data_2VL # _chem_comp.id 2VL _chem_comp.name ;N-{3-[6-({4-[(2R)-1,4-dimethyl-3-oxopiperazin-2-yl]phenyl}amino)-4-methyl-5-oxo-4,5-dihydropyrazin-2-yl]-2-methylphenyl }-4,5,6,7-tetrahydro-1-benzothiophene-2-carboxamide ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C33 H36 N6 O3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms GDC0834 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-02-25 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 596.742 _chem_comp.one_letter_code ? _chem_comp.three_letter_code 2VL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4OTF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal 2VL C1 C1 C 0 1 N N N -38.071 27.649 -6.950 0.145 2.243 0.999 C1 2VL 1 2VL C2 C2 C 0 1 Y N N -39.047 27.739 -8.115 0.076 2.660 -0.448 C2 2VL 2 2VL C3 C3 C 0 1 Y N N -38.593 27.992 -9.433 1.229 3.068 -1.113 C3 2VL 3 2VL C4 C4 C 0 1 Y N N -39.531 28.075 -10.467 1.159 3.447 -2.453 C4 2VL 4 2VL C5 C5 C 0 1 Y N N -40.889 27.893 -10.209 -0.050 3.417 -3.117 C5 2VL 5 2VL C6 C6 C 0 1 Y N N -41.333 27.638 -8.920 -1.196 3.012 -2.457 C6 2VL 6 2VL C7 C7 C 0 1 Y N N -40.418 27.575 -7.870 -1.136 2.633 -1.122 C7 2VL 7 2VL N8 N8 N 0 1 N N N -40.793 27.279 -6.547 -2.296 2.218 -0.460 N8 2VL 8 2VL C9 C9 C 0 1 N N N -40.936 28.200 -5.572 -3.244 1.532 -1.128 C9 2VL 9 2VL O10 O10 O 0 1 N N N -40.769 29.379 -5.802 -3.126 1.337 -2.324 O10 2VL 10 2VL C11 C11 C 0 1 Y N N -41.209 27.813 -4.191 -4.418 1.020 -0.415 C11 2VL 11 2VL C12 C12 C 0 1 Y N N -41.033 26.594 -3.587 -5.438 0.315 -0.977 C12 2VL 12 2VL C13 C13 C 0 1 Y N N -41.330 26.607 -2.215 -6.428 -0.054 -0.085 C13 2VL 13 2VL C14 C14 C 0 1 Y N N -41.717 27.817 -1.739 -6.201 0.353 1.185 C14 2VL 14 2VL S15 S15 S 0 1 Y N N -41.690 28.981 -2.985 -4.729 1.209 1.303 S15 2VL 15 2VL C16 C16 C 0 1 N N N -42.095 28.125 -0.288 -7.132 0.077 2.351 C16 2VL 16 2VL C17 C17 C 0 1 N N N -42.283 26.822 0.498 -8.499 -0.337 1.801 C17 2VL 17 2VL C18 C18 C 0 1 N N N -41.132 25.855 0.160 -8.304 -1.443 0.760 C18 2VL 18 2VL C19 C19 C 0 1 N N N -41.262 25.386 -1.297 -7.663 -0.846 -0.494 C19 2VL 19 2VL C20 C20 C 0 1 N N N -37.159 28.199 -9.795 2.528 3.100 -0.397 C20 2VL 20 2VL C21 C21 C 0 1 N N N -36.294 28.877 -8.975 3.215 4.272 -0.317 C21 2VL 21 2VL N22 N22 N 0 1 N N N -34.986 29.066 -9.324 4.410 4.336 0.332 N22 2VL 22 2VL C23 C23 C 0 1 N N N -34.528 28.608 -10.512 4.912 3.219 0.901 C23 2VL 23 2VL O24 O24 O 0 1 N N N -33.363 28.755 -10.895 5.980 3.247 1.489 O24 2VL 24 2VL C25 C25 C 0 1 N N N -35.466 27.885 -11.363 4.147 1.971 0.797 C25 2VL 25 2VL N26 N26 N 0 1 N N N -36.714 27.706 -10.972 2.996 1.975 0.161 N26 2VL 26 2VL N27 N27 N 