data_2MK # _chem_comp.id 2MK _chem_comp.name "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2R,3S)-1,2-dihydroxy-5-methylhexan-3-yl]-L-leucinamide" _chem_comp.type PEPTIDE-LIKE _chem_comp.pdbx_type HETAIN _chem_comp.formula "C27 H45 N3 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PHQ-Leu-Leu-Leu-ketoaldehyde, bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-04 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 507.663 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2MK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4NNW _chem_comp.pdbx_subcomponent_list "PHQ LEU LEU 2MJ" _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2MK C27 C27 C 0 1 N N N N N N 58.994 -135.550 35.248 -3.828 -0.577 0.299 C1 PHQ 1 2MK O36 O36 O 0 1 N N N N N N 58.906 -136.771 35.398 -3.852 -1.475 1.117 O1 PHQ 2 2MK O28 O28 O 0 1 N N N N N N 57.945 -134.815 34.750 -4.975 0.020 -0.080 O2 PHQ 3 2MK C29 C29 C 0 1 N N N N N N 56.969 -135.520 33.992 -6.201 -0.461 0.531 C2 PHQ 4 2MK C30 C30 C 0 1 Y N N N N N 55.705 -135.117 34.473 -7.371 0.319 -0.010 C3 PHQ 5 2MK C35 C35 C 0 1 Y N N N N N 54.699 -134.717 33.587 -7.779 1.480 0.620 C4 PHQ 6 2MK C34 C34 C 0 1 Y N N N N N 53.447 -134.327 34.060 -8.852 2.195 0.124 C5 PHQ 7 2MK C33 C33 C 0 1 Y N N N N N 53.183 -134.338 35.427 -9.518 1.751 -1.004 C6 PHQ 8 2MK C32 C32 C 0 1 Y N N N N N 54.175 -134.741 36.317 -9.109 0.591 -1.635 C7 PHQ 9 2MK C31 C31 C 0 1 Y N N N N N 55.429 -135.131 35.844 -8.033 -0.123 -1.141 C8 PHQ 10 2MK N26 N26 N 0 1 N N N N N N 60.128 -134.913 35.596 -2.654 -0.174 -0.226 N LEU 11 2MK C25 C25 C 0 1 N N S N N N 61.285 -135.622 36.173 -1.406 -0.819 0.191 CA LEU 12 2MK C24 C24 C 0 1 N N N N N N 60.983 -135.914 37.648 -0.256 0.132 -0.014 C LEU 13 2MK O41 O41 O 0 1 N N N N N N 60.369 -135.088 38.324 -0.458 1.241 -0.463 O LEU 14 2MK C37 C37 C 0 1 N N N N N N 62.533 -134.741 36.093 -1.180 -2.080 -0.647 CB LEU 15 2MK C38 C38 C 0 1 N N N N N N 62.973 -134.545 34.637 -2.282 -3.097 -0.345 CG LEU 16 2MK C39 C39 C 0 1 N N N N N N 63.722 -133.216 34.503 -2.128 -4.305 -1.271 CD1 LEU 17 2MK C40 C40 C 0 1 N N N N N N 63.893 -135.690 34.216 -2.171 -3.553 1.111 CD2 LEU 18 2MK N23 N23 N 0 1 N N N N N N 61.420 -137.096 38.120 0.998 -0.248 0.303 N LEU 19 2MK C22 C22 C 0 1 N N S N N N 61.194 -137.503 39.521 2.116 0.678 0.104 CA LEU 20 2MK C21 C21 C 0 1 N N N N N N 62.476 -137.264 40.330 3.391 -0.106 -0.071 C LEU 21 2MK O46 O46 O 0 1 N N N N N N 63.587 -137.371 39.815 3.368 -1.318 -0.034 O LEU 22 2MK C42 C42 C 0 1 N N N N N N 60.757 -138.971 39.581 2.243 1.593 1.323 CB LEU 23 2MK C43 C43 C 0 1 N N N N N N 59.591 -139.146 40.569 0.999 2.478 1.429 CG LEU 24 2MK C44 C44 C 0 1 N N N N N N 58.321 -138.443 40.053 1.069 3.304 2.715 CD1 LEU 25 2MK C45 C45 C 0 1 N N N N N N 59.329 -140.647 40.744 0.938 3.417 