data_2S7
#
_chem_comp.id 2S7
_chem_comp.name "4-(3-{4-[(S)-cyclopentyl(hydroxy)pyridin-2-ylmethyl]piperidin-1-yl}propoxy)benzonitrile"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H33 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2014-01-16
_chem_comp.pdbx_modified_date 2014-02-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 419.559
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 2S7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4OG5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
2S7 CAJ CAJ C 0 1 Y N N -8.466 17.933 -13.037 -6.831 1.316 0.662 CAJ 2S7 1
2S7 CAH CAH C 0 1 Y N N -7.919 19.138 -13.510 -8.184 1.077 0.562 CAH 2S7 2
2S7 CAY CAY C 0 1 Y N N -8.714 20.207 -13.853 -8.642 -0.109 -0.018 CAY 2S7 3
2S7 CAC CAC C 0 1 N N N -8.156 21.456 -14.411 -10.047 -0.361 -0.124 CAC 2S7 4
2S7 NAA NAA N 0 1 N N N -7.771 22.392 -14.826 -11.163 -0.560 -0.209 NAA 2S7 5
2S7 CAI CAI C 0 1 Y N N -10.072 20.163 -13.678 -7.723 -1.049 -0.493 CAI 2S7 6
2S7 CAK CAK C 0 1 Y N N -10.641 18.977 -13.199 -6.372 -0.803 -0.389 CAK 2S7 7
2S7 CAZ CAZ C 0 1 Y N N -9.818 17.882 -12.870 -5.922 0.378 0.188 CAZ 2S7 8
2S7 OAX OAX O 0 1 N N N -10.427 16.736 -12.406 -4.589 0.619 0.284 OAX 2S7 9
2S7 CAO CAO C 0 1 N N N -9.565 15.635 -12.114 -3.710 -0.387 -0.223 CAO 2S7 10
2S7 CAN CAN C 0 1 N N N -10.495 14.622 -11.402 -2.259 0.058 -0.028 CAN 2S7 11
2S7 CAT CAT C 0 1 N N N -11.382 13.991 -12.446 -1.318 -1.019 -0.571 CAT 2S7 12
2S7 NBD NBD N 0 1 N N N -12.381 13.074 -11.764 0.075 -0.591 -0.384 NBD 2S7 13
2S7 CAV CAV C 0 1 N N N -11.809 11.799 -11.193 0.999 -1.480 -1.100 CAV 2S7 14
2S7 CAS CAS C 0 1 N N N -12.826 11.071 -10.343 2.422 -0.923 -1.005 CAS 2S7 15
2S7 CAU CAU C 0 1 N N N -13.377 12.681 -12.745 0.414 -0.510 1.042 CAU 2S7 16
2S7 CAR CAR C 0 1 N N N -14.475 11.726 -12.168 1.819 0.076 1.201 CAR 2S7 17
2S7 CBC CBC C 0 1 N N N -13.886 10.539 -11.371 2.825 -0.816 0.469 CBC 2S7 18
2S7 CBE CBE C 0 1 N N S -15.032 9.690 -10.699 4.223 -0.204 0.573 CBE 2S7 19
2S7 CBB CBB C 0 1 N N N -16.090 9.217 -11.757 5.202 -1.019 -0.274 CBB 2S7 20
2S7 CAP CAP C 0 1 N N N -15.617 8.345 -12.916 6.640 -0.463 -0.127 CAP 2S7 21
2S7 CAL CAL C 0 1 N N N -16.890 7.984 -13.588 7.518 -1.683 -0.499 CAL 2S7 22
2S7 CAM CAM C 0 1 N N N -17.873 7.746 -12.401 6.772 -2.887 0.113 CAM 2S7 23
2S7 CAQ CAQ C 0 1 N N N -17.214 8.304 -11.184 5.300 -2.465 0.256 CAQ 2S7 24
2S7 OAB OAB O 0 1 N N N -15.724 10.538 -9.792 4.648 -0.216 1.937 OAB 2S7 25
2S7 CBA CBA C 0 1 Y N N -14.476 8.568 -9.953 4.187 1.217 0.071 CBA 2S7 26
2S7 NAW NAW N 0 1 Y N N -13.470 7.868 -10.527 4.275 1.453 -1.223 NAW 2S7 27
2S7 CAF CAF C 0 1 Y N N -12.932 6.762 -9.885 4.248 2.680 -1.708 CAF 2S7 28
2S7 CAD CAD C 0 1 Y N N -13.367 6.394 -8.625 4.126 3.769 -0.867 CAD 2S7 29
