data_2S6
#
_chem_comp.id 2S6
_chem_comp.name "4-(3-{4-[(R)-cyclopentyl(hydroxy)phenylmethyl]piperidin-1-yl}propoxy)benzonitrile"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H34 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-17
_chem_comp.pdbx_modified_date 2014-02-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 418.571
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2S6
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4OG3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2S6 CAK CAK C 0 1 Y N N -10.709 19.253 -13.378 -6.997 1.318 -0.862 CAK 2S6 1
2S6 CAI CAI C 0 1 Y N N -10.145 20.416 -13.874 -8.338 1.209 -0.570 CAI 2S6 2
2S6 CAY CAY C 0 1 Y N N -8.774 20.546 -13.956 -8.792 0.170 0.247 CAY 2S6 3
2S6 CAC CAC C 0 1 N N N -8.200 21.737 -14.473 -10.186 0.052 0.552 CAC 2S6 4
2S6 NAA NAA N 0 1 N N N -7.771 22.705 -14.905 -11.292 -0.040 0.795 NAA 2S6 5
2S6 CAJ CAJ C 0 1 Y N N -7.982 19.487 -13.526 -7.881 -0.755 0.764 CAJ 2S6 6
2S6 CAL CAL C 0 1 Y N N -8.536 18.294 -13.046 -6.541 -0.639 0.468 CAL 2S6 7
2S6 CAZ CAZ C 0 1 Y N N -9.914 18.172 -12.988 -6.094 0.396 -0.345 CAZ 2S6 8
2S6 OAX OAX O 0 1 N N N -10.543 17.040 -12.546 -4.773 0.503 -0.640 OAX 2S6 9
2S6 CAP CAP C 0 1 N N N -9.797 15.874 -12.164 -3.901 -0.478 -0.075 CAP 2S6 10
2S6 CAO CAO C 0 1 N N N -10.745 15.002 -11.290 -2.463 -0.195 -0.516 CAO 2S6 11
2S6 CAU CAU C 0 1 N N N -11.608 14.287 -12.292 -1.529 -1.246 0.089 CAU 2S6 12
2S6 NBD NBD N 0 1 N N N -12.754 13.540 -11.653 -0.148 -0.974 -0.334 NBD 2S6 13
2S6 CAW CAW C 0 1 N N N -13.454 12.705 -12.623 0.334 0.294 0.227 CAW 2S6 14
2S6 CAT CAT C 0 1 N N N -14.631 11.958 -12.029 1.715 0.615 -0.348 CAT 2S6 15
2S6 CAV CAV C 0 1 N N N -12.140 12.496 -10.716 0.740 -2.087 0.026 CAV 2S6 16
2S6 CAS CAS C 0 1 N N N -13.229 11.722 -9.895 2.134 -1.836 -0.555 CAS 2S6 17
2S6 CBC CBC C 0 1 N N N -14.119 10.985 -10.979 2.684 -0.519 -0.001 CBC 2S6 18
2S6 CBE CBE C 0 1 N N R -15.242 10.057 -10.405 4.051 -0.233 -0.626 CBE 2S6 19
2S6 CBB CBB C 0 1 N N N -14.606 9.085 -9.378 5.017 -1.367 -0.278 CBB 2S6 20
2S6 CAQ CAQ C 0 1 N N N -13.507 8.107 -9.894 5.201 -1.481 1.255 CAQ 2S6 21
2S6 CAM CAM C 0 1 N N N -13.287 7.289 -8.597 6.571 -2.171 1.422 CAM 2S6 22
2S6 CAN CAN C 0 1 N N N -14.698 7.232 -7.884 7.365 -1.889 0.134 CAN 2S6 23
2S6 CAR CAR C 0 1 N N N -15.639 8.085 -8.667 6.449 -1.038 -0.771 CAR 2S6 24
2S6 OAB OAB O 0 1 N N N -16.159 10.896 -9.732 3.916 -0.140 -2.045 OAB 2S6 25
2S6 CBA CBA C 0 1 Y N N -15.923 9.306 -11.422 4.587 1.067 -0.085 CBA 2S6 26
2S6 CAG CAG C 0 1 Y N N -17.309 9.166 -11.400 4.327 1.433 1.222 CAG 2S6 27
2S6 CAE CAE C 0 1 Y N N -17.981 8.419 -12.370 4.819 2.626 1.718 CAE 2S6 28
2S6 CAD CAD C 0 1 Y N N -17.243 7.844 -13.417 5.571 3.454 0.906 CAD 2S6 29
