data_2P3 # _chem_comp.id 2P3 _chem_comp.name "5-[(2S)-2,3-dihydro-1,4-benzodioxin-2-yl]-2,4-dihydro-3H-1,2,4-triazole-3-thione" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H9 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-12-23 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 235.262 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2P3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4NI0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2P3 C2 C2 C 0 1 N N N N N N 47.997 16.555 26.534 -3.490 0.152 -0.022 C2 2P3 1 2P3 N3 N3 N 0 1 N N N N N N 49.214 17.149 26.394 -2.316 0.438 0.576 N3 2P3 2 2P3 S1 S1 S 0 1 N N N N N N 47.995 14.752 26.400 -4.981 0.953 0.235 S1 2P3 3 2P3 C4 C4 C 0 1 N N N N N N 48.854 18.443 26.558 -1.364 -0.427 0.095 C4 2P3 4 2P3 N5 N5 N 0 1 N N N N N N 47.634 18.697 26.762 -1.916 -1.220 -0.765 N5 2P3 5 2P3 N6 N6 N 0 1 N N N N N N 47.071 17.405 26.745 -3.272 -0.880 -0.865 N6 2P3 6 2P3 C7 C7 C 0 1 N N S N N N 49.910 19.536 26.500 0.087 -0.449 0.502 C7 2P3 7 2P3 C8 C8 C 0 1 N N N N N N 51.017 19.101 25.716 0.737 -1.757 0.033 C8 2P3 8 2P3 O9 O9 O 0 1 N N N N N N 51.618 20.150 24.840 2.114 -1.740 0.424 O9 2P3 9 2P3 C10 C10 C 0 1 Y N N N N N 51.743 21.548 25.296 2.806 -0.594 0.177 C10 2P3 10 2P3 C11 C11 C 0 1 Y N N N N N 50.639 22.119 25.965 2.138 0.596 -0.091 C11 2P3 11 2P3 O12 O12 O 0 1 N N N N N N 49.535 21.202 26.085 0.778 0.642 -0.115 O12 2P3 12 2P3 C13 C13 C 0 1 Y N N N N N 50.669 23.495 26.438 2.863 1.753 -0.336 C13 2P3 13 2P3 C14 C14 C 0 1 Y N N N N N 51.862 24.284 26.224 4.245 1.722 -0.318 C14 2P3 14 2P3 C15 C15 C 0 1 Y N N N N N 53.010 23.682 25.534 4.908 0.538 -0.054 C15 2P3 15 2P3 C16 C16 C 0 1 Y N N N N N 52.942 22.301 25.065 4.192 -0.618 0.193 C16 2P3 16 2P3 H1 H1 H 0 1 N N N N N N 50.113 16.746 26.220 -2.169 1.136 1.232 H1 2P3 17 2P3 H2 H2 H 0 1 N N N N N N 46.103 17.190 26.877 -3.932 -1.306 -1.434 H2 2P3 18 2P3 H3 H3 H 0 1 N N N N N N 50.286 19.620 27.530 0.165 -0.367 1.587 H3 2P3 19 2P3 H4 H4 H 0 1 N N N N N N 50.678 18.274 25.075 0.234 -2.605 0.498 H4 2P3 20 2P3 H5 H5 H 0 1 N N N N N N 51.798 18.738 26.400 0.663 -1.836 -1.051 H5 2P3 21 2P3 H6 H6 H 0 1 N N N N N N 49.813 23.920 26.941 2.347 2.679 -0.543 H6 2P3 22 2P3 H7 H7 H 0 1 N N N N N N 51.908 25.307 26.568 4.807 2.623 -0.510 H7 2P3 23 2P3 H8 H8 H 0 1 N N N N N N 53.907 24.262 25.373 5.988 0.516 -0.041 H8 2P3 24 2P3 H9 H9 H 0 1 N N N N N N 53.781 21.854 24.552 4.713 -1.542 0.399 H9 2P3 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2P3 O9 C10 SING N N 1 2P3 O9 C8 SING N N 2 2P3 C16 C10 DOUB Y N 3 2P3 C16 C15 SING Y N 4 2P3 C10 C11 SING Y N 5 2P3 C15 C14 DOUB Y N 6 2P3 C8 C7 SING N N 7 2P3 C11 O12 SING N N 8 2P3 C11 C13 DOUB Y N 9 2P3 O12 C7 SING N N 10 2P3 C14 C13 SING Y N 11 2P3 N3 C2 SING N N 12 2P3 N3 C4 SING N N 13 2P3 S1 C2 DOUB N N 14 2P3 C7 C4 SING N N 15 2P3 C2 N6 SING N N 16 2P3 C4 N5 DOUB N N 17 2P3 N6 N5 SING N N 18 2P3 N3 H1 SING N N 19 2P3 N6 H2 SING N N 20 2P3 C7 H3 SING N N 21 2P3 C8 H4 SING N N 22 2P3 C8 H5 SING N N 23 2P3 C13 H6 SING N N 24 2P3 C14 H7 SING N N 25 2P3 C15 H8 SING N N 26 2P3 C16 H9 SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2P3 SMILES ACDLabs 12.01 "S=C1NN=C(N1)C2Oc3ccccc3OC2" 2P3 InChI InChI 1.03 "InChI=1S/C10H9N3O2S/c16-10-11-9(12-13-10)8-5-14-6-3-1-2-4-7(6)15-8/h1-4,8H,5H2,(H2,11,12,13,16)/t8-/m1/s1" 2P3 InChIKey InChI 1.03 WDUGNJIRKJHDNF-MRVPVSSYSA-N 2P3 SMILES_CANONICAL CACTVS 3.385 "S=C1NN=C(N1)[C@H]2COc3ccccc3O2" 2P3 SMILES CACTVS 3.385 "S=C1NN=C(N1)[CH]2COc3ccccc3O2" 2P3 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)OC[C@@H](O2)C3=NNC(=S)N3" 2P3 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc2c(c1)OCC(O2)C3=NNC(=S)N3" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2P3 "SYSTEMATIC NAME" ACDLabs 12.01 "5-[(2S)-2,3-dihydro-1,4-benzodioxin-2-yl]-2,4-dihydro-3H-1,2,4-triazole-3-thione" 2P3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "3-[(3S)-2,3-dihydro-1,4-benzodioxin-3-yl]-1,4-dihydro-1,2,4-triazole-5-thione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2P3 "Create component" 2013-12-23 RCSB 2P3 "Initial release" 2014-08-20 RCSB 2P3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 2P3 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom S1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #