data_2NE # _chem_comp.id 2NE _chem_comp.name "Salicylyl CoA" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C28 H40 N7 O18 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-20 _chem_comp.pdbx_modified_date 2013-05-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 887.640 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2NE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4I4Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2NE C01 C01 C 0 1 N N N 45.268 -48.145 15.587 1.340 4.510 -2.355 C01 2NE 1 2NE C02 C02 C 0 1 N N N 43.882 -48.050 14.934 0.916 5.769 -1.595 C02 2NE 2 2NE C03 C03 C 0 1 N N N 43.903 -46.992 13.845 -0.226 6.457 -2.346 C03 2NE 3 2NE C04 C04 C 0 1 N N N 42.890 -47.636 16.012 0.444 5.383 -0.192 C04 2NE 4 2NE O05 O05 O 0 1 N N N 42.754 -48.655 16.957 -0.667 4.490 -0.292 O05 2NE 5 2NE P06 P06 P 0 1 N N N 41.385 -48.733 17.772 -1.419 3.878 0.994 P06 2NE 6 2NE O07 O07 O 0 1 N N N 41.475 -49.892 18.766 -0.407 2.923 1.804 O07 2NE 7 2NE O08 O08 O 0 1 N N N 41.097 -47.435 18.444 -1.867 4.981 1.874 O08 2NE 8 2NE O09 O09 O 0 1 N N N 40.181 -48.920 16.740 -2.695 3.023 0.513 O09 2NE 9 2NE P10 P10 P 0 1 N N N 39.693 -50.306 16.147 -4.042 2.520 1.237 P10 2NE 10 2NE O11 O11 O 0 1 N N N 38.745 -50.963 17.096 -5.104 3.729 1.295 O11 2NE 11 2NE O12 O12 O 0 1 N N N 40.865 -51.221 15.883 -3.726 2.076 2.613 O12 2NE 12 2NE O13 O13 O 0 1 N N N 38.964 -49.971 14.788 -4.671 1.292 0.408 O13 2NE 13 2NE C14 C14 C 0 1 N N N 37.717 -49.370 14.780 -5.814 0.557 0.852 C14 2NE 14 2NE C15 C15 C 0 1 N N R 36.998 -49.761 13.565 -6.144 -0.535 -0.167 C15 2NE 15 2NE O16 O16 O 0 1 N N N 37.521 -49.030 12.364 -5.095 -1.517 -0.188 O16 2NE 16 2NE C17 C17 C 0 1 N N R 38.145 -50.147 11.555 -5.717 -2.794 -0.448 C17 2NE 17 2NE C18 C18 C 0 1 N N R 38.304 -51.252 12.465 -7.016 -2.741 0.395 C18 2NE 18 2NE O19 O19 O 0 1 N N N 38.353 -52.517 11.769 -8.011 -3.614 -0.145 O19 2NE 19 2NE C20 C20 C 0 1 N N S 37.166 -51.181 13.297 -7.443 -1.257 0.242 C20 2NE 20 2NE O21 O21 O 0 1 N N N 36.038 -51.713 12.560 -8.436 -1.125 -0.777 O21 2NE 21 2NE P22 P22 P 0 1 N N N 34.899 -52.529 13.291 -9.896 -0.505 -0.504 P22 2NE 22 2NE O23 O23 O 0 1 N N N 33.941 -53.058 12.254 -10.548 -1.247 0.599 O23 2NE 23 2NE O24 O24 O 0 1 N N N 35.522 -53.691 14.045 -9.754 1.046 -0.097 O24 2NE 24 2NE O25 O25 O 0 1 N N N 34.190 -51.588 14.263 -10.791 -0.631 -1.837 O25 2NE 