2S7 CAE CAE C 0 1 Y N N -14.401 7.110 -8.015 4.031 3.560 0.501 CAE 2S7 30
2S7 CAG CAG C 0 1 Y N N -14.928 8.224 -8.675 4.057 2.257 0.972 CAG 2S7 31
2S7 H1 H1 H 0 1 N N N -7.840 17.081 -12.815 -6.477 2.234 1.106 H1 2S7 32
2S7 H2 H2 H 0 1 N N N -6.847 19.227 -13.607 -8.890 1.807 0.931 H2 2S7 33
2S7 H3 H3 H 0 1 N N N -10.688 21.021 -13.904 -8.073 -1.968 -0.941 H3 2S7 34
2S7 H4 H4 H 0 1 N N N -11.712 18.901 -13.082 -5.662 -1.530 -0.756 H4 2S7 35
2S7 H5 H5 H 0 1 N N N -9.150 15.205 -13.038 -3.878 -1.321 0.314 H5 2S7 36
2S7 H6 H6 H 0 1 N N N -8.743 15.945 -11.453 -3.904 -0.538 -1.285 H6 2S7 37
2S7 H7 H7 H 0 1 N N N -11.111 15.142 -10.654 -2.091 0.992 -0.565 H7 2S7 38
2S7 H8 H8 H 0 1 N N N -9.893 13.847 -10.906 -2.065 0.209 1.033 H8 2S7 39
2S7 H9 H9 H 0 1 N N N -10.767 13.408 -13.148 -1.486 -1.952 -0.035 H9 2S7 40
2S7 H10 H10 H 0 1 N N N -11.920 14.777 -12.996 -1.512 -1.170 -1.633 H10 2S7 41
2S7 H12 H12 H 0 1 N N N -11.499 11.144 -12.020 0.967 -2.473 -0.653 H12 2S7 42
2S7 H13 H13 H 0 1 N N N -10.935 12.045 -10.573 0.704 -1.544 -2.147 H13 2S7 43
2S7 H14 H14 H 0 1 N N N -13.294 11.758 -9.622 3.109 -1.592 -1.523 H14 2S7 44
2S7 H15 H15 H 0 1 N N N -12.355 10.237 -9.802 2.458 0.064 -1.465 H15 2S7 45
2S7 H16 H16 H 0 1 N N N -12.867 12.166 -13.573 -0.306 0.131 1.551 H16 2S7 46
2S7 H17 H17 H 0 1 N N N -13.869 13.588 -13.125 0.385 -1.508 1.480 H17 2S7 47
2S7 H18 H18 H 0 1 N N N -15.129 12.306 -11.500 1.845 1.079 0.776 H18 2S7 48
2S7 H19 H19 H 0 1 N N N -15.067 11.327 -13.005 2.076 0.121 2.260 H19 2S7 49
2S7 H20 H20 H 0 1 N N N -13.361 9.883 -12.081 2.828 -1.809 0.919 H20 2S7 50
2S7 H21 H21 H 0 1 N N N -16.567 10.115 -12.176 4.894 -1.016 -1.320 H21 2S7 51
2S7 H22 H22 H 0 1 N N N -15.092 7.450 -12.551 6.808 0.361 -0.822 H22 2S7 52
2S7 H23 H23 H 0 1 N N N -14.956 8.907 -13.592 6.828 -0.146 0.898 H23 2S7 53
2S7 H24 H24 H 0 1 N N N -17.241 8.804 -14.231 7.587 -1.787 -1.582 H24 2S7 54
2S7 H25 H25 H 0 1 N N N -16.772 7.071 -14.190 8.511 -1.586 -0.061 H25 2S7 55
2S7 H26 H26 H 0 1 N N N -18.826 8.263 -12.588 6.851 -3.750 -0.548 H26 2S7 56
2S7 H27 H27 H 0 1 N N N -18.059 6.670 -12.272 7.189 -3.126 1.091 H27 2S7 57
2S7 H28 H28 H 0 1 N N N -17.927 8.889 -10.585 5.002 -2.499 1.304 H28 2S7 58
2S7 H29 H29 H 0 1 N N N -16.789 7.500 -10.565 4.663 -3.123 -0.335 H29 2S7 59
2S7 H30 H30 H 0 1 N N N -15.121 10.852 -9.128 4.073 0.283 2.533 H30 2S7 60
2S7 H31 H31 H 0 1 N N N -12.164 6.182 -10.375 4.323 2.834 -2.774 H31 2S7 61
2S7 H32 H32 H 0 1 N N N -12.911 5.558 -8.115 4.105 4.771 -1.270 H32 2S7 62
2S7 H33 H33 H 0 1 N N N -14.786 6.808 -7.052 3.934 4.393 1.182 H33 2S7 63
2S7 H34 H34 H 0 1 N N N -15.688 8.822 -8.195 3.981 2.057 2.031 H34 2S7 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
2S7 NAA CAC TRIP N N 1
2S7 CAC CAY SING N N 2