0.222 CD2 LEU 26 2MK C13 C13 C 0 1 N N N N N N 64.318 -134.140 42.308 6.270 0.840 -2.651 C13 2MJ 27 2MK C9 C9 C 0 1 N N N N N N 63.765 -138.740 43.689 5.378 -1.388 1.729 C9 2MJ 28 2MK C1 C1 C 0 1 N N R N N N 63.236 -137.292 43.853 6.384 -0.554 0.934 C1 2MJ 29 2MK O10 O10 O 0 1 N N N N N N 61.851 -137.285 44.279 6.662 0.657 1.639 O10 2MJ 30 2MK C11 C11 C 0 1 N N S N N N 63.337 -136.526 42.519 5.797 -0.221 -0.440 C11 2MJ 31 2MK C12 C12 C 0 1 N N N N N N 63.117 -135.006 42.702 6.803 0.613 -1.235 C12 2MJ 32 2MK C47 C47 C 0 1 N N N N N N 63.917 -132.661 42.451 7.214 1.777 -3.408 C47 2MJ 33 2MK C19 C19 C 0 1 N N N N N N 64.764 -134.428 40.864 6.185 -0.499 -3.385 C19 2MJ 34 2MK N20 N20 N 0 1 N N N N N N 62.261 -136.922 41.607 4.557 0.540 -0.269 N20 2MJ 35 2MK O1 O1 O 0 1 N Y N N N N 63.989 -139.440 44.976 5.970 -1.798 2.964 O1 2MJ 36 2MK H38 H38 H 0 1 N N N N N N 57.097 -136.604 34.127 -6.331 -1.519 0.300 H21 PHQ 37 2MK H39 H39 H 0 1 N N N N N N 57.065 -135.269 32.925 -6.145 -0.330 1.611 H22 PHQ 38 2MK H44 H44 H 0 1 N N N N N N 54.894 -134.710 32.525 -7.259 1.827 1.501 H41 PHQ 39 2MK H43 H43 H 0 1 N N N N N N 52.681 -134.016 33.365 -9.172 3.102 0.617 H51 PHQ 40 2MK H42 H42 H 0 1 N N N N N N 52.214 -134.036 35.795 -10.357 2.309 -1.391 H61 PHQ 41 2MK H41 H41 H 0 1 N N N N N N 53.973 -134.752 37.378 -9.629 0.243 -2.515 H71 PHQ 42 2MK H40 H40 H 0 1 N N N N N N 56.191 -135.446 36.541 -7.712 -1.027 -1.636 H81 PHQ 43 2MK H37 H37 H 0 1 N N N N N N 60.188 -133.924 35.458 -2.635 0.543 -0.878 H LEU 44 2MK H27 H27 H 0 1 N N N N N N 61.463 -136.566 35.638 -1.471 -1.090 1.244 HA LEU 45 2MK H28 H28 H 0 1 N N N N N N 63.349 -135.220 36.654 -1.204 -1.822 -1.706 HB2 LEU 46 2MK H29 H29 H 0 1 N N N N N N 62.310 -133.760 36.537 -0.210 -2.511 -0.400 HB3 LEU 47 2MK H30 H30 H 0 1 N N N N N N 62.086 -134.531 33.987 -3.257 -2.636 -0.508 HG LEU 48 2MK H34 H34 H 0 1 N N N N N N 63.061 -132.390 34.806 -1.154 -4.766 -1.108 HD11 LEU 49 2MK H35 H35 H 0 1 N N N N N N 64.612 -133.230 35.150 -2.914 -5.030 -1.056 HD12 LEU 50 2MK H36 H36 H 0 1 N N N N N N 64.031 -133.073 33.457 -2.208 -3.981 -2.308 HD13 LEU 51 2MK H31 H31 H 0 1 N N N N N N 63.357 -136.646 34.311 -2.280 -2.692 1.771 HD21 LEU 52 2MK H32 H32 H 0 1 N N N N N N 64.202 -135.546 33.170 -2.956 -4.278 1.326 HD22 LEU 53 2MK H33 H33 H 0 1 N N N N N N 64.782 -135.702 34.863 -1.196 -4.014 1.274 HD23 LEU 54 2MK H26 H26 H 0 1 N N N N N N 61.910 -137.715 37.506 1.160 -1.134 0.662 H LEU 55 2MK H2 H2 H 0 1 N N N N N N 60.392 -136.884 39.951 1.935 1.281 -0.786 HA LEU 56 2MK H17 H17 H 0 1 N N N N N N 60.435 -139.294 38.580 2.335 0.987 2.225 HB2 LEU 57 2MK H18 H18 H 0 1 N N N N N N 61.606 -139.588 39.910 3.128 2.221 1.216 HB3 LEU 58 2MK H19 H19 H 0 1 N N N N N N 59.873 -138.713 41.540 0.108 1.851 1.447 HG LEU 59 2MK H23 H23 H 0 1 