25 2NE N26 N26 N 0 1 Y N N 39.353 -49.765 10.986 -4.854 -3.889 0.002 N26 2NE 26 2NE C27 C27 C 0 1 Y N N 40.331 -49.010 11.532 -3.883 -3.812 0.956 C27 2NE 27 2NE N28 N28 N 0 1 Y N N 41.342 -48.876 10.651 -3.313 -4.972 1.105 N28 2NE 28 2NE C29 C29 C 0 1 Y N N 41.010 -49.550 9.522 -3.881 -5.866 0.260 C29 2NE 29 2NE C30 C30 C 0 1 Y N N 41.633 -49.768 8.294 -3.686 -7.230 -0.012 C30 2NE 30 2NE N31 N31 N 0 1 N N N 42.945 -49.212 7.999 -2.717 -7.955 0.660 N31 2NE 31 2NE N32 N32 N 0 1 Y N N 41.024 -50.516 7.349 -4.453 -7.809 -0.930 N32 2NE 32 2NE C33 C33 C 0 1 Y N N 39.812 -51.042 7.594 -5.380 -7.126 -1.576 C33 2NE 33 2NE N34 N34 N 0 1 Y N N 39.188 -50.849 8.754 -5.598 -5.846 -1.354 N34 2NE 34 2NE C35 C35 C 0 1 Y N N 39.759 -50.111 9.738 -4.880 -5.183 -0.454 C35 2NE 35 2NE C36 C36 C 0 1 N N R 43.476 -49.430 14.399 2.105 6.726 -1.488 C36 2NE 36 2NE O37 O37 O 0 1 N N N 42.205 -49.375 13.885 1.677 7.954 -0.898 O37 2NE 37 2NE C38 C38 C 0 1 N N N 44.406 -49.948 13.339 3.176 6.102 -0.629 C38 2NE 38 2NE O39 O39 O 0 1 N N N 45.540 -50.396 13.587 3.432 6.575 0.458 O39 2NE 39 2NE N40 N40 N 0 1 N N N 43.985 -49.933 11.927 3.848 5.020 -1.069 N40 2NE 40 2NE C41 C41 C 0 1 N N N 44.943 -50.461 10.986 4.819 4.356 -0.197 C41 2NE 41 2NE C42 C42 C 0 1 N N N 45.578 -49.364 10.231 5.435 3.165 -0.933 C42 2NE 42 2NE C43 C43 C 0 1 N N N 46.551 -50.018 9.281 6.435 2.482 -0.035 C43 2NE 43 2NE O44 O44 O 0 1 N N N 47.155 -51.045 9.634 6.634 2.906 1.083 O44 2NE 44 2NE N45 N45 N 0 1 N N N 46.778 -49.472 7.941 7.107 1.400 -0.476 N45 2NE 45 2NE C46 C46 C 0 1 N N N 47.721 -50.167 7.098 8.078 0.735 0.397 C46 2NE 46 2NE C47 C47 C 0 1 N N N 47.115 -50.413 5.762 8.694 -0.456 -0.339 C47 2NE 47 2NE S48 S48 S 0 1 N N N 48.397 -50.027 4.604 9.895 -1.276 0.739 S48 2NE 48 2NE C49 C49 C 0 1 N N N 48.145 -48.369 4.018 10.432 -2.569 -0.330 C49 2NE 49 2NE O50 O50 O 0 1 N N N 47.798 -47.482 4.806 9.965 -2.668 -1.449 O50 2NE 50 2NE C51 C51 C 0 1 Y N N 48.521 -48.018 2.585 11.449 -3.534 0.132 C51 2NE 51 2NE C52 C52 C 0 1 Y N N 49.854 -47.708 2.277 11.879 -4.564 -0.715 C52 2NE 52 2NE O53 O53 O 0 1 N N N 50.802 -47.722 3.281 11.363 -4.680 -1.964 O53 2NE 53 2NE C54 C54 C 0 1 Y N N 50.202 -47.399 0.963 12.835 -5.465 -0.270 C54 2NE 54 2NE C55 C55 C 0 1 Y N N 49.225 -47.393 -0.051 13.359 -5.346 1.002 C55 2NE 55 2NE C56 C56 C 0 1 Y N N 47.901 -47.699 0.259 12.937 -4.329 1.842 C56 2NE 