0 1 N N N -34.955 27.412 -12.551 4.628 0.802 1.372 N27 2VL 27 2VL C28 C28 C 0 1 Y N N -35.663 26.953 -13.668 3.950 -0.404 1.174 C28 2VL 28 2VL C29 C29 C 0 1 Y N N -37.042 26.770 -13.701 3.310 -0.653 -0.033 C29 2VL 29 2VL C30 C30 C 0 1 Y N N -37.640 26.297 -14.873 2.642 -1.846 -0.226 C30 2VL 30 2VL C31 C31 C 0 1 Y N N -36.863 26.013 -15.991 2.609 -2.792 0.782 C31 2VL 31 2VL C32 C32 C 0 1 Y N N -35.493 26.190 -15.959 3.245 -2.548 1.985 C32 2VL 32 2VL C33 C33 C 0 1 Y N N -34.896 26.665 -14.799 3.920 -1.359 2.183 C33 2VL 33 2VL C34 C34 C 0 1 N N R -37.478 25.503 -17.273 1.874 -4.090 0.570 C34 2VL 34 2VL C36 C36 C 0 1 N N N -38.542 26.478 -17.700 2.741 -5.033 -0.215 C36 2VL 35 2VL O37 O37 O 0 1 N N N -38.180 27.595 -18.016 3.918 -5.113 0.068 O37 2VL 36 2VL N38 N38 N 0 1 N N N -39.849 26.152 -17.711 2.270 -5.788 -1.213 N38 2VL 37 2VL C39 C39 C 0 1 N N N -40.304 24.812 -17.335 0.879 -5.741 -1.656 C39 2VL 38 2VL C40 C40 C 0 1 N N N -39.226 23.792 -17.719 0.007 -5.100 -0.575 C40 2VL 39 2VL N41 N41 N 0 1 N N N -37.981 24.143 -17.002 0.626 -3.830 -0.160 N41 2VL 40 2VL C42 C42 C 0 1 N N N -36.914 23.141 -17.152 -0.303 -3.033 0.652 C42 2VL 41 2VL C43 C43 C 0 1 N N N -40.861 27.138 -18.126 3.190 -6.703 -1.893 C43 2VL 42 2VL C44 C44 C 0 1 N N N -34.087 29.785 -8.406 5.142 5.602 0.412 C44 2VL 43 2VL H1 H1 H 0 1 N N N -37.932 28.647 -6.510 0.255 1.161 1.060 H1 2VL 44 2VL H2 H2 H 0 1 N N N -38.472 26.965 -6.188 1.000 2.723 1.475 H2 2VL 45 2VL H3 H3 H 0 1 N N N -37.104 27.270 -7.311 -0.771 2.544 1.508 H3 2VL 46 2VL H4 H4 H 0 1 N N N -39.201 28.282 -11.474 2.052 3.764 -2.971 H4 2VL 47 2VL H5 H5 H 0 1 N N N -41.601 27.951 -11.019 -0.102 3.711 -4.155 H5 2VL 48 2VL H6 H6 H 0 1 N N N -42.386 27.489 -8.730 -2.140 2.991 -2.982 H6 2VL 49 2VL H7 H7 H 0 1 N N N -40.965 26.322 -6.314 -2.418 2.424 0.480 H7 2VL 50 2VL H8 H8 H 0 1 N N N -40.699 25.712 -4.114 -5.472 0.067 -2.028 H8 2VL 51 2VL H9 H9 H 0 1 N N N -41.294 28.718 0.178 -6.724 -0.728 2.961 H9 2VL 52 2VL H10 H10 H 0 1 N N N -43.034 28.698 -0.271 -7.238 0.979 2.954 H10 2VL 53 2VL H11 H11 H 0 1 N N N -42.277 27.039 1.576 -9.122 -0.709 2.615 H11 2VL 54 2VL H12 H12 H 0 1 N N N -43.243 26.361 0.222 -8.981 0.523 1.336 H12 2VL 55 2VL H13 H13 H 0 1 N N N -41.177 24.984 0.830 -7.654 -2.217 1.168 H13 2VL 56 2VL H14 H14 H 0 1 N N N -40.170 26.371 0.294 -9.270 -1.877 0.504 H14 2VL 57 2VL H15 H15 H 0 1 N N N -42.179 24.789 -1.411 -8.374 -0.185 -0.988 H15 2VL 58 2VL H16 H16 H 0 1 N N N -40.389 24.772 -1.565 -7.373 -1.648 -1.173 H16 2VL 59 2VL H17 H17 H 0 1 N N N -36.653 29.269 -8.035 2.808 5.162 -0.775 H17 2VL 60 2VL H18 H18 H 0 1 N N N -33.958 27.394 -12.625 5.433 0.822 1.912 H18 2VL 61 2VL H19 H19 H 0 1 N N N -37.643 26.991 -12.831 3.335 0.086 -0.821 H19 2VL 62 2VL H20 H20 H 0 1 N N N -38.710 26.152 -14.910 2.145 -2.040 -1.165 H20 2VL 63 2VL H21 H21 H 0 1 N N N -34.893 25.961 -16.827 3.217 -3.289 2.770 H21 2VL 64 2VL H22 H22 H 0 1 N N N -33.827 26.813 -14.771 4.417 -1.169 3.123 H22 2VL 65 2VL H23 H23 H 0 1 N N N -36.700 25.458 -18.049 1.641 -4.536 1.537 H23 2VL 66 2VL H24 H24 H 0 1 N N N -41.239 24.578 -17.865 0.811 -5.154 -2.572 H24 2VL 67 2VL H25 H25 H 0 1 N N N -40.479 24.773 -16.250 0.527 -6.754 -1.848 H25 2VL 68 2VL H26 H26 H 0 1 N N N -39.550 22.781 -17.430 -0.988 -4.907 -0.976 H26 2VL 69 2VL H27 H27 H 0 1 N N N -39.052 23.825 -18.805 -0.065 -5.769 0.282 H27 2VL 70 2VL H29 H29 H 0 1 N N N -36.023 23.467 -16.595 0.161 -2.079 0.902 H29 2VL 71 2VL H30 H30 H 0 1 N N N -37.260 22.175 -16.756 -1.218 -2.855 0.088 H30 2VL 72 2VL H31 H31 H 0 1 N N N -36.661 23.032 -18.217 -0.540 -3.573 1.569 H31 2VL 73 2VL H32 H32 H 0 1 N N N -41.861 26.684 -18.067 4.182 -6.619 -1.448 H32 2VL 74 2VL H33 H33 H 0 1 N N N -40.816 28.012 -17.460 2.830 -7.726 -1.786 H33 2VL 75 2VL H34 H34 H 0 1 N N N -40.662 27.454 -19.161 3.244 -6.445 -2.951 H34 2VL 76 2VL H35 H35 H 0 1 N N N -34.641 30.074 -7.501 4.836 6.143 1.308 H35 2VL 77 2VL H36 H36 H 0 1 N N N -33.247 29.131 -8.128 6.212 5.401 0.458 H36 2VL 78 2VL H37 H37 H 0 1 N N N -33.701 30.687 -8.903 4.923 6.205 -0.469 H37 2VL 79 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 2VL C43 N38 SING N N 1 2VL O37 C36 DOUB N N 2 2VL C40 C39 SING N N 3 2VL C40 N41 SING N N 4 2VL N38 C36 SING N N 5 2VL N38 C39 SING N N 6 2VL C36 C34 SING N N 7 2VL C34 N41 SING N N 8 2VL C34 C31 SING N N 9 2VL C42 N41 SING N N 10 2VL C31 C32 DOUB Y N 11 2VL C31 C30 SING Y N 12 2VL C32 C33 SING Y N 13 2VL C30 C29 DOUB Y N 14 2VL C33 C28 DOUB Y N 15 2VL C29 C28 SING Y N 16 2VL C28 N27 SING N N 17 2VL N27 C25 SING N N 18 2VL C25 N26 DOUB N N 19 2VL C25 C23 SING N N 20 2VL N26 C20 SING N N 21 2VL O24 C23 DOUB N N 22 2VL C23 N22 SING N N 23 2VL C4 C5 DOUB Y N 24 2VL C4 C3 SING Y N 25 2VL C5 C6 SING Y N 26 2VL C20 C3 SING N N 27 2VL C20 C21 DOUB N N 28 2VL C3 C2 DOUB Y N 29 2VL N22 C21 SING N N 30 2VL N22 C44 SING N N 31 2VL C6 C7 DOUB Y N 32 2VL C2 C7 SING Y N 33 2VL C2 C1 SING N N 34 2VL C7 N8 SING N N 35 2VL N8 C9 SING N N 36 2VL O10 C9 DOUB N N 37 2VL C9 C11 SING N N 38 2VL C11 C12 DOUB Y N 39 2VL C11 S15 SING Y N 40 2VL C12 C13 SING Y N 41 2VL S15 C14 SING Y N 42 2VL C13 C14 DOUB Y N 43 2VL C13 C19 SING N N 44 2VL C14 C16 SING N N 45 2VL C19 C18 SING N N 46 2VL C16 C17 SING N N 47 2VL C18 C17 SING N N 48 2VL