MC C2M C2M C 0 1 N N N 43.846 -31.365 31.847 13.538 4.857 -2.071 C2M 2MC 53
2MC H2 H2 H 0 1 N N N 46.237 -23.701 45.935 -8.991 5.576 2.838 H2 2MC 54
2MC HN61 1HN6 H 0 0 N N N 44.285 -27.374 43.963 -6.260 8.717 0.975 HN61 2MC 55
2MC HN62 2HN6 H 0 0 N N N 44.596 -28.721 44.885 -5.127 7.870 0.069 HN62 2MC 56
2MC H8 H8 H 0 1 N N N 48.966 -29.724 46.778 -4.214 3.227 -0.909 H8 2MC 57
2MC "H1'" H1* H 0 1 N N N 49.999 -25.859 47.354 -6.570 1.587 1.550 "H1'" 2MC 58
2MC "H2'" H2* H 0 1 N N N 49.739 -28.440 49.082 -7.187 1.901 -1.441 "H2'" 2MC 59
2MC H3 H3 H 0 1 N N N 49.561 -26.987 50.818 -8.832 2.533 0.219 H3 2MC 60
2MC "H3'" H3* H 0 1 N N N 52.118 -28.177 49.820 -7.135 -0.436 -1.685 "H3'" 2MC 61
2MC HO8 HO8 H 0 1 N N N 54.480 -27.085 51.834 -10.294 -3.438 0.535 HO8 2MC 62
2MC HO9 HO9 H 0 1 N N N 54.967 -24.906 50.600 -10.561 -0.644 -0.909 HO9 2MC 63
2MC "H4'" H4* H 0 1 N N N 53.263 -27.236 47.457 -5.555 -0.934 0.720 "H4'" 2MC 64
2MC "H5'1" 1H5* H 0 0 N N N 53.641 -29.579 47.964 -5.180 -1.831 -1.613 "H5'1" 2MC 65
2MC "H5'2" 2H5* H 0 0 N N N 52.906 -29.600 46.446 -4.679 -0.198 -2.113 "H5'2" 2MC 66
2MC HO2 HO2 H 0 1 N N N 50.189 -32.611 49.512 -1.559 0.099 -2.575 HO2 2MC 67
2MC HO5 HO5 H 0 1 N N N 51.255 -35.518 48.449 1.697 -1.235 -1.532 HO5 2MC 68
2MC H121 1H12 H 0 0 N N N 49.195 -32.568 46.618 2.000 -5.035 0.264 H121 2MC 69
2MC H122 2H12 H 0 0 N N N 48.930 -33.973 47.547 3.055 -3.616 0.057 H122 2MC 70
2MC H131 1H13 H 0 0 N N N 47.911 -36.130 46.514 1.993 -2.077 2.588 H131 2MC 71
2MC H132 2H13 H 0 0 N N N 47.327 -36.057 44.761 3.275 -2.734 3.635 H132 2MC 72
2MC H133 3H13 H 0 0 N N N 49.090 -36.180 45.308 3.657 -2.222 1.973 H133 2MC 73
2MC H141 1H14 H 0 0 N N N 46.855 -32.485 46.116 1.240 -5.698 2.584 H141 2MC 74
2MC H142 2H14 H 0 0 N N N 46.076 -33.932 45.237 1.662 -4.657 3.965 H142 2MC 75
2MC H143 3H14 H 0 0 N N N 46.598 -33.864 47.024 0.528 -4.072 2.724 H143 2MC 76
2MC H1 H1 H 0 1 N N N 48.910 -32.547 44.301 4.149 -4.940 3.329 H1 2MC 77
2MC H10 H10 H 0 1 N N N 50.062 -34.004 42.582 3.196 -6.435 1.029 H10 2MC 78
2MC HN8 HN8 H 0 1 N N N 48.204 -35.554 42.467 5.278 -2.794 2.435 HN8 2MC 79
2MC H71 1H7 H 0 1 N N N 45.555 -34.752 41.335 7.369 -3.480 0.664 H71 2MC 80
2MC H72 2H7 H 0 1 N N N 46.345 -36.189 41.002 6.095 -2.652 -0.265 H72 2MC 81
2MC H61 1H6 H 0 1 N N N 47.913 -35.185 39.380 6.208 -0.728 1.295 H61 2MC 82
2MC H62 2H6 H 0 1 N N N 47.874 -33.649 40.118 7.482 -1.555 2.224 H62 2MC 83
