5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine
non-polymer
HETAIN
C10 H18 N3 O13 P3
CMPcPP
0
2014-01-30
2020-06-17
N
REL
481.184
2TM
N
Corina
N
4OIO
RCSB
O5'
O
0
1
N
N
N
-4.777
-3.346
84.515
0.148
-1.185
-0.194
O5'
2TM
1
C5'
C
0
1
N
N
N
-3.688
-2.495
84.454
1.261
-1.869
0.386
C5'
2TM
2
C4'
C
0
1
N
N
R
-4.006
-1.285
83.669
2.445
-1.829
-0.583
C4'
2TM
3
O4'
O
0
1
N
N
N
-2.865
-0.832
82.991
2.913
-0.477
-0.727
O4'
2TM
4
C3'
C
0
1
N
N
S
-5.119
-1.477
82.741
3.612
-2.663
-0.019
C3'
2TM
5
O3'
O
0
1
N
N
N
-6.298
-1.014
83.300
3.945
-3.726
-0.914
O3'
2TM
6
C2'
C
0
1
N
N
R
-4.742
-0.751
81.533
4.782
-1.656
0.086
C2'
2TM
7
O2'
O
0
1
N
N
N
-5.359
0.487
81.421
6.012
-2.255
-0.329
O2'
2TM
8
C1'
C
0
1
N
N
R
-3.289
-0.577
81.656
4.344
-0.544
-0.906
C1'
2TM
9
C5
C
0
1
N
N
N
-1.047
-3.242
80.327
6.431
2.491
-1.081
C5
2TM
10
C6
C
0
1
N
N
N
-1.781
-2.425
81.187
5.860
1.309
-1.414
C6
2TM
11
N1
N
0
1
N
N
N
-2.526
-1.417
80.694
4.969
0.735
-0.558
N1
2TM
12
C2
C
0
1
N
N
N
-2.559
-1.195
79.360
4.659
1.336
0.605
C2
2TM
13
N3
N
0
1
N
N
N
-1.858
-1.970
78.511
5.212
2.499
0.947
N3
2TM
14
C4
C
0
1
N
N
N
-1.105
-2.986
78.958
6.089
3.092
0.148
C4
2TM
15
O3G
O
0
1
N
N
N
-7.436
-3.176
90.369
-7.047
2.093
-1.782
O3G
2TM
16
PG
P
0
1
N
N
N
-8.071
-4.400
89.723
-6.668
1.080
-0.590
PG
2TM
17
O1G
O
0
1
N
N
N
-9.541
-4.455
90.075
-6.886
1.747
0.713
O1G
2TM
18
O2G
O
0
1
N
N
N
-7.394
-5.647
90.244
-7.599
-0.231
-0.684
O2G
2TM
19
O3B
O
0
1
N
N
N
-7.926
-4.304
88.139
-5.122
0.651
-0.721
O3B
2TM
20
PB
P
0
1
N
N
N
-7.039
-3.191
87.437
-4.070
-0.056
0.271
PB
2TM
21
O1B
O
0
1
N
N
N
-7.039
-1.877
88.296
-4.618
-1.512
0.686
O1B
2TM
22
O2B
O
0
1
N
N
N
-7.606
-2.888
86.074
-3.902
0.773
1.485
O2B
2TM
23
PA
P
0
1
N
N
N
-4.812
-4.489
85.619
-1.271
-1.031
0.551
PA
2TM
24
O1A
O
0
1
N
N
N
-5.844
-5.603
85.175
-1.775
-2.369
0.933
O1A
2TM
25
O2A
O
0
1
N
N
N
-3.447
-5.096
85.746
-1.089
-0.129
1.872
O2A
2TM
26
N4
N
0
1
N
N
N
-0.368
-3.796
78.034
6.654
4.293
0.511
N4
2TM
27
O2
O
0
1
N
N
N
-3.234
-0.275
78.877
3.859
0.808
1.359
O2
2TM
28
C1
C
0
1
N
N
N
-5.321
-3.788
87.230
-2.463
-0.230
-0.572
C1
2TM
29
H1
H
0
1
N
N
N
-2.846
-3.021
83.979
1.540
-1.382
1.321
H1
2TM
30
H2
H
0
1
N
N
N
-3.406
-2.198
85.475
0.988
-2.905
0.583
H2
2TM
31
H3
H
0
1
N
N
N
-4.308
-0.506
84.384
2.143
-2.222
-1.553
H3
2TM
32
H4
H
0
1
N
N
N
-5.207
-2.547
82.504
3.357
-3.059
0.964
H4
2TM
33
H5