C1 H1 SING N N 49 2VL C1 H2 SING N N 50 2VL C1 H3 SING N N 51 2VL C4 H4 SING N N 52 2VL C5 H5 SING N N 53 2VL C6 H6 SING N N 54 2VL N8 H7 SING N N 55 2VL C12 H8 SING N N 56 2VL C16 H9 SING N N 57 2VL C16 H10 SING N N 58 2VL C17 H11 SING N N 59 2VL C17 H12 SING N N 60 2VL C18 H13 SING N N 61 2VL C18 H14 SING N N 62 2VL C19 H15 SING N N 63 2VL C19 H16 SING N N 64 2VL C21 H17 SING N N 65 2VL N27 H18 SING N N 66 2VL C29 H19 SING N N 67 2VL C30 H20 SING N N 68 2VL C32 H21 SING N N 69 2VL C33 H22 SING N N 70 2VL C34 H23 SING N N 71 2VL C39 H24 SING N N 72 2VL C39 H25 SING N N 73 2VL C40 H26 SING N N 74 2VL C40 H27 SING N N 75 2VL C42 H29 SING N N 76 2VL C42 H30 SING N N 77 2VL C42 H31 SING N N 78 2VL C43 H32 SING N N 79 2VL C43 H33 SING N N 80 2VL C43 H34 SING N N 81 2VL C44 H35 SING N N 82 2VL C44 H36 SING N N 83 2VL C44 H37 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor 2VL SMILES ACDLabs 12.01 "O=C1N(C)CCN(C)C1c2ccc(cc2)NC3=NC(=CN(C3=O)C)c4cccc(c4C)NC(=O)c5sc6c(c5)CCCC6" 2VL InChI InChI 1.03 "InChI=1S/C33H36N6O3S/c1-20-24(9-7-10-25(20)36-31(40)28-18-22-8-5-6-11-27(22)43-28)26-19-39(4)33(42)30(35-26)34-23-14-12-21(13-15-23)29-32(41)38(3)17-16-37(29)2/h7,9-10,12-15,18-19,29H,5-6,8,11,16-17H2,1-4H3,(H,34,35)(H,36,40)/t29-/m1/s1" 2VL InChIKey InChI 1.03 CDOOFZZILLRUQH-GDLZYMKVSA-N 2VL SMILES_CANONICAL CACTVS 3.385 "CN1CCN(C)C(=O)[C@H]1c2ccc(NC3=NC(=CN(C)C3=O)c4cccc(NC(=O)c5sc6CCCCc6c5)c4C)cc2" 2VL SMILES CACTVS 3.385 "CN1CCN(C)C(=O)[CH]1c2ccc(NC3=NC(=CN(C)C3=O)c4cccc(NC(=O)c5sc6CCCCc6c5)c4C)cc2" 2VL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "Cc1c(cccc1NC(=O)c2cc3c(s2)CCCC3)C4=CN(C(=O)C(=N4)Nc5ccc(cc5)[C@@H]6C(=O)N(CCN6C)C)C" 2VL SMILES "OpenEye OEToolkits" 1.7.6 "Cc1c(cccc1NC(=O)c2cc3c(s2)CCCC3)C4=CN(C(=O)C(=N4)Nc5ccc(cc5)C6C(=O)N(CCN6C)C)C" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier 2VL "SYSTEMATIC NAME" ACDLabs 12.01 "N-{3-[6-({4-[(2R)-1,4-dimethyl-3-oxopiperazin-2-yl]phenyl}amino)-4-methyl-5-oxo-4,5-dihydropyrazin-2-yl]-2-methylphenyl}-4,5,6,7-tetrahydro-1-benzothiophene-2-carboxamide" 2VL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[3-[6-[[4-[(2R)-1,4-dimethyl-3-oxidanylidene-piperazin-2-yl]phenyl]amino]-4-methyl-5-oxidanylidene-pyrazin-2-yl]-2-methyl-phenyl]-4,5,6,7-tetrahydro-1-benzothiophene-2-carboxamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site 2VL "Create component" 2014-02-25 RCSB 2VL "Modify synonyms" 2015-01-22 RCSB 2VL "Initial release" 2015-01-28 RCSB 2VL "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id 2VL _pdbx_chem_comp_synonyms.name GDC0834 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##