data_2MU # _chem_comp.id 2MU _chem_comp.name "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C11 H17 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-08-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.234 _chem_comp.one_letter_code U _chem_comp.three_letter_code 2MU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1FIR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2MU N1 N1 N 0 1 N N N -17.758 54.422 19.313 -0.089 -0.362 -2.107 N1 2MU 1 2MU C2 C2 C 0 1 N N N -16.446 54.101 19.165 -0.777 0.789 -2.002 C2 2MU 2 2MU N3 N3 N 0 1 N N N -16.131 53.512 17.972 -1.628 1.177 -2.969 N3 2MU 3 2MU C4 C4 C 0 1 N N N -16.995 53.193 16.956 -1.813 0.408 -4.061 C4 2MU 4 2MU C5 C5 C 0 1 N N N -18.375 53.479 17.216 -1.100 -0.808 -4.182 C5 2MU 5 2MU C5M C5M C 0 1 N N N -19.398 53.098 16.195 -1.288 -1.687 -5.392 C5M 2MU 6 2MU C6 C6 C 0 1 N N N -18.688 54.075 18.368 -0.248 -1.171 -3.199 C6 2MU 7 2MU O2 O2 O 0 1 N N N -15.622 54.313 20.034 -0.620 1.493 -1.023 O2 2MU 8 2MU O4 O4 O 0 1 N N N -16.567 52.717 15.921 -2.587 0.756 -4.935 O4 2MU 9 2MU "C1'" C1* C 0 1 N N R -18.116 55.208 20.497 0.833 -0.756 -1.040 "C1'" 2MU 10 2MU "C2'" C2* C 0 1 N N R -17.881 56.691 20.189 1.884 0.353 -0.784 "C2'" 2MU 11 2MU "O2'" O2* O 0 1 N N N -17.512 57.446 21.321 3.000 0.213 -1.665 "O2'" 2MU 12 2MU "C3'" C3* C 0 1 N N R -19.242 57.095 19.663 2.299 0.076 0.681 "C3'" 2MU 13 2MU "C4'" C4* C 0 1 N N R -20.180 56.313 20.562 1.128 -0.743 1.256 "C4'" 2MU 14 2MU "O3'" O3* O 0 1 N N N -19.419 58.478 19.821 3.510 -0.680 0.723 "O3'" 2MU 15 2MU "O4'" O4* O 0 1 N N N -19.504 55.048 20.747 0.138 -0.860 0.220 "O4'" 2MU 16 2MU "C5'" C5* C 0 1 N N N -21.556 56.056 20.003 0.534 -0.022 2.468 "C5'" 2MU 17 2MU "O5'" O5* O 0 1 N N N -21.465 55.436 18.726 -0.550 -0.788 2.995 "O5'" 2MU 18 2MU "C6'" C6* C 0 1 N N N -16.359 56.736 21.756 3.559 1.517 -1.834 "C6'" 2MU 19 2MU P P P 0 1 N N N -22.787 54.959 17.973 -1.123 0.024 4.260 P 2MU 20 2MU OP1 O1P O 0 1 N N N -22.439 54.402 16.630 -1.588 1.358 3.820 OP1 2MU 21 2MU OP2 O2P O 0 1 N N N -23.798 56.047 18.085 -2.355 -0.786 4.906 OP2 2MU 22 2MU OP3 O3P O 0 1 N Y N -23.294 53.721 18.843 0.040 0.197 5.359 OP3 2MU 23 2MU HN3 HN3 H 0 1 N N N -15.147 53.286 17.824 -2.113 2.012 -2.879 HN3 2MU 24 2MU HM51 1HM5 H 0 0 N N N -20.471 53.320 16.397 -2.010 -1.226 -6.067 HM51 2MU 25 2MU HM52 2HM5 H 0 0 N N N -19.115 53.551 15.216 -0.335 -1.807 -5.906 HM52 2MU 26 2MU HM53 3HM5 H 0 0 N N N -19.292 52.011 15.969 -1.657 -2.664 -5.078 HM53 2MU 27 2MU H6 H6 H 0 1 N N N -19.755 54.288 18.545 0.304 -2.096 -3.274 H6 2MU 28 2MU "H1'" H1* H 0 1 N N N -17.507 54.874 21.369 1.323 -1.698 -1.287 "H1'" 2MU 29 2MU "H2'" H2* H 0 1 N N N -17.034 56.868 19.485 1.436 1.342 -0.880 "H2'" 2MU 30 2MU "H3'" H3* H 0 1 N N N -19.400 56.886 18.579 2.416 1.011 1.228 "H3'" 2MU 31 2MU "H4'" H4* H 0 1 N N N -20.372 56.900 