2MC HN4 HN4 H 0 1 N N N 47.037 -35.273 37.431 8.426 0.803 1.324 HN4 2MC 84
2MC H31 1H3 H 0 1 N N N 45.496 -32.771 36.759 10.516 0.118 -0.447 H31 2MC 85
2MC H32 2H3 H 0 1 N N N 44.806 -34.245 36.238 9.243 0.945 -1.375 H32 2MC 86
2MC H21 1H2 H 0 1 N N N 46.861 -34.752 34.779 9.356 2.869 0.184 H21 2MC 87
2MC H22 2H2 H 0 1 N N N 47.689 -33.431 35.385 10.630 2.042 1.113 H22 2MC 88
2MC H11 1H1 H 0 1 N N N 41.680 -32.808 31.114 13.882 7.035 -0.603 H11 2MC 89
2MC H12 2H1 H 0 1 N N N 41.974 -34.310 32.246 12.645 6.641 0.743 H12 2MC 90
2MC H2M1 1H2M H 0 0 N N N 44.894 -31.440 31.475 13.165 3.894 -2.419 H2M1 2MC 91
2MC H2M2 2H2M H 0 0 N N N 43.229 -30.848 31.076 13.339 5.618 -2.826 H2M2 2MC 92
2MC H2M3 3H2M H 0 0 N N N 43.972 -30.683 32.720 14.612 4.790 -1.897 H2M3 2MC 93
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2MC N1A C2A DOUB Y N 1
2MC N1A C6A SING Y N 2
2MC C2A N3A SING Y N 3
2MC C2A H2 SING N N 4
2MC N3A C4A DOUB Y N 5
2MC C4A C5A SING Y N 6
2MC C4A N9A SING Y N 7
2MC C5A C6A DOUB Y N 8
2MC C5A N7A SING Y N 9
2MC C6A N6A SING N N 10
2MC N6A HN61 SING N N 11
2MC N6A HN62 SING N N 12
2MC N7A C8A DOUB Y N 13
2MC C8A N9A SING Y N 14
2MC C8A H8 SING N N 15
2MC N9A C1B SING N N 16
2MC C1B C2B SING N N 17
2MC C1B O4B SING N N 18
2MC C1B "H1'" SING N N 19
2MC C2B O2B SING N N 20
2MC C2B C3B SING N N 21
2MC C2B "H2'" SING N N 22
2MC O2B H3 SING N N 23
2MC C3B O3B SING N N 24
2MC C3B C4B SING N N 25
2MC C3B "H3'" SING N N 26
2MC O3B P3B SING N N 27
2MC P3B O7A DOUB N N 28
2MC P3B O8A SING N N 29
2MC P3B O9A SING N N 30
2MC O8A HO8 SING N N 31
2MC O9A HO9 SING N N 32
2MC C4B O4B SING N N 33
2MC C4B C5B SING N N 34
2MC C4B "H4'" SING N N 35
2MC C5B O5B SING N N 36
2MC C5B "H5'1" SING N N 37
2MC C5B "H5'2" SING N N 38
2MC O5B P1A SING N N 39
2MC P1A O1A DOUB N N 40
2MC P1A O2A SING N N 41
2MC P1A O3A SING N N 42
2MC O2A HO2 SING N N 43
2MC O3A P2A SING N N 44
2MC P2A O4A DOUB N N 45
2MC P2A O5A SING N N 46
2MC P2A O6A SING N N 47
2MC O5A HO5 SING N N 48
2MC O6A CCP SING N N 49
2MC CBP CCP SING N N 50
2MC CBP CDP SING N N 51
2MC CBP CEP SING N N 52
2MC CBP CAP SING N N 53
2MC CCP H121 SING N N 54
2MC CCP H122 SING N N 55
2MC CDP H131 SING N N 56
2MC CDP H132 SING N N 57
2MC CDP H133 SING N N 58
2MC CEP H141 SING N N 59
2MC CEP H142 SING N N 60
2MC CEP H143 SING N N 61
2MC CAP OAP SING N N 62
2MC CAP C9P SING N N 63
2MC CAP H1 SING N N 64
2MC OAP H10 SING N N 65