56 2NE C57 C57 C 0 1 Y N N 47.552 -48.016 1.574 11.992 -3.422 1.414 C57 2NE 57 2NE H1 H1 H 0 1 N N N 45.251 -48.912 16.375 0.468 3.881 -2.531 H1 2NE 58 2NE H2 H2 H 0 1 N N N 46.014 -48.419 14.826 1.782 4.794 -3.310 H2 2NE 59 2NE H3 H3 H 0 1 N N N 45.533 -47.172 16.027 2.073 3.960 -1.765 H3 2NE 60 2NE H4 H4 H 0 1 N N N 44.199 -46.025 14.278 -1.094 5.799 -2.369 H4 2NE 61 2NE H5 H5 H 0 1 N N N 44.625 -47.281 13.067 -0.487 7.385 -1.837 H5 2NE 62 2NE H6 H6 H 0 1 N N N 42.901 -46.903 13.401 0.091 6.678 -3.365 H6 2NE 63 2NE H7 H7 H 0 1 N N N 43.253 -46.725 16.510 1.258 4.893 0.343 H7 2NE 64 2NE H8 H8 H 0 1 N N N 41.912 -47.436 15.549 0.142 6.280 0.349 H8 2NE 65 2NE H9 H9 H 0 1 N N N 41.328 -49.567 19.646 -0.073 2.177 1.287 H9 2NE 66 2NE H10 H10 H 0 1 N N N 39.078 -51.820 17.335 -5.358 4.071 0.426 H10 2NE 67 2NE H11 H11 H 0 1 N N N 37.836 -48.277 14.801 -5.599 0.101 1.818 H11 2NE 68 2NE H12 H12 H 0 1 N N N 37.148 -49.693 15.664 -6.664 1.232 0.949 H12 2NE 69 2NE H13 H13 H 0 1 N N N 35.928 -49.533 13.684 -6.261 -0.096 -1.157 H13 2NE 70 2NE H14 H14 H 0 1 N N N 37.436 -50.433 10.764 -5.951 -2.899 -1.507 H14 2NE 71 2NE H15 H15 H 0 1 N N N 39.220 -51.118 13.059 -6.813 -2.983 1.439 H15 2NE 72 2NE H16 H16 H 0 1 N N N 38.458 -53.221 12.398 -7.752 -4.546 -0.154 H16 2NE 73 2NE H17 H17 H 0 1 N N N 37.319 -51.738 14.233 -7.814 -0.867 1.190 H17 2NE 74 2NE H18 H18 H 0 1 N N N 35.178 -54.509 13.706 -9.334 1.593 -0.774 H18 2NE 75 2NE H19 H19 H 0 1 N N N 33.273 -51.517 14.024 -11.686 -0.276 -1.744 H19 2NE 76 2NE H20 H20 H 0 1 N N N 40.307 -48.580 12.522 -3.625 -2.919 1.506 H20 2NE 77 2NE H21 H21 H 0 1 N N N 43.223 -49.483 7.077 -2.163 -7.521 1.328 H21 2NE 78 2NE H22 H22 H 0 1 N N N 42.904 -48.214 8.055 -2.592 -8.896 0.463 H22 2NE 79 2NE H23 H23 H 0 1 N N N 39.332 -51.636 6.831 -5.982 -7.635 -2.314 H23 2NE 80 2NE H24 H24 H 0 1 N N N 43.503 -50.133 15.244 2.506 6.920 -2.483 H24 2NE 81 2NE H25 H25 H 0 1 N N N 41.609 -49.048 14.548 1.309 7.857 -0.009 H25 2NE 82 2NE H26 H26 H 0 1 N N N 43.094 -49.580 11.640 3.688 4.681 -1.964 H26 2NE 83 2NE H27 H27 H 0 1 N N N 44.429 -51.134 10.284 5.604 5.061 0.075 H27 2NE 84 2NE H28 H28 H 0 1 N N N 45.717 -51.021 11.532 4.317 4.005 0.705 H28 2NE 85 2NE H29 H29 H 0 1 N N N 46.110 -48.687 10.916 4.650 2.460 -1.205 H29 2NE 86 2NE H30 H30 H 0 1 N N N 44.820 -48.797 9.671 5.937 3.515 -1.835 H30 2NE 87 2NE H31 H31 H 0 1 N