N N N N N N 57.504 -138.583 40.776 1.960 3.931 2.697 HD11 LEU 60 2MK H24 H24 H 0 1 N N N N N N 58.521 -137.368 39.930 0.183 3.934 2.790 HD12 LEU 61 2MK H25 H25 H 0 1 N N N N N N 58.031 -138.875 39.084 1.112 2.635 3.574 HD13 LEU 62 2MK H20 H20 H 0 1 N N N N N N 58.497 -140.795 41.448 1.829 4.044 0.204 HD21 LEU 63 2MK H21 H21 H 0 1 N N N N N N 59.069 -141.090 39.771 0.888 2.828 -0.694 HD22 LEU 64 2MK H22 H22 H 0 1 N N N N N N 60.234 -141.133 41.138 0.052 4.047 0.298 HD23 LEU 65 2MK H1 H1 H 0 1 N N N N N N 65.154 -134.352 42.991 5.278 1.289 -2.599 H1 2MJ 66 2MK H3 H3 H 0 1 N N N N N N 63.031 -139.314 43.104 4.490 -0.790 1.933 H3 2MJ 67 2MK H4 H4 H 0 1 N N N N N N 64.719 -138.702 43.143 5.098 -2.269 1.151 H4 2MJ 68 2MK H5 H5 H 0 1 N N N N N N 63.858 -136.777 44.600 7.306 -1.121 0.807 H5 2MJ 69 2MK H6 H6 H 0 1 N N N N N N 61.770 -137.754 45.101 5.885 1.213 1.788 H6 2MJ 70 2MK H7 H7 H 0 1 N N N N N N 64.322 -136.705 42.062 5.585 -1.145 -0.978 H7 2MJ 71 2MK H8 H8 H 0 1 N N N N N N 62.889 -134.817 43.761 7.755 0.084 -1.286 H8 2MJ 72 2MK H9 H9 H 0 1 N N N N N N 62.259 -134.706 42.083 6.948 1.574 -0.743 H9 2MJ 73 2MK H10 H10 H 0 1 N N N N N N 63.600 -132.465 43.486 8.206 1.328 -3.460 H10 2MJ 74 2MK H11 H11 H 0 1 N N N N N N 64.778 -132.022 42.204 6.834 1.939 -4.416 H11 2MJ 75 2MK H12 H12 H 0 1 N N N N N N 63.087 -132.438 41.765 7.275 2.731 -2.885 H12 2MJ 76 2MK H13 H13 H 0 1 N N N N N N 65.048 -135.487 40.772 7.176 -0.948 -3.438 H13 2MJ 77 2MK H14 H14 H 0 1 N N N N N N 63.936 -134.210 40.174 5.512 -1.167 -2.847 H14 2MJ 78 2MK H15 H15 H 0 1 N N N N N N 65.627 -133.793 40.613 5.805 -0.337 -4.394 H15 2MJ 79 2MK H16 H16 H 0 1 N N N N N N 61.323 -136.938 41.954 4.576 1.510 -0.299 H16 2MJ 80 2MK H45 H45 H 0 1 N N N N N N 64.311 -140.318 44.808 5.387 -2.332 3.522 H45 2MJ 81 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2MK C35 C34 DOUB Y N 1 2MK C35 C30 SING Y N 2 2MK C29 C30 SING N N 3 2MK C29 O28 SING N N 4 2MK C34 C33 SING Y N 5 2MK C40 C38 SING N N 6 2MK C30 C31 DOUB Y N 7 2MK C39 C38 SING N N 8 2MK C38 C37 SING N N 9 2MK O28 C27 SING N N 10 2MK C27 O36 DOUB N N 11 2MK C27 N26 SING N N 12 2MK C33 C32 DOUB Y N 13 2MK N26 C25 SING N N 14 2MK C31 C32 SING Y N 15 2MK C37 C25 SING N N 16 2MK C25 C24 SING N N 17 2MK C24 N23 SING N N 18 2MK C24 O41 DOUB N N 19 2MK N23 C22 SING N N 20 2MK C22 C42 SING N N 21 2MK C22 C21 SING N N 22 2MK C42 C43 SING N N 23 2MK O46 C21 DOUB N N 24 2MK C44 C43 SING N N 25 2MK C21 N20 SING N N 26 2MK C43 C45 SING N N 27 2MK C19 C13 SING N N 28 2MK N20 C11 SING N N 29 2MK C13 C47 SING N N 30 2MK C13 C12 SING N N 31 2MK C11 C12 SING N N 32 2MK C11 C1 SING N N 33 2MK C9 C1 SING N N 34 2MK C1 O10 SING N N 35 2MK C9 O1 SING N N 36 2MK C13 H1 SING N N 37 2MK C22 H2 SING N N 38 2MK C9 H3 SING N N 39 2MK C9 H4 SING N N 40 2MK C1 