2MC C9P O9P DOUB N N 66
2MC C9P N8P SING N N 67
2MC N8P C7P SING N N 68
2MC N8P HN8 SING N N 69
2MC C7P C6P SING N N 70
2MC C7P H71 SING N N 71
2MC C7P H72 SING N N 72
2MC C6P C5P SING N N 73
2MC C6P H61 SING N N 74
2MC C6P H62 SING N N 75
2MC C5P O5P DOUB N N 76
2MC C5P N4P SING N N 77
2MC N4P C3P SING N N 78
2MC N4P HN4 SING N N 79
2MC C3P C2P SING N N 80
2MC C3P H31 SING N N 81
2MC C3P H32 SING N N 82
2MC C2P S1P SING N N 83
2MC C2P H21 SING N N 84
2MC C2P H22 SING N N 85
2MC S1P C1 SING N N 86
2MC C1 O2 DOUB N N 87
2MC C1 C2 SING N N 88
2MC C2 C3 DOUB N N 89
2MC C2 C2M SING N N 90
2MC C3 H11 SING N N 91
2MC C3 H12 SING N N 92
2MC C2M H2M1 SING N N 93
2MC C2M H2M2 SING N N 94
2MC C2M H2M3 SING N N 95
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2MC SMILES ACDLabs 10.04 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)\C(=C)C"
2MC InChI InChI 1.03
;InChI=1S/C25H40N7O17P3S/c1-13(2)24(37)53-8-7-27-15(33)5-6-28-22(36)19(35)25(3,4)10-46-52(43,44)49-51(41,42)45-9-14-18(48-50(38,39)40)17(34)23(47-14)32-12-31-16-20(26)29-11-30-21(16)32/h11-12,14,17-19,23,34-35H,1,5-10H2,2-4H3,(H,27,33)(H,28,36)(H,41,42)(H,43,44)(H2,26,29,30)(H2,38,39,40)/t14-,17-,18-,19+,23-/m1/s1
;
2MC InChIKey InChI 1.03 NPALUEYCDZWBOV-NDZSKPAWSA-N
2MC SMILES_CANONICAL CACTVS 3.385 "CC(=C)C(=O)SCCNC(=O)CCNC(=O)[C@H](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"
2MC SMILES CACTVS 3.385 "CC(=C)C(=O)SCCNC(=O)CCNC(=O)[CH](O)C(C)(C)CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23"
2MC SMILES_CANONICAL "OpenEye OEToolkits" 1.7.5 "CC(=C)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)CO[P@](=O)(O)O[P@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"
2MC SMILES "OpenEye OEToolkits" 1.7.5 "CC(=C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2MC "SYSTEMATIC NAME" ACDLabs 10.04
;S-{(9R,13S,15R)-17-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-9,13,15-trihydroxy-10,10-dimethyl-13,15-dioxido-4,8-dioxo-12,14,16-trioxa-3,7-diaza-13,15-diphosphaheptadec-1-yl} 2-methylprop-2-enethioate (non-preferred name)
;
2MC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0
"S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethyl] 2-methylprop-2-enethioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2MC "Create component" 2004-01-19 RCSB
2MC "Modify descriptor" 2011-06-04 RCSB
2MC "Modify descriptor" 2012-01-05 RCSB
2MC "Modify coordinates" 2012-01-05 RCSB
#