data_2UH # _chem_comp.id 2UH _chem_comp.name ;N-[3-(propanoylamino)propyl]guanosine 5'-(trihydrogen diphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H26 N6 O12 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-05-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 556.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2UH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4PHF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2UH O3B O1 O 0 1 N N N N N N -26.699 5.521 3.443 -7.756 -0.088 -2.938 O3B 2UH 1 2UH PB P1 P 0 1 N N N N N N -26.039 4.503 2.538 -7.755 -0.497 -1.380 PB 2UH 2 2UH O1B O2 O 0 1 N N N N N N -26.746 3.195 2.352 -8.133 0.676 -0.562 O1B 2UH 3 2UH O2B O3 O 0 1 N N N N N N -24.586 4.291 2.910 -8.815 -1.685 -1.137 O2B 2UH 4 2UH O3A O4 O 0 1 N N N N N N -25.916 5.253 1.106 -6.284 -0.996 -0.957 O3A 2UH 5 2UH PA P2 P 0 1 N N N N N N -26.850 5.102 -0.199 -5.549 -1.240 0.454 PA 2UH 6 2UH O1A O5 O 0 1 N N N N N N -28.315 5.310 0.160 -6.003 -2.662 1.057 O1A 2UH 7 2UH O2A O6 O 0 1 N N N N N N -26.513 3.897 -1.031 -5.921 -0.162 1.398 O2A 2UH 8 2UH "O5'" O7 O 0 1 N N N N N N -26.512 6.449 -0.971 -3.954 -1.235 0.236 "O5'" 2UH 9 2UH "C5'" C1 C 0 1 N N N N N N -26.664 7.724 -0.398 -3.020 -1.323 1.315 "C5'" 2UH 10 2UH "C4'" C2 C 0 1 N N R N N N -26.599 8.698 -1.564 -1.595 -1.291 0.760 "C4'" 2UH 11 2UH "O4'" O8 O 0 1 N N N N N N -25.357 8.493 -2.282 -1.325 -0.004 0.179 "O4'" 2UH 12 2UH "C3'" C3 C 0 1 N N S N N N -27.666 8.536 -2.638 -0.583 -1.503 1.902 "C3'" 2UH 13 2UH "O3'" O9 O 0 1 N N N N N N -27.916 9.823 -3.222 0.203 -2.672 1.664 "O3'" 2UH 14 2UH "C2'" C4 C 0 1 N N R N N N -27.017 7.706 -3.743 0.303 -0.234 1.865 "C2'" 2UH 15 2UH "O2'" O10 O 0 1 N N N N N N -27.596 7.861 -5.050 1.678 -0.564 2.074 "O2'" 2UH 16 2UH "C1'" C5 C 0 1 N N R N N N -25.609 8.320 -3.660 0.070 0.282 0.418 "C1'" 2UH 17 2UH N9 N1 N 0 1 Y N N N N N -24.595 7.436 -4.252 0.324 1.722 0.337 N9 2UH 18 2UH C4 C6 C 0 1 Y N N N N N -23.695 7.785 -5.179 1.539 2.320 0.139 C4 2UH 19 2UH N3 N2 N 0 1 N N N N N N -23.407 8.922 -5.835 2.787 1.865 -0.026 N3 2UH 20 2UH C8 C7 C 0 1 Y N N N N N -24.433 6.170 -3.889 -0.608 2.714 0.439 C8 2UH 21 2UH N7 N3 N 0 1 Y N N N N N -23.445 5.636 -4.628 -0.033 3.874 0.320 N7 2UH 22 2UH C5 C8 C 0 1 Y N N N N N -22.909 6.570 -5.440 1.297 3.698 0.127 C5 2UH 23 2UH C6 C9 C 0 1 N N N N N N -21.817 6.642 -6.452 2.390 4.576 -0.063 C6 2UH 24 2UH O6 O11 O 0 1 N N N N N N -21.007 5.579 -6.827 2.225 5.784 -0.080 O6 2UH 25 2UH N1 N4 N 0 1 N N N N N N -21.669 7.848 -7.050 3.621 4.043 -0.225 N1 2UH 26 2UH C2 C10 C 0 1 N N N N N N -22.444 8.956 -6.779 3.794 2.691 -0.201 C2 2UH 27 2UH N4 N5 N 0 1 N N N N N N -22.158 10.110 -7.399 5.056 2.178 -0.368 N4 2UH 28 2UH CAO C11 C 0 1 N N N N N N -22.849 11.388 -7.206 5.266 0.728 -0.347 CAO 2UH 29 2UH CAM C12 C 0 1 N N N N N N -24.092 11.471 -8.080 6.751 0.425 -0.554 CAM 2UH 30 2UH CAN C13 C 0 1 N N N N N N -25.136 12.446 -7.502 6.970 -1.089 -0.531 CAN 2UH 31 2UH NAS N6 N 0 1 N N N N N N -26.334 12.258 -8.318 8.392 -1.380 -0.730 NAS 2UH 32 2UH CAY C14 C 0 1 N N N N N N -27.490 11.647 -8.006 8.823 -2.657 -0.747 CAY 2UH 33 2UH OAB O12 O 0 1 N N N N N N -27.719 11.169 -6.898 8.033 -3.565 -0.598 OAB 2UH 34 2UH CAL C15 C 0 1 N N N N N N -28.573 11.612 -9.087 10.286 -2.955 -0.951 CAL 2UH 35 2UH CAA C16 C 0 1 N N N N N N -28.912 10.191 -9.542 10.505 -4.470 -0.929 CAA 2UH 36 2UH H1 H1 H 0 1 N N N N N N -27.512 5.164 3.782 -8.613 0.222 -3.262 H1 2UH 37 2UH H2 H2 H 0 1 N N N N N N -24.402 3.360 2.954 -8.629 -2.488 -1.643 H2 2UH 38 2UH H3 H3 H 0 1 N N N N N N -28.836 4.609 -0.214 -5.790 -3.416 0.490 H3 2UH 39 2UH H4 H4 H 0 1 N N N N N N -25.853 7.924 0.317 -3.166 -0.480 1.991 H4 2UH 40 2UH H5 H5 H 0 1 N N N N N N -27.633 7.802 0.116 -3.178 -2.255 1.857 H5 2UH 41 2UH H6 H6 H 0 1 N N N N N N -26.640 9.725 -1.173 -1.473 -2.070 0.007 H6 2UH 42 2UH H7 H7 H 0 1 N N N N N N -28.573 8.054 -2.245 -1.099 -1.580 2.859 H7 2UH 43 2UH H8 H8 H 0 1 N N N N N N -28.323 10.390 -2.578 0.857 -2.854 2.352 H8 2UH 44 2UH H9 H9 H 0 1 N N N N N N -26.980 6.648 -3.446 -0.036 0.498 2.598 H9 2UH 45 2UH H10 H10 H 0 1 N N N N N N -28.462 7.471 -5.062 1.873 -0.891 2.962 H10 2UH 46 2UH H11 H11 H 0 1 N N N N N N -25.610 9.289 -4.180 0.698 -0.260 -0.289 H11 2UH 47 2UH H12 H12 H 0 1 N N N N N N -25.000 5.655 -3.128 -1.666 2.558 0.594 H12 2UH 48 2UH H13 H13 H 0 1 N N N N N N -20.947 7.942 -7.736 4.385 4.625 -0.356 H13 2UH 49 2UH H14 H14 H 0 1 N N N N N N -21.403 10.097 -8.054 5.808 2.775 -0.500 H14 2UH 50 2UH H15 H15 H 0 1 N N N N N N -22.167 12.210 -7.471 4.944 0.329 0.615 H15 2UH 51 2UH H16 H16 H 0 1 N N N N N N -23.144 11.482 -6.150 4.685 0.265 -1.145 H16 2UH 52 2UH H17 H17 H 0 1 N N N N N N -24.542 10.470 -8.154 7.072 0.824 -1.516 H17 2UH 53 2UH H18 H18 H 0 1 N N N N N N -23.800 11.816 -9.083 7.331 0.888 0.244 H18 2UH 54 2UH H19 H19 H 0 1 N N N N N N -24.778 13.483 -7.577 6.648 -1.489 0.430 H19 2UH 55 2UH H20 H20 H 0 1 N N N N N N -25.346 12.206 -6.449 6.390 -1.552 -1.330 H20 2UH 56 2UH H21 H21 H 0 1 N N N N N N -26.287 12.639 -9.241 9.024 -0.653 -0.849 H21 2UH 57 2UH H22 H22 H 0 1 N N N N N N -28.219 12.185 -9.957 10.608 -2.556 -1.913 H22 2UH 58 2UH H23 H23 H 0 1 N N N N N N -29.485 12.079 -8.686 10.866 -2.493 -0.153 H23 2UH 59 2UH H24 H24 H 0 1 N N N N N N -29.693 10.230 -10.316 11.563 -4.686 -1.077 H24 2UH 60 2UH H25 H25 H 0 1 N N N N N N -28.011 9.713 -9.954 10.183 -4.869 0.033 H25 2UH 61 2UH H26 H26 H 0 1 N N N N N N -29.276 9.608 -8.683 9.925 -4.932 -1.727 H26 2UH 62 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2UH CAA CAL SING N N 1 2UH CAL CAY SING N N 2 2UH NAS CAY SING N N 3 2UH NAS CAN SING N N 4 2UH CAM CAN SING N N 5 2UH CAM CAO SING N N 6 2UH CAY OAB DOUB N N 7 2UH N4 CAO SING N N 8 2UH N4 C2 SING N N 9 2UH N1 C2 SING N N 10 2UH N1 C6 SING N N 11 2UH O6 C6 DOUB N N 12 2UH C2 N3 DOUB N N 13 