N N 46.300 -48.653 7.624 6.947 1.060 -1.370 H31 2NE 88 2NE H32 H32 H 0 1 N N N 47.986 -51.129 7.562 8.863 1.441 0.669 H32 2NE 89 2NE H33 H33 H 0 1 N N N 48.627 -49.554 6.981 7.576 0.385 1.299 H33 2NE 90 2NE H34 H34 H 0 1 N N N 46.243 -49.761 5.606 7.909 -1.161 -0.611 H34 2NE 91 2NE H35 H35 H 0 1 N N N 46.808 -51.465 5.664 9.196 -0.105 -1.241 H35 2NE 92 2NE H36 H36 H 0 1 N N N 50.388 -47.952 4.105 11.853 -4.189 -2.639 H36 2NE 93 2NE H37 H37 H 0 1 N N N 51.228 -47.163 0.721 13.170 -6.260 -0.920 H37 2NE 94 2NE H38 H38 H 0 1 N N N 49.501 -47.152 -1.067 14.100 -6.053 1.345 H38 2NE 95 2NE H39 H39 H 0 1 N N N 47.148 -47.691 -0.515 13.353 -4.245 2.835 H39 2NE 96 2NE H40 H40 H 0 1 N N N 46.528 -48.261 1.813 11.665 -2.630 2.072 H40 2NE 97 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2NE C55 C56 DOUB Y N 1 2NE C55 C54 SING Y N 2 2NE C56 C57 SING Y N 3 2NE C54 C52 DOUB Y N 4 2NE C57 C51 DOUB Y N 5 2NE C52 C51 SING Y N 6 2NE C52 O53 SING N N 7 2NE C51 C49 SING N N 8 2NE C49 S48 SING N N 9 2NE C49 O50 DOUB N N 10 2NE S48 C47 SING N N 11 2NE C47 C46 SING N N 12 2NE C46 N45 SING N N 13 2NE N32 C33 DOUB Y N 14 2NE N32 C30 SING Y N 15 2NE C33 N34 SING Y N 16 2NE N45 C43 SING N N 17 2NE N31 C30 SING N N 18 2NE C30 C29 DOUB Y N 19 2NE N34 C35 DOUB Y N 20 2NE C43 O44 DOUB N N 21 2NE C43 C42 SING N N 22 2NE C29 C35 SING Y N 23 2NE C29 N28 SING Y N 24 2NE C35 N26 SING Y N 25 2NE C42 C41 SING N N 26 2NE N28 C27 DOUB Y N 27 2NE C41 N40 SING N N 28 2NE N26 C27 SING Y N 29 2NE N26 C17 SING N N 30 2NE C17 O16 SING N N 31 2NE C17 C18 SING N N 32 2NE O19 C18 SING N N 33 2NE N40 C38 SING N N 34 2NE O23 P22 DOUB N N 35 2NE O16 C15 SING N N 36 2NE C18 C20 SING N N 37 2NE O21 P22 SING N N 38 2NE O21 C20 SING N N 39 2NE P22 O24 SING N N 40 2NE P22 O25 SING N N 41 2NE C20 C15 SING N N 42 2NE C38 O39 DOUB N N 43 2NE C38 C36 SING N N 44 2NE C15 C14 SING N N 45 2NE C03 C02 SING N N 46 2NE O37 C36 SING N N 47 2NE C36 C02 SING N N 48 2NE C14 O13 SING N N 49 2NE O13 P10 SING N N 50 2NE C02 C01 SING N N 51 2NE C02 C04 SING N N 52 2NE O12 P10 DOUB N N 53 2NE C04 O05 SING N N 54 2NE P10 O09 SING N N 55 2NE P10 O11 SING N N 56 2NE O09 P06 SING N N 57 2NE O05 P06 SING N N 58 2NE P06 O08 DOUB N N 59 2NE P06 O07 SING N N 60 2NE C01 H1 SING N N 61 2NE C01 H2 SING N N 62 2NE C01 H3 SING N N 63 2NE C03 H4 SING N N 64 2NE C03 H5 SING N N 65 2NE C03 H6 SING N N 66 2NE C04 H7 SING N N 67 2NE C04 H8 SING N N 68 2NE O07 H9 SING N N 69 2NE O11 H10 SING N N 70 2NE C14 H11 SING N N 71 2NE C14 H12 SING N N 72 2NE C15 H13 SING N N 73 2NE C17 H14 SING N N 74 2NE C18 H15 SING N N 75 2NE O19 H16 SING N N 76 2NE C20 H17 SING N N 77 2NE O24 H18 SING N N 78 2NE O25 H19 SING N N 79 2NE C27 H20 SING N N 80 2NE N31 H21 SING N N 81 2NE N31 H22 SING N N 82 2NE C33 H23 SING N N 83 2NE C36 H24 SING N N 84 2NE O37 H25 SING N N 85 2NE N40 H26 SING N N 86 2NE C41 H27 SING N N 87 2NE C41 H28 SING N N 88 2NE C42 H29 SING N N 89 2NE C42 H30 SING N N 90 2NE N45 H31 SING N N 91 2NE C46 H32 SING N N 92 2NE C46 H33 SING N N 93 2NE C47 H34 SING N N 94 2NE C47 H35 SING N N 95 2NE O53 H36 SING N N 96 2NE C54 H37 SING N N 97 2NE C55 H38 SING N N 98 2NE C56 H39 SING N N 99 2NE C57 H40 SING N N 100 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2NE SMILES ACDLabs 12.01 "O=C(SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O)c4ccccc4O" 2NE InChI InChI 1.03 ;InChI=1S/C28H40N7O18P3S/c1-28(2,22(39)25(40)31-8-7-18(37)30-9-10-57-27(41)15-5-3-4-6-16(15)36)12-50-56(47,48)53-55(45,46)49-11-17-21(52-54(42,43)44)20(38)26(51-17)35-14-34-19-23(29)32-13-33-24(19)35/h3-6,13-14,17,20-22,26,36,38-39H,7-12H2,1-2H3,(H,30,37)(H,31,40)(H,45,46)(H,47,48)(H2,29,32,33)(H2,42,43,44)/t17-,20-,21-,22+,26-/m1/s1 ; 2NE InChIKey InChI 1.03 YTKKDFTVSNSVEE-TYHXJLICSA-N 2NE SMILES_CANONICAL CACTVS 3.370 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O" 2NE SMILES CACTVS 3.370 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O" 2NE SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)OP(=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O)O" 2NE SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)c4ccccc4O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2NE "SYSTEMATIC NAME" ACDLabs 12.01 ;S-{(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} 2-hydroxybenzenecarbothioate (non-preferred name) ; 2NE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "S-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-oxidanyl-3-phosphonooxy-oxolan-2-yl]methoxy-oxidanyl-phosphoryl]oxy-oxidanyl-phosphoryl]oxy-3,3-dimethyl-2-oxidanyl-butanoyl]amino]propanoylamino]ethyl] 2-oxidanylbenzenecarbothioate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2NE "Create component" 2012-12-20 PDBJ 2NE "Initial release" 2013-05-08 RCSB #