H5 SING N N 41 2MK O10 H6 SING N N 42 2MK C11 H7 SING N N 43 2MK C12 H8 SING N N 44 2MK C12 H9 SING N N 45 2MK C47 H10 SING N N 46 2MK C47 H11 SING N N 47 2MK C47 H12 SING N N 48 2MK C19 H13 SING N N 49 2MK C19 H14 SING N N 50 2MK C19 H15 SING N N 51 2MK N20 H16 SING N N 52 2MK C42 H17 SING N N 53 2MK C42 H18 SING N N 54 2MK C43 H19 SING N N 55 2MK C45 H20 SING N N 56 2MK C45 H21 SING N N 57 2MK C45 H22 SING N N 58 2MK C44 H23 SING N N 59 2MK C44 H24 SING N N 60 2MK C44 H25 SING N N 61 2MK N23 H26 SING N N 62 2MK C25 H27 SING N N 63 2MK C37 H28 SING N N 64 2MK C37 H29 SING N N 65 2MK C38 H30 SING N N 66 2MK C40 H31 SING N N 67 2MK C40 H32 SING N N 68 2MK C40 H33 SING N N 69 2MK C39 H34 SING N N 70 2MK C39 H35 SING N N 71 2MK C39 H36 SING N N 72 2MK N26 H37 SING N N 73 2MK C29 H38 SING N N 74 2MK C29 H39 SING N N 75 2MK C31 H40 SING N N 76 2MK C32 H41 SING N N 77 2MK C33 H42 SING N N 78 2MK C34 H43 SING N N 79 2MK C35 H44 SING N N 80 2MK O1 H45 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2MK SMILES ACDLabs 12.01 "O=C(NC(CC(C)C)C(O)CO)C(NC(=O)C(NC(=O)OCc1ccccc1)CC(C)C)CC(C)C" 2MK InChI InChI 1.03 "InChI=1S/C27H45N3O6/c1-17(2)12-21(24(32)15-31)28-25(33)22(13-18(3)4)29-26(34)23(14-19(5)6)30-27(35)36-16-20-10-8-7-9-11-20/h7-11,17-19,21-24,31-32H,12-16H2,1-6H3,(H,28,33)(H,29,34)(H,30,35)/t21-,22-,23-,24-/m0/s1" 2MK InChIKey InChI 1.03 DMNAPEOZULMGEQ-ZJZGAYNASA-N 2MK SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1)[C@@H](O)CO" 2MK SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](CC(C)C)NC(=O)[CH](CC(C)C)NC(=O)OCc1ccccc1)[CH](O)CO" 2MK SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)C[C@@H]([C@H](CO)O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](CC(C)C)NC(=O)OCc1ccccc1" 2MK SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)CC(C(CO)O)NC(=O)C(CC(C)C)NC(=O)C(CC(C)C)NC(=O)OCc1ccccc1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2MK "SYSTEMATIC NAME" ACDLabs 12.01 "N-[(benzyloxy)carbonyl]-L-leucyl-N-[(2R,3S)-1,2-dihydroxy-5-methylhexan-3-yl]-L-leucinamide" 2MK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(phenylmethyl) N-[(2S)-4-methyl-1-[[(2S)-4-methyl-1-[[(2R,3S)-5-methyl-1,2-bis(oxidanyl)hexan-3-yl]amino]-1-oxidanylidene-pentan-2-yl]amino]-1-oxidanylidene-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2MK "Create component" 2013-12-04 RCSB 2MK "Initial release" 2014-02-12 RCSB 2MK "Modify synonyms" 2020-06-05 PDBE 2MK "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2MK _pdbx_chem_comp_synonyms.name "PHQ-Leu-Leu-Leu-ketoaldehyde, bound form" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 2MK THR None "Covalent chemical modification" "Amino-acid backbone" N-terminal C9 N ? ? 2 2MK THR None "Covalent chemical modification" "Amino-acid side chain" "Any position" C1 OG1 ? ? #