21.489 1.476 -1.733 1.549 "H4'" 2MU 32 2MU "HO3'" *HO3 H 0 0 N Y N -20.273 58.731 19.490 3.719 -0.822 1.656 "HO3'" 2MU 33 2MU "H5'" 1H5* H 0 1 N N N -22.186 55.464 20.707 1.302 0.094 3.233 "H5'" 2MU 34 2MU "H5''" 2H5* H 0 0 N N N -22.171 56.985 19.970 0.171 0.960 2.165 "H5''" 2MU 35 2MU "H6'1" 1H6* H 0 0 N N N -16.067 57.333 22.651 4.418 1.460 -2.503 "H6'1" 2MU 36 2MU "H6'2" 2H6* H 0 0 N N N -16.506 55.645 21.934 2.809 2.181 -2.263 "H6'2" 2MU 37 2MU "H6'3" 3H6* H 0 0 N N N -15.561 56.601 20.988 3.877 1.904 -0.866 "H6'3" 2MU 38 2MU HOP2 2HOP H 0 0 N N N -24.585 55.762 17.636 -2.668 -0.266 5.659 HOP2 2MU 39 2MU HOP3 3HOP H 0 0 N N N -24.081 53.436 18.394 0.313 -0.692 5.619 HOP3 2MU 40 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2MU N1 C2 SING N N 1 2MU N1 C6 SING N N 2 2MU N1 "C1'" SING N N 3 2MU C2 N3 SING N N 4 2MU C2 O2 DOUB N N 5 2MU N3 C4 SING N N 6 2MU N3 HN3 SING N N 7 2MU C4 C5 SING N N 8 2MU C4 O4 DOUB N N 9 2MU C5 C5M SING N N 10 2MU C5 C6 DOUB N N 11 2MU C5M HM51 SING N N 12 2MU C5M HM52 SING N N 13 2MU C5M HM53 SING N N 14 2MU C6 H6 SING N N 15 2MU "C1'" "C2'" SING N N 16 2MU "C1'" "O4'" SING N N 17 2MU "C1'" "H1'" SING N N 18 2MU "C2'" "O2'" SING N N 19 2MU "C2'" "C3'" SING N N 20 2MU "C2'" "H2'" SING N N 21 2MU "O2'" "C6'" SING N N 22 2MU "C3'" "C4'" SING N N 23 2MU "C3'" "O3'" SING N N 24 2MU "C3'" "H3'" SING N N 25 2MU "C4'" "O4'" SING N N 26 2MU "C4'" "C5'" SING N N 27 2MU "C4'" "H4'" SING N N 28 2MU "O3'" "HO3'" SING N N 29 2MU "C5'" "O5'" SING N N 30 2MU "C5'" "H5'" SING N N 31 2MU "C5'" "H5''" SING N N 32 2MU "O5'" P SING N N 33 2MU "C6'" "H6'1" SING N N 34 2MU "C6'" "H6'2" SING N N 35 2MU "C6'" "H6'3" SING N N 36 2MU P OP1 DOUB N N 37 2MU P OP2 SING N N 38 2MU P OP3 SING N N 39 2MU OP2 HOP2 SING N N 40 2MU OP3 HOP3 SING N N 41 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2MU SMILES ACDLabs 10.04 "O=C1NC(=O)N(C=C1C)C2OC(C(O)C2OC)COP(=O)(O)O" 2MU SMILES_CANONICAL CACTVS 3.341 "CO[C@@H]1[C@H](O)[C@@H](CO[P](O)(O)=O)O[C@H]1N2C=C(C)C(=O)NC2=O" 2MU SMILES CACTVS 3.341 "CO[CH]1[CH](O)[CH](CO[P](O)(O)=O)O[CH]1N2C=C(C)C(=O)NC2=O" 2MU SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)OC" 2MU SMILES "OpenEye OEToolkits" 1.5.0 "CC1=CN(C(=O)NC1=O)C2C(C(C(O2)COP(=O)(O)O)O)OC" 2MU InChI InChI 1.03 "InChI=1S/C11H17N2O9P/c1-5-3-13(11(16)12-9(5)15)10-8(20-2)7(14)6(22-10)4-21-23(17,18)19/h3,6-8,10,14H,4H2,1-2H3,(H,12,15,16)(H2,17,18,19)/t6-,7-,8-,10-/m1/s1" 2MU InChIKey InChI 1.03 AMKCISYJIZUJJQ-FDDDBJFASA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2MU "SYSTEMATIC NAME" ACDLabs 10.04 ;5-methyl-2'-O-methyluridine 5'-(dihydrogen phosphate) ; 2MU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3R,4R,5R)-3-hydroxy-4-methoxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2MU "Create component" 2000-08-09 RCSB 2MU "Modify descriptor" 2011-06-04 RCSB #