data_2RG # _chem_comp.id 2RG _chem_comp.name "(2S,3R,4S)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(1S,2R)-1-formyl-2-hydroxypropyl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 N3 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "ERTAPENEM, bound form POST-ISOMERIZED" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-04-07 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 477.531 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2RG _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3M6H _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2RG C C C 0 1 N N N N N N -2.759 -8.339 3.565 -3.465 -0.653 -0.300 C 2RG 1 2RG N N N 0 1 N N N N N N -4.882 -7.591 2.405 -1.552 -0.672 -1.849 N 2RG 2 2RG O O O 0 1 N N N N N N -2.704 -9.351 2.855 -3.824 0.365 -0.853 O 2RG 3 2RG CA CA C 0 1 N N S N N N -3.831 -7.214 3.367 -2.097 -1.220 -0.581 CA 2RG 4 2RG CB CB C 0 1 N N N N N N -4.560 -6.918 4.692 -1.077 -0.738 0.481 CB 2RG 5 2RG CD CD C 0 1 N N N N N N -6.056 -6.833 2.859 -0.084 -0.826 -1.757 CD 2RG 6 2RG CG CG C 0 1 N N S N N N -6.043 -7.082 4.359 0.275 -0.854 -0.260 CG 2RG 7 2RG CAA CAA C 0 1 N N N N N N -11.766 -11.430 5.194 6.739 0.530 -0.852 CAA 2RG 8 2RG CAB CAB C 0 1 N N S N N N -10.443 -11.888 4.598 6.203 1.241 0.364 CAB 2RG 9 2RG OAC OAC O 0 1 N N N N N N -12.557 -10.591 4.361 7.282 1.158 -1.728 OAC 2RG 10 2RG CAD CAD C 0 1 N N S N N N -9.365 -10.808 4.848 4.736 0.860 0.573 CAD 2RG 11 2RG CAE CAE C 0 1 N N R N N N -10.154 -13.240 5.263 7.017 0.832 1.594 CAE 2RG 12 2RG CAF CAF C 0 1 N N N N N N -8.817 -13.871 4.868 8.484 1.214 1.384 CAF 2RG 13 2RG OAG OAG O 0 1 N N N N N N -10.261 -13.107 6.697 6.509 1.507 2.747 OAG 2RG 14 2RG CAH CAH C 0 1 N N R N N N -8.397 -10.592 3.655 3.878 1.353 -0.616 CAH 2RG 15 2RG CAI CAI C 0 1 N N S N N N -8.096 -9.083 3.739 2.872 0.184 -0.751 CAI 2RG 16 2RG NAJ NAJ N 0 1 N N N N N N -10.053 -9.510 5.047 4.584 -0.600 0.574 NAJ 2RG 17 2RG SAK SAK S 0 1 N N N N N N -6.623 -8.777 4.803 1.344 0.550 0.157 SAK 2RG 18 2RG CAL CAL C 0 1 N N N N N N -9.375 -8.564 4.407 3.594 -0.988 -0.125 CAL 2RG 19 2RG CAM CAM C 0 1 N N N N N N -9.896 -7.139 4.354 3.199 -2.406 -0.303 CAM 2RG 20 2RG CAS CAS C 0 1 N N N N N N -9.002 -10.993 2.309 4.724 1.503 -1.882 CAS 2RG 21 2RG OAT OAT O 0 1 N N N N N N -10.966 -6.904 4.942 3.907 -3.382 0.296 OAT 2RG 22 2RG OAU OAU O 0 1 N N N N N N -9.236 -6.284 3.747 2.238 -2.687 -0.989 OAU 2RG 23 2RG NAX NAX N 0 1 N N N N N N -1.907 -8.051 4.554 -4.286 -1.273 0.570 NAX 2RG 24 2RG CAY CAY C 0 1 Y N N N N N -0.875 -8.770 5.005 -5.513 -0.692 0.911 CAY 2RG 25 2RG CAZ CAZ C 0 1 Y N N N N N -0.951 -10.158 5.202 -6.232 0.014 -0.040 CAZ 2RG 26 2RG CBA CBA C 0 1 Y N N N N N 0.153 -10.839 5.714 -7.455 0.592 0.305 CBA 2RG 27 2RG CBB CBB C 0 1 Y N N N N N 1.314 -10.143 6.044 -7.945 0.453 1.605 CBB 2RG 28 2RG CBC CBC C 0 1 Y N N N N N 1.398 -8.768 5.854 -7.221 -0.252 2.544 CBC 2RG 29 2RG CBD CBD C 0 1 Y N N N N N 0.291 -8.084 5.348 -6.012 -0.829 2.201 CBD 2RG 30 2RG CBE CBE C 0 1 N N N N N N 0.103 -12.347 5.943 -8.228 1.347 -0.702 CBE 2RG 31 2RG OBF OBF O 0 1 N N N N N N -0.937 -12.958 5.666 -7.800 1.467 -1.833 OBF 2RG 32 2RG OBG OBG O 0 1 N N N N N N 1.110 -12.890 6.411 -9.408 1.903 -0.367 OBG 2RG 33 2RG HN HN H 0 1 N N N N N N -5.058 -8.575 2.437 -1.807 0.298 -1.963 HN 2RG 34 2RG HA HA H 0 1 N N N N N N -3.323 -6.300 3.026 -2.133 -2.309 -0.616 HA 2RG 35 2RG HB HB H 0 1 N N N N N N -4.255 -7.632 5.471 -1.274 0.296 0.764 HB 2RG 36 2RG HBA HBA H 0 1 N N N N N N -4.349 -5.893 5.031 -1.096 -1.386 1.357 HBA 2RG 37 2RG HD HD H 0 1 N N N N N N -5.951 -5.762 2.632 0.221 -1.760 -2.230 HD 2RG 38 2RG HDA HDA H 0 1 N N N N N N -6.979 -7.216 2.400 0.409 0.016 -2.242 HDA 2RG 39 2RG HG HG H 0 1 N N N N N N -6.667 -6.357 4.902 0.766 -1.793 -0.006 HG 2RG 40 2RG HAA HAA H 0 1 N N N N N N -12.083 -11.723 6.184 6.636 -0.541 -0.940 HAA 2RG 41 2RG HAB HAB H 0 1 N N N N N N -10.561 -12.035 3.514 6.281 2.319 0.219 HAB 2RG 42 2RG HAD HAD H 0 1 N N N N N N -8.784 -11.072 5.744 4.366 1.280 1.509 HAD 2RG 43 2RG HAE HAE H 0 1 N N N N N N -10.942 -13.931 4.930 6.939 -0.245 1.739 HAE 2RG 44 2RG HAF HAF H 0 1 N N N N N N -8.696 -14.832 5.390 8.562 2.291 1.239 HAF 2RG 45 2RG HAFA HAFA H 0 0 N N N N N N -8.798 -14.039 3.781 9.063 0.922 2.260 HAFA 2RG 46 2RG HAFB HAFB H 0 0 N N N N N N -7.996 -13.195 5.149 8.871 0.699 0.505 HAFB 2RG 47 2RG HOAG HOAG H 0 0 N N N N N N -10.082 -13.945 7.107 6.548 2.471 2.687 HOAG 2RG 48 2RG HAH HAH H 0 1 N N N N N N -7.472 -11.161 3.829 3.368 2.285 -0.373 HAH 2RG 49 2RG HAI HAI H 0 1 N N N N N N -7.919 -8.632 2.752 2.655 -0.015 -1.801 HAI 2RG 50 2RG HAS HAS H 0 1 N N N N N N -8.268 -10.816 1.509 5.132 0.532 -2.163 HAS 2RG 51 2RG HASA HASA H 0 0 N N N N N N -9.270 -12.060 2.331 4.101 1.883 -2.692 HASA 2RG 52 2RG HASB HASB H 0 0 N N N N N N -9.904 -10.392 2.119 5.540 2.200 -1.693 HASB 2RG 53 2RG HOAT HOAT H 0 0 N N N N N N -11.184 -5.984 4.849 3.612 -4.292 0.151 HOAT 2RG 54 2RG HNAX HNAX H 0 0 N N N N N N -2.063 -7.180 5.019 -4.027 -2.123 0.960 HNAX 2RG 55 2RG HAZ HAZ H 0 1 N N N N N N -1.857 -10.694 4.959 -5.848 0.118 -1.044 HAZ 2RG 56 2RG HBB HBB H 0 1 N N N N N N 2.159 -10.678 6.452 -8.891 0.899 1.876 HBB 2RG 57 2RG HBC HBC H 0 1 N N N N N N 2.307 -8.237 6.095 -7.601 -0.358 3.549 HBC 2RG 58 2RG HBD HBD H 0 1 N N N N N N 0.337 -7.013 5.221 -5.451 -1.383 2.939 HBD 2RG 59 2RG HOBG HOBG H 0 0 N N N N N N 0.949 -13.820 6.515 -9.878 2.388 -1.060 HOBG 2RG 60 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2RG O C DOUB N N 1 2RG CA C SING N N 2 2RG C NAX SING N N 3 2RG N CD SING N N 4 2RG N CA SING N N 5 2RG N HN SING N N 6 2RG CA CB SING N N 7 2RG CA HA SING N N 8 2RG CG CB SING N N 9 2RG CB HB SING N N 10 2RG CB HBA SING N N 11 2RG CD CG SING N N 12 2RG CD HD SING N N 13 2RG CD HDA SING N N 14 2RG CG SAK SING N N 15 2RG CG HG SING N N 16 2RG OAC CAA DOUB N N 17 2RG CAB CAA SING N N 18 2RG CAA HAA SING N N 19 2RG CAB CAD SING N N 20 2RG CAB CAE SING N N 21 2RG CAB HAB SING N N 22 2RG CAH CAD SING N N 23 2RG CAD NAJ SING N N 24 2RG CAD HAD SING N N 25 2RG CAF CAE SING N N 26 2RG CAE OAG SING N N 27 2RG CAE HAE SING N N 28 2RG CAF HAF SING N N 29 2RG CAF HAFA SING N N 30 2RG CAF HAFB SING N N 31 2RG OAG HOAG SING N N 32 2RG CAS CAH SING N N 33 2RG CAH CAI SING N N 34 2RG CAH HAH SING N N 35 2RG CAI CAL SING N N 36 2RG CAI SAK SING N N 37 2RG CAI HAI SING N N 38 2RG CAL NAJ DOUB N N 39 2RG CAM CAL SING N N 40 2RG OAU CAM DOUB N N 41 2RG CAM OAT SING N N 42 2RG CAS HAS SING N N 43 2RG CAS HASA SING N N 44 2RG CAS HASB SING N N 45 2RG OAT HOAT SING N N 46 2RG NAX CAY SING N N 47 2RG NAX HNAX SING N N 48 2RG CAY CAZ DOUB Y N 49 2RG CAY CBD SING Y N 50 2RG CAZ CBA SING Y N 51 2RG CAZ HAZ SING N N 52 2RG CBA CBE SING N N 53 2RG CBA CBB DOUB Y N 54 2RG CBC CBB SING Y N 55 2RG CBB HBB SING N N 56 2RG CBD CBC DOUB Y N 57 2RG CBC HBC SING N N 58 2RG CBD HBD SING N N 59 2RG OBF CBE DOUB N N 60 2RG CBE OBG SING N N 61 2RG OBG HOBG SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2RG SMILES ACDLabs 12.01 "O=C(O)c1cc(ccc1)NC(=O)C3NCC(SC2C(=NC(C2C)C(C=O)C(O)C)C(=O)O)C3" 2RG InChI InChI 1.03 "InChI=1S/C22H27N3O7S/c1-10-17(15(9-26)11(2)27)25-18(22(31)32)19(10)33-14-7-16(23-8-14)20(28)24-13-5-3-4-12(6-13)21(29)30/h3-6,9-11,14-17,19,23,27H,7-8H2,1-2H3,(H,24,28)(H,29,30)(H,31,32)/t10-,11-,14+,15-,16+,17-,19+/m1/s1" 2RG InChIKey InChI 1.03 RALHTEQYPKBGFO-SAGZMZRGSA-N 2RG SMILES_CANONICAL CACTVS 3.370 "C[C@@H](O)[C@@H](C=O)[C@@H]1N=C([C@@H](S[C@@H]2CN[C@@H](C2)C(=O)Nc3cccc(c3)C(O)=O)[C@@H]1C)C(O)=O" 2RG SMILES CACTVS 3.370 "C[CH](O)[CH](C=O)[CH]1N=C([CH](S[CH]2CN[CH](C2)C(=O)Nc3cccc(c3)C(O)=O)[CH]1C)C(O)=O" 2RG SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C[C@H]1[C@@H](C(=N[C@H]1[C@H](C=O)[C@@H](C)O)C(=O)O)S[C@H]2C[C@H](NC2)C(=O)Nc3cccc(c3)C(=O)O" 2RG SMILES "OpenEye OEToolkits" 1.7.6 "CC1C(C(=NC1C(C=O)C(C)O)C(=O)O)SC2CC(NC2)C(=O)Nc3cccc(c3)C(=O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2RG "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3R,4S)-4-({(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl}sulfanyl)-2-[(2S,3R)-3-hydroxy-1-oxobutan-2-yl]-3-methyl-3,4-dihydro-2H-pyrrole-5-carboxylic acid" 2RG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2S,3R,4S)-4-[(3S,5S)-5-[(3-carboxyphenyl)carbamoyl]pyrrolidin-3-yl]sulfanyl-3-methyl-2-[(2S,3R)-3-oxidanyl-1-oxidanylidene-butan-2-yl]-3,4-dihydro-2H-pyrrole-5-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2RG "Create component" 2010-04-07 RCSB 2RG "Modify aromatic_flag" 2011-06-04 RCSB 2RG "Modify descriptor" 2011-06-04 RCSB 2RG "Modify synonyms" 2012-05-09 RCSB 2RG "Modify synonyms" 2021-03-13 RCSB 2RG "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2RG _pdbx_chem_comp_synonyms.name "ERTAPENEM, bound form POST-ISOMERIZED" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 2RG SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" CAA OG ? ? 2 2RG CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CAA SG ? ? #