2S6 CAF CAF C 0 1 Y N N -15.877 7.964 -13.468 5.831 3.089 -0.402 CAF 2S6 30
2S6 CAH CAH C 0 1 Y N N -15.238 8.722 -12.504 5.344 1.893 -0.896 CAH 2S6 31
2S6 H1 H1 H 0 1 N N N -11.783 19.180 -13.291 -6.646 2.118 -1.497 H1 2S6 32
2S6 H2 H2 H 0 1 N N N -10.782 21.226 -14.198 -9.039 1.926 -0.972 H2 2S6 33
2S6 H3 H3 H 0 1 N N N -6.907 19.588 -13.563 -8.227 -1.560 1.396 H3 2S6 34
2S6 H4 H4 H 0 1 N N N -7.899 17.482 -12.726 -5.836 -1.354 0.867 H4 2S6 35
2S6 H5 H5 H 0 1 N N N -9.484 15.314 -13.058 -3.963 -0.437 1.012 H5 2S6 36
2S6 H6 H6 H 0 1 N N N -8.909 16.166 -11.585 -4.198 -1.469 -0.419 H6 2S6 37
2S6 H7 H7 H 0 1 N N N -11.356 15.632 -10.627 -2.401 -0.236 -1.603 H7 2S6 38
2S6 H8 H8 H 0 1 N N N -10.170 14.284 -10.686 -2.166 0.796 -0.172 H8 2S6 39
2S6 H9 H9 H 0 1 N N N -10.984 13.568 -12.843 -1.591 -1.205 1.176 H9 2S6 40
2S6 H10 H10 H 0 1 N N N -12.019 15.028 -12.993 -1.826 -2.237 -0.255 H10 2S6 41
2S6 H12 H12 H 0 1 N N N -12.743 11.971 -13.030 -0.361 1.093 -0.030 H12 2S6 42
2S6 H13 H13 H 0 1 N N N -13.822 13.348 -13.436 0.403 0.208 1.311 H13 2S6 43
2S6 H14 H14 H 0 1 N N N -15.325 12.673 -11.563 1.644 0.715 -1.431 H14 2S6 44
2S6 H15 H15 H 0 1 N N N -15.154 11.404 -12.822 2.080 1.549 0.080 H15 2S6 45
2S6 H16 H16 H 0 1 N N N -11.569 11.773 -11.317 0.808 -2.161 1.111 H16 2S6 46
2S6 H17 H17 H 0 1 N N N -11.463 13.005 -10.014 0.340 -3.017 -0.378 H17 2S6 47
2S6 H18 H18 H 0 1 N N N -13.839 12.423 -9.306 2.797 -2.654 -0.275 H18 2S6 48
2S6 H19 H19 H 0 1 N N N -12.758 10.991 -9.221 2.069 -1.776 -1.642 H19 2S6 49
2S6 H20 H20 H 0 1 N N N -13.428 10.312 -11.507 2.786 -0.593 1.081 H20 2S6 50
2S6 H21 H21 H 0 1 N N N -14.154 9.695 -8.582 4.671 -2.311 -0.700 H21 2S6 51
2S6 H22 H22 H 0 1 N N N -13.868 7.479 -10.722 5.214 -0.492 1.713 H22 2S6 52
2S6 H23 H23 H 0 1 N N N -12.596 8.638 -10.207 4.411 -2.093 1.690 H23 2S6 53
2S6 H24 H24 H 0 1 N N N -12.938 6.274 -8.838 7.096 -1.755 2.282 H24 2S6 54
2S6 H25 H25 H 0 1 N N N -12.550 7.787 -7.950 6.436 -3.244 1.550 H25 2S6 55
2S6 H26 H26 H 0 1 N N N -14.614 7.614 -6.856 8.274 -1.337 0.369 H26 2S6 56
2S6 H27 H27 H 0 1 N N N -15.064 6.195 -7.861 7.615 -2.826 -0.363 H27 2S6 57
2S6 H28 H28 H 0 1 N N N -16.340 8.623 -8.012 6.569 -1.327 -1.815 H28 2S6 58
2S6 H29 H29 H 0 1 N N N -16.205 7.495 -9.403 6.663 0.022 -0.640 H29 2S6 59
2S6 H30 H30 H 0 1 N N N -15.703 11.390 -9.061 3.317 0.560 -2.338 H30 2S6 60
2S6 H31 H31 H 0 1 N N N -17.876 9.646 -10.616 3.740 0.786 1.857 H31 2S6 61
2S6 H32 H32 H 0 1 N N N -19.051 8.286 -12.316 4.616 2.911 2.740 H32 2S6 62
2S6 H33 H33 H 0 1 N N N -17.758 7.299 -14.194 5.955 4.386 1.293 H33 2S6 63
2S6 H34 H34 H 0 1 N N N -15.311 7.475 -14.247 6.418 3.736 -1.037 H34 2S6 64
2S6 H35 H35 H 0 1 N N N -14.171 8.872 -12.585 5.548 1.608 -1.917 H35 2S6 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2S6 NAA CAC TRIP N N 1