H
0
1
N
N
N
-6.498
-1.517
84.080
4.674
-4.283
-0.609
H5
2TM
34
H6
H
0
1
N
N
N
-4.960
-1.371
80.651
4.866
-1.262
1.099
H6
2TM
35
H7
H
0
1
N
N
N
-6.298
0.367
81.342
6.326
-2.955
0.259
H7
2TM
36
H8
H
0
1
N
N
N
-3.062
0.474
81.422
4.589
-0.825
-1.931
H8
2TM
37
H9
H
0
1
N
N
N
-0.448
-4.054
80.713
7.140
2.964
-1.744
H9
2TM
38
H10
H
0
1
N
N
N
-1.752
-2.601
82.252
6.109
0.827
-2.348
H10
2TM
39
H11
H
0
1
N
N
N
-8.095
-2.699
90.860
-7.966
2.394
-1.766
H11
2TM
40
H12
H
0
1
N
N
N
-8.034
-6.197
90.680
-7.507
-0.720
-1.514
H12
2TM
41
H13
H
0
1
N
N
N
-7.395
-1.162
87.782
-4.752
-2.110
-0.062
H13
2TM
42
H14
H
0
1
N
N
N
-3.490
-6.021
85.533
-0.760
0.763
1.697
H14
2TM
43
H15
H
0
1
N
N
N
-0.414
-3.604
77.054
6.411
4.708
1.354
H15
2TM
44
H16
H
0
1
N
N
N
0.193
-4.553
78.369
7.295
4.725
-0.075
H16
2TM
45
H17
H
0
1
N
N
N
-5.158
-4.569
87.987
-2.586
-0.841
-1.467
H17
2TM
46
H18
H
0
1
N
N
N
-4.657
-2.935
87.434
-2.091
0.755
-0.854
H18
2TM
47
sing
N
N
1
doub
N
N
2
sing
N
N
3
doub
N
N
4
sing
N
N
5
sing
N
N
6
doub
N
N
7
sing
N
N
8
sing
N
N
9
sing
N
N
10
sing
N
N
11
sing
N
N
12
sing
N
N
13
sing
N
N
14
sing
N
N
15
sing
N
N
16
sing
N
N
17
sing
N
N
18
sing
N
N
19
doub
N
N
20
sing
N
N
21
sing
N
N
22
doub
N
N
23
sing
N
N
24
sing
N
N
25
sing
N
N
26
sing
N
N
27
doub
N
N
28
sing
N
N
29
sing
N
N
30
sing
N
N
31
sing
N
N
32
sing
N
N
33
sing
N
N
34
sing
N
N
35
sing
N
N
36
sing
N
N
37
sing
N
N
38
sing
N
N
39
sing
N
N
40
sing
N
N
41
sing
N
N
42
sing
N
N
43
sing
N
N
44
sing
N
N
45
sing
N
N
46
sing
N
N
47
sing
N
N
48
O=P(O)(O)OP(=O)(O)CP(=O)(O)OCC2OC(N1C(=O)N=C(N)C=C1)C(O)C2O
InChI=1S/C10H18N3O13P3/c11-6-1-2-13(10(16)12-6)9-8(15)7(14)5(25-9)3-24-27(17,18)4-28(19,20)26-29(21,22)23/h1-2,5,7-9,14-15H,3-4H2,(H,17,18)(H,19,20)(H2,11,12,16)(H2,21,22,23)/t5-,7-,8-,9-/m1/s1
STGUOVSTMBLHFT-ZOQUXTDFSA-N
NC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]2O
NC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(=O)C[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]2O
C1=CN(C(=O)N=C1N)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O
C1=CN(C(=O)N=C1N)C2C(C(C(O2)COP(=O)(CP(=O)(O)OP(=O)(O)O)O)O)O
5'-O-[(S)-hydroxy{[(S)-hydroxy(phosphonooxy)phosphoryl]methyl}phosphoryl]cytidine
[(2R,3S,4R,5R)-5-(4-azanyl-2-oxidanylidene-pyrimidin-1-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-[[oxidanyl(phosphonooxy)phosphoryl]methyl]phosphinic acid
RCSB
RCSB
PDBE