data_2ND # _chem_comp.id 2ND _chem_comp.name "2'-DEOXYINOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H12 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2005-03-15 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 252.227 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2ND _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1Z39 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2ND O6 O6 O 0 1 N N N -18.325 -43.293 -12.156 -4.643 1.213 -0.733 O6 2ND 1 2ND C6 C6 C 0 1 N N N -17.962 -42.535 -11.258 -3.852 0.429 -0.236 C6 2ND 2 2ND N1 N1 N 0 1 N N N -18.278 -41.171 -11.310 -4.283 -0.697 0.375 N1 2ND 3 2ND C2 C2 C 0 1 N N N -17.840 -40.327 -10.282 -3.394 -1.563 0.925 C2 2ND 4 2ND N3 N3 N 0 1 N N N -17.138 -40.818 -9.275 -2.108 -1.353 0.889 N3 2ND 5 2ND C4 C4 C 0 1 Y N N -16.822 -42.120 -9.192 -1.597 -0.264 0.296 C4 2ND 6 2ND C5 C5 C 0 1 Y N N -17.224 -43.011 -10.180 -2.457 0.673 -0.284 C5 2ND 7 2ND N7 N7 N 0 1 Y N N -16.786 -44.216 -9.830 -1.688 1.662 -0.796 N7 2ND 8 2ND C8 C8 C 0 1 Y N N -16.140 -44.095 -8.674 -0.435 1.396 -0.564 C8 2ND 9 2ND N9 N9 N 0 1 Y N N -16.158 -42.825 -8.278 -0.330 0.217 0.112 N9 2ND 10 2ND "C1'" C1* C 0 1 N N R -15.576 -42.327 -7.008 0.912 -0.421 0.554 "C1'" 2ND 11 2ND "O4'" O4* O 0 1 N N N -16.297 -42.857 -5.881 1.949 0.566 0.683 "O4'" 2ND 12 2ND "C2'" C2* C 0 1 N N N -15.608 -40.799 -6.884 1.383 -1.444 -0.498 "C2'" 2ND 13 2ND "C3'" C3* C 0 1 N N S -16.044 -40.603 -5.432 2.800 -0.960 -0.895 "C3'" 2ND 14 2ND "O3'" O3* O 0 1 N N N -14.924 -40.713 -4.550 3.696 -2.065 -1.036 "O3'" 2ND 15 2ND "C4'" C4* C 0 1 N N R -17.009 -41.775 -5.256 3.190 -0.076 0.317 "C4'" 2ND 16 2ND "C5'" C5* C 0 1 N N N -18.348 -41.562 -5.967 4.235 0.965 -0.090 "C5'" 2ND 17 2ND "O5'" O5* O 0 1 N N N -19.093 -42.782 -5.940 4.625 1.722 1.058 "O5'" 2ND 18 2ND HN1 HN1 H 0 1 N N N -18.821 -40.796 -12.088 -5.233 -0.888 0.422 HN1 2ND 19 2ND H2 H2 H 0 1 N N N -18.054 -39.245 -10.265 -3.764 -2.455 1.408 H2 2ND 20 2ND H8 H8 H 0 1 N N N -15.661 -44.924 -8.126 0.397 2.017 -0.863 H8 2ND 21 2ND "H1'" H1* H 0 1 N N N -14.514 -42.667 -7.017 0.753 -0.918 1.510 "H1'" 2ND 22 2ND "H2'1" 1H2* H 0 0 N N N -16.240 -40.278 -7.640 1.431 -2.443 -0.063 "H2'1" 2ND 23 2ND "H2'2" 2H2* H 0 0 N N N -14.660 -40.283 -7.165 0.719 -1.436 -1.362 "H2'2" 2ND 24 2ND "H3'" H3* H 0 1 N N N -16.492 -39.607 -5.209 2.767 -0.369 -1.810 "H3'" 2ND 25 2ND H1 H1 H 0 1 N N N -15.195 -40.591 -3.648 3.344 -2.620 -1.745 H1 2ND 26 2ND "H4'" H4* H 0 1 N N N -17.275 -41.937 -4.185 3.561 -0.690 1.137 "H4'" 2ND 27 2ND "H5'1" 1H5* H 0 0 N N N -18.220 -41.167 -7.002 3.811 1.633 -0.839 "H5'1" 2ND 28 2ND "H5'2" 2H5* H 0 0 N N N -18.922 -40.706 -5.542 5.108 0.460 -0.505 "H5'2" 2ND 29 2ND "H5'" H5* H 0 1 N N N -19.924 -42.650 -6.381 5.283 2.365 0.759 "H5'" 2ND 30 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2ND O6 C6 DOUB N N 1 2ND C6 N1 SING N N 2 2ND C6 C5 SING N N 3 2ND N1 C2 SING N N 4 2ND N1 HN1 SING N N 5 2ND C2 N3 DOUB N N 6 2ND C2 H2 SING N N 7 2ND N3 C4 SING N N 8 2ND C4 C5 DOUB Y N 9 2ND C4 N9 SING Y N 10 2ND C5 N7 SING Y N 11 2ND N7 C8 DOUB Y N 12 2ND C8 N9 SING Y N 13 2ND C8 H8 SING N N 14 2ND N9 "C1'" SING N N 15 2ND "C1'" "O4'" SING N N 16 2ND "C1'" "C2'" SING N N 17 2ND "C1'" "H1'" SING N N 18 2ND "O4'" "C4'" SING N N 19 2ND "C2'" "C3'" SING N N 20 2ND "C2'" "H2'1" SING N N 21 2ND "C2'" "H2'2" SING N N 22 2ND "C3'" "O3'" SING N N 23 2ND "C3'" "C4'" SING N N 24 2ND "C3'" "H3'" SING N N 25 2ND "O3'" H1 SING N N 26 2ND "C4'" "C5'" SING N N 27 2ND "C4'" "H4'" SING N N 28 2ND "C5'" "O5'" SING N N 29 2ND "C5'" "H5'1" SING N N 30 2ND "C5'" "H5'2" SING N N 31 2ND "O5'" "H5'" SING N N 32 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2ND SMILES ACDLabs 10.04 "O=C1c2ncn(c2N=CN1)C3OC(C(O)C3)CO" 2ND SMILES_CANONICAL CACTVS 3.341 "OC[C@H]1O[C@H](C[C@@H]1O)n2cnc3C(=O)NC=Nc23" 2ND SMILES CACTVS 3.341 "OC[CH]1O[CH](C[CH]1O)n2cnc3C(=O)NC=Nc23" 2ND SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)CO)O)N=CNC2=O" 2ND SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)CO)O)N=CNC2=O" 2ND InChI InChI 1.03 "InChI=1S/C10H12N4O4/c15-2-6-5(16)1-7(18-6)14-4-13-8-9(14)11-3-12-10(8)17/h3-7,15-16H,1-2H2,(H,11,12,17)/t5-,6+,7+/m0/s1" 2ND InChIKey InChI 1.03 VGONTNSXDCQUGY-RRKCRQDMSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2ND "SYSTEMATIC NAME" ACDLabs 10.04 "2'-deoxyinosine" 2ND "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "9-[(2R,4S,5R)-4-hydroxy-5-(hydroxymethyl)oxolan-2-yl]-1H-purin-6-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2ND "Create component" 2005-03-15 RCSB 2ND "Modify descriptor" 2011-06-04 RCSB #