2S6 CAC CAY SING N N 2
2S6 CAY CAI DOUB Y N 3
2S6 CAY CAJ SING Y N 4
2S6 CAI CAK SING Y N 5
2S6 CAJ CAL DOUB Y N 6
2S6 CAF CAD DOUB Y N 7
2S6 CAF CAH SING Y N 8
2S6 CAD CAE SING Y N 9
2S6 CAK CAZ DOUB Y N 10
2S6 CAL CAZ SING Y N 11
2S6 CAZ OAX SING N N 12
2S6 CAW CAT SING N N 13
2S6 CAW NBD SING N N 14
2S6 OAX CAP SING N N 15
2S6 CAH CBA DOUB Y N 16
2S6 CAE CAG DOUB Y N 17
2S6 CAU NBD SING N N 18
2S6 CAU CAO SING N N 19
2S6 CAP CAO SING N N 20
2S6 CAT CBC SING N N 21
2S6 NBD CAV SING N N 22
2S6 CBA CAG SING Y N 23
2S6 CBA CBE SING N N 24
2S6 CBC CBE SING N N 25
2S6 CBC CAS SING N N 26
2S6 CAV CAS SING N N 27
2S6 CBE OAB SING N N 28
2S6 CBE CBB SING N N 29
2S6 CAQ CBB SING N N 30
2S6 CAQ CAM SING N N 31
2S6 CBB CAR SING N N 32
2S6 CAR CAN SING N N 33
2S6 CAM CAN SING N N 34
2S6 CAK H1 SING N N 35
2S6 CAI H2 SING N N 36
2S6 CAJ H3 SING N N 37
2S6 CAL H4 SING N N 38
2S6 CAP H5 SING N N 39
2S6 CAP H6 SING N N 40
2S6 CAO H7 SING N N 41
2S6 CAO H8 SING N N 42
2S6 CAU H9 SING N N 43
2S6 CAU H10 SING N N 44
2S6 CAW H12 SING N N 45
2S6 CAW H13 SING N N 46
2S6 CAT H14 SING N N 47
2S6 CAT H15 SING N N 48
2S6 CAV H16 SING N N 49
2S6 CAV H17 SING N N 50
2S6 CAS H18 SING N N 51
2S6 CAS H19 SING N N 52
2S6 CBC H20 SING N N 53
2S6 CBB H21 SING N N 54
2S6 CAQ H22 SING N N 55
2S6 CAQ H23 SING N N 56
2S6 CAM H24 SING N N 57
2S6 CAM H25 SING N N 58
2S6 CAN H26 SING N N 59
2S6 CAN H27 SING N N 60
2S6 CAR H28 SING N N 61
2S6 CAR H29 SING N N 62
2S6 OAB H30 SING N N 63
2S6 CAG H31 SING N N 64
2S6 CAE H32 SING N N 65
2S6 CAD H33 SING N N 66
2S6 CAF H34 SING N N 67
2S6 CAH H35 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2S6 SMILES ACDLabs 12.01 "N#Cc4ccc(OCCCN1CCC(CC1)C(O)(c2ccccc2)C3CCCC3)cc4"
2S6 InChI InChI 1.03 "InChI=1S/C27H34N2O2/c28-21-22-11-13-26(14-12-22)31-20-6-17-29-18-15-25(16-19-29)27(30,24-9-4-5-10-24)23-7-2-1-3-8-23/h1-3,7-8,11-14,24-25,30H,4-6,9-10,15-20H2/t27-/m1/s1"
2S6 InChIKey InChI 1.03 QBITUTDDFZQXDO-HHHXNRCGSA-N
2S6 SMILES_CANONICAL CACTVS 3.385 "O[C@](C1CCCC1)(C2CCN(CCCOc3ccc(cc3)C#N)CC2)c4ccccc4"
2S6 SMILES CACTVS 3.385 "O[C](C1CCCC1)(C2CCN(CCCOc3ccc(cc3)C#N)CC2)c4ccccc4"
2S6 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)[C@@](C2CCCC2)(C3CCN(CC3)CCCOc4ccc(cc4)C#N)O"
2S6 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccc(cc1)C(C2CCCC2)(C3CCN(CC3)CCCOc4ccc(cc4)C#N)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2S6 "SYSTEMATIC NAME" ACDLabs 12.01 "4-(3-{4-[(R)-cyclopentyl(hydroxy)phenylmethyl]piperidin-1-yl}propoxy)benzonitrile"
2S6 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[3-[4-[(R)-cyclopentyl-oxidanyl-phenyl-methyl]piperidin-1-yl]propoxy]benzenecarbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2S6 "Create component" 2014-01-17 RCSB
2S6 "Initial release" 2014-03-05 RCSB
#