2S7 CAY CAI DOUB Y N 3
2S7 CAY CAH SING Y N 4
2S7 CAI CAK SING Y N 5
2S7 CAL CAP SING N N 6
2S7 CAL CAM SING N N 7
2S7 CAH CAJ DOUB Y N 8
2S7 CAK CAZ DOUB Y N 9
2S7 CAJ CAZ SING Y N 10
2S7 CAP CBB SING N N 11
2S7 CAZ OAX SING N N 12
2S7 CAU CAR SING N N 13
2S7 CAU NBD SING N N 14
2S7 CAT NBD SING N N 15
2S7 CAT CAN SING N N 16
2S7 OAX CAO SING N N 17
2S7 CAM CAQ SING N N 18
2S7 CAR CBC SING N N 19
2S7 CAO CAN SING N N 20
2S7 NBD CAV SING N N 21
2S7 CBB CAQ SING N N 22
2S7 CBB CBE SING N N 23
2S7 CBC CBE SING N N 24
2S7 CBC CAS SING N N 25
2S7 CAV CAS SING N N 26
2S7 CBE CBA SING N N 27
2S7 CBE OAB SING N N 28
2S7 NAW CBA DOUB Y N 29
2S7 NAW CAF SING Y N 30
2S7 CBA CAG SING Y N 31
2S7 CAF CAD DOUB Y N 32
2S7 CAG CAE DOUB Y N 33
2S7 CAD CAE SING Y N 34
2S7 CAJ H1 SING N N 35
2S7 CAH H2 SING N N 36
2S7 CAI H3 SING N N 37
2S7 CAK H4 SING N N 38
2S7 CAO H5 SING N N 39
2S7 CAO H6 SING N N 40
2S7 CAN H7 SING N N 41
2S7 CAN H8 SING N N 42
2S7 CAT H9 SING N N 43
2S7 CAT H10 SING N N 44
2S7 CAV H12 SING N N 45
2S7 CAV H13 SING N N 46
2S7 CAS H14 SING N N 47
2S7 CAS H15 SING N N 48
2S7 CAU H16 SING N N 49
2S7 CAU H17 SING N N 50
2S7 CAR H18 SING N N 51
2S7 CAR H19 SING N N 52
2S7 CBC H20 SING N N 53
2S7 CBB H21 SING N N 54
2S7 CAP H22 SING N N 55
2S7 CAP H23 SING N N 56
2S7 CAL H24 SING N N 57
2S7 CAL H25 SING N N 58
2S7 CAM H26 SING N N 59
2S7 CAM H27 SING N N 60
2S7 CAQ H28 SING N N 61
2S7 CAQ H29 SING N N 62
2S7 OAB H30 SING N N 63
2S7 CAF H31 SING N N 64
2S7 CAD H32 SING N N 65
2S7 CAE H33 SING N N 66
2S7 CAG H34 SING N N 67
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
2S7 SMILES ACDLabs 12.01 "N#Cc4ccc(OCCCN1CCC(CC1)C(O)(c2ncccc2)C3CCCC3)cc4"
2S7 InChI InChI 1.03 "InChI=1S/C26H33N3O2/c27-20-21-9-11-24(12-10-21)31-19-5-16-29-17-13-23(14-18-29)26(30,22-6-1-2-7-22)25-8-3-4-15-28-25/h3-4,8-12,15,22-23,30H,1-2,5-7,13-14,16-19H2/t26-/m0/s1"
2S7 InChIKey InChI 1.03 CXFJNJZPBYIKCK-SANMLTNESA-N
2S7 SMILES_CANONICAL CACTVS 3.385 "O[C@@](C1CCCC1)(C2CCN(CCCOc3ccc(cc3)C#N)CC2)c4ccccn4"
2S7 SMILES CACTVS 3.385 "O[C](C1CCCC1)(C2CCN(CCCOc3ccc(cc3)C#N)CC2)c4ccccn4"
2S7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "c1ccnc(c1)[C@](C2CCCC2)(C3CCN(CC3)CCCOc4ccc(cc4)C#N)O"
2S7 SMILES "OpenEye OEToolkits" 1.7.6 "c1ccnc(c1)C(C2CCCC2)(C3CCN(CC3)CCCOc4ccc(cc4)C#N)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
2S7 "SYSTEMATIC NAME" ACDLabs 12.01 "4-(3-{4-[(S)-cyclopentyl(hydroxy)pyridin-2-ylmethyl]piperidin-1-yl}propoxy)benzonitrile"
2S7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "4-[3-[4-[(S)-cyclopentyl-oxidanyl-pyridin-2-yl-methyl]piperidin-1-yl]propoxy]benzenecarbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
2S7 "Create component" 2014-01-16 RCSB
2S7 "Initial release" 2014-03-05 RCSB
#