2UH C6 C5 SING N N 14 2UH N3 C4 SING N N 15 2UH C5 C4 DOUB Y N 16 2UH C5 N7 SING Y N 17 2UH C4 N9 SING Y N 18 2UH "O2'" "C2'" SING N N 19 2UH N7 C8 DOUB Y N 20 2UH N9 C8 SING Y N 21 2UH N9 "C1'" SING N N 22 2UH "C2'" "C1'" SING N N 23 2UH "C2'" "C3'" SING N N 24 2UH "C1'" "O4'" SING N N 25 2UH "O3'" "C3'" SING N N 26 2UH "C3'" "C4'" SING N N 27 2UH "O4'" "C4'" SING N N 28 2UH "C4'" "C5'" SING N N 29 2UH O2A PA DOUB N N 30 2UH "O5'" "C5'" SING N N 31 2UH "O5'" PA SING N N 32 2UH PA O1A SING N N 33 2UH PA O3A SING N N 34 2UH O3A PB SING N N 35 2UH O1B PB DOUB N N 36 2UH PB O2B SING N N 37 2UH PB O3B SING N N 38 2UH O3B H1 SING N N 39 2UH O2B H2 SING N N 40 2UH O1A H3 SING N N 41 2UH "C5'" H4 SING N N 42 2UH "C5'" H5 SING N N 43 2UH "C4'" H6 SING N N 44 2UH "C3'" H7 SING N N 45 2UH "O3'" H8 SING N N 46 2UH "C2'" H9 SING N N 47 2UH "O2'" H10 SING N N 48 2UH "C1'" H11 SING N N 49 2UH C8 H12 SING N N 50 2UH N1 H13 SING N N 51 2UH N4 H14 SING N N 52 2UH CAO H15 SING N N 53 2UH CAO H16 SING N N 54 2UH CAM H17 SING N N 55 2UH CAM H18 SING N N 56 2UH CAN H19 SING N N 57 2UH CAN H20 SING N N 58 2UH NAS H21 SING N N 59 2UH CAL H22 SING N N 60 2UH CAL H23 SING N N 61 2UH CAA H24 SING N N 62 2UH CAA H25 SING N N 63 2UH CAA H26 SING N N 64 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2UH SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OCC3OC(n2cnc1c2N=C(NCCCNC(=O)CC)NC1=O)C(O)C3O" 2UH InChI InChI 1.03 "InChI=1S/C16H26N6O12P2/c1-2-9(23)17-4-3-5-18-16-20-13-10(14(26)21-16)19-7-22(13)15-12(25)11(24)8(33-15)6-32-36(30,31)34-35(27,28)29/h7-8,11-12,15,24-25H,2-6H2,1H3,(H,17,23)(H,30,31)(H2,27,28,29)(H2,18,20,21,26)/t8-,11-,12-,15-/m1/s1" 2UH InChIKey InChI 1.03 CGASFCBZSMWGLJ-PMXXHBEXSA-N 2UH SMILES_CANONICAL CACTVS 3.385 "CCC(=O)NCCCNC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@H]3O" 2UH SMILES CACTVS 3.385 "CCC(=O)NCCCNC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH](CO[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O" 2UH SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCC(=O)NCCCNC1=Nc2c(ncn2[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)O)O)O)C(=O)N1" 2UH SMILES "OpenEye OEToolkits" 1.9.2 "CCC(=O)NCCCNC1=Nc2c(ncn2C3C(C(C(O3)COP(=O)(O)OP(=O)(O)O)O)O)C(=O)N1" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2UH "SYSTEMATIC NAME" ACDLabs 12.01 ;N-[3-(propanoylamino)propyl]guanosine 5'-(trihydrogen diphosphate) ; 2UH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[(2R,3S,4R,5R)-3,4-bis(oxidanyl)-5-[6-oxidanylidene-2-[3-(propanoylamino)propylamino]-1H-purin-9-yl]oxolan-2-yl]methyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2UH "Create component" 2014-05-08 RCSB 2UH "Initial release" 2014-05-28 RCSB 2UH "Modify descriptor" 2014-09-05 RCSB 2UH "